Wall clock time and date at job start Tue Mar 31 2020 14:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47026 * 2 1 4 4 C 1.35850 * 120.90392 * 265.01687 * 3 2 1 5 5 C 1.40995 * 119.82345 * 179.97438 * 4 3 2 6 6 O 1.21803 * 119.15537 * 180.02562 * 5 4 3 7 7 O 1.34224 * 121.69177 * 0.02844 * 5 4 3 8 8 C 1.35024 * 121.46345 * 359.95101 * 7 5 4 9 9 C 1.38680 * 120.74436 * 180.02562 * 8 7 5 10 10 C 1.38511 * 119.78979 * 180.02562 * 9 8 7 11 11 O 1.35750 * 119.73049 * 179.97438 * 10 9 8 12 12 C 1.42903 * 116.99776 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46740 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47753 * 305.00037 * 13 12 11 15 15 C 1.47204 * 109.47042 * 64.99804 * 13 12 11 16 16 N 9.62586 * 85.91339 * 46.59569 * 2 1 3 17 17 C 1.52996 * 109.47153 * 184.99760 * 13 12 11 18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.39369 * 120.54415 * 0.25120 * 10 9 8 27 27 C 1.36468 * 120.42918 * 359.50610 * 26 10 9 28 28 C 1.39970 * 119.78981 * 0.47189 * 27 26 10 29 29 H 1.08997 * 109.47290 * 300.00370 * 1 2 3 30 30 H 1.09002 * 109.46805 * 60.00120 * 1 2 3 31 31 H 1.08997 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47290 * 239.99629 * 2 1 3 33 33 H 1.09002 * 109.46805 * 119.99880 * 2 1 3 34 34 H 1.08007 * 120.08743 * 359.95890 * 4 3 2 35 35 H 1.08008 * 120.10619 * 0.02562 * 9 8 7 36 36 H 1.08997 * 109.47067 * 59.99617 * 12 11 10 37 37 H 1.08996 * 109.47310 * 299.99686 * 12 11 10 38 38 H 1.09004 * 109.47066 * 55.00326 * 17 13 12 39 39 H 1.08994 * 109.47405 * 295.00156 * 17 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 41 41 H 1.07994 * 119.78897 * 179.72188 * 26 10 9 42 42 H 1.08001 * 120.10750 * 180.25643 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3604 2.0449 -1.1612 5 6 2.8276 3.3749 -1.1348 6 8 3.1178 3.9229 -2.1832 7 8 2.9608 4.0527 0.0160 8 6 2.6520 3.4912 1.2045 9 6 2.7948 4.2056 2.3846 10 6 2.4726 3.6099 3.5928 11 8 2.6135 4.3101 4.7473 12 6 2.2648 3.6389 5.9597 13 6 2.4882 4.5793 7.1456 14 1 3.5150 4.9450 7.1311 15 6 1.5605 5.7183 7.0502 16 7 0.8441 6.5975 6.9756 17 6 2.2347 3.8230 8.4512 18 6 2.5728 4.7117 9.6204 19 1 2.9322 5.7157 9.4494 20 6 2.4174 4.2451 10.9085 21 7 1.9794 3.0227 11.1167 22 14 2.8293 5.3493 12.3578 23 1 3.2982 6.6669 11.8587 24 1 1.6174 5.5402 13.1947 25 1 3.8990 4.7188 13.1723 26 6 2.0105 2.2957 3.6337 27 6 1.8593 1.5801 2.4816 28 6 2.1798 2.1664 1.2516 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2638 1.5235 -2.1022 35 1 3.1562 5.2231 2.3615 36 1 2.8884 2.7526 6.0767 37 1 1.2164 3.3430 5.9227 38 1 2.8592 2.9301 8.4810 39 1 1.1851 3.5343 8.5059 40 1 1.8705 2.6943 12.0230 41 1 1.7671 1.8418 4.5829 42 1 1.4969 0.5634 2.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153281476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:35 Heat of formation + Delta-G solvation = -59.807507 kcal Electronic energy + Delta-G solvation = -25998.480155 eV Core-core repulsion = 22102.219230 eV Total energy + Delta-G solvation = -3896.260925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.16359 -40.24919 -38.46269 -37.42945 -36.63217 -35.70201 -33.93667 -32.20377 -31.74989 -31.19630 -29.55373 -27.44980 -25.42665 -24.92170 -23.60898 -23.40448 -21.98661 -21.56785 -19.83365 -18.60746 -17.85849 -17.36002 -16.97933 -16.96093 -16.62724 -15.81556 -15.45587 -15.33657 -14.80296 -14.71461 -14.65640 -14.31302 -13.88114 -13.74538 -13.45752 -13.37701 -13.23545 -12.94462 -12.55956 -12.43427 -12.23912 -12.15289 -12.05512 -11.66527 -11.54079 -11.43612 -11.29489 -11.11247 -10.85551 -10.69261 -10.50199 -10.44997 -10.09245 -9.84417 -9.42546 -9.14109 -8.59670 -8.31141 -6.24180 -4.28021 -0.03812 0.73833 1.26707 2.02752 2.57028 3.03350 3.20676 3.29632 3.34454 3.38018 3.46000 3.53073 3.83117 3.85378 4.03923 4.30347 4.36229 4.51057 4.51587 4.67129 4.72278 4.77714 4.87747 5.01727 5.09670 5.14881 5.22320 5.26707 5.30121 5.38811 5.42545 5.51750 5.56944 5.68150 5.76322 5.80371 5.93764 5.97031 6.09798 6.21602 6.94147 7.06473 7.18838 7.25486 7.28215 7.70953 8.04183 8.27578 8.76182 9.38728 10.86695 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.002251 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.045707 B =12434.448807 C =13250.939018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C 0.051 3.949 4 C -0.273 4.273 5 C 0.513 3.487 6 O -0.473 6.473 7 O -0.271 6.271 8 C 0.190 3.810 9 C -0.181 4.181 10 C 0.202 3.798 11 O -0.302 6.302 12 C 0.061 3.939 13 C 0.012 3.988 14 H 0.116 0.884 15 C 0.240 3.760 16 N -0.463 5.463 17 C 0.034 3.966 18 C -0.529 4.529 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.890 5.890 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.281 1.281 26 C -0.225 4.225 27 C -0.013 4.013 28 C -0.201 4.201 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.030 0.970 40 H 0.264 0.736 41 H 0.147 0.853 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 -11.122 -20.118 22.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C 0.050 3.950 4 C -0.292 4.292 5 C 0.363 3.637 6 O -0.361 6.361 7 O -0.182 6.182 8 C 0.144 3.856 9 C -0.201 4.201 10 C 0.154 3.846 11 O -0.214 6.214 12 C -0.014 4.014 13 C -0.009 4.009 14 H 0.134 0.866 15 C -0.077 4.077 16 N -0.139 5.139 17 C -0.004 4.004 18 C -0.567 4.567 19 H 0.078 0.922 20 C -0.139 4.139 21 N -0.528 5.528 22 Si 0.722 3.278 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.207 1.207 26 C -0.244 4.244 27 C -0.031 4.031 28 C -0.202 4.202 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.177 0.823 35 H 0.170 0.830 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.165 0.835 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.809 -9.252 -20.556 22.557 hybrid contribution 0.369 -0.056 1.012 1.078 sum -0.441 -9.309 -19.545 21.653 Atomic orbital electron populations 1.21767 0.93169 1.02777 1.03008 1.20771 0.97234 0.90941 1.04476 1.21519 0.87069 0.95414 0.91003 1.22278 1.11231 0.95403 1.00338 1.19164 0.77012 0.86460 0.81044 1.90977 1.48361 1.70948 1.25849 1.83545 1.73173 1.47333 1.14188 1.18509 0.93685 0.90250 0.83107 1.19494 1.10921 1.02656 0.86986 1.18805 0.89938 0.89612 0.86206 1.86147 1.80416 1.41689 1.13147 1.23287 1.01598 0.96308 0.80241 1.19318 0.96864 0.88758 0.95998 0.86645 1.28919 0.93545 0.93953 0.91314 1.81065 1.10964 1.11459 1.10435 1.19190 0.98840 0.95584 0.86805 1.21100 1.45317 0.99813 0.90482 0.92186 1.24944 0.94695 0.95118 0.99112 1.69932 1.45492 1.15861 1.21558 0.86489 0.78191 0.80845 0.82313 1.19592 1.20883 1.20726 1.21212 1.08106 0.94446 1.00630 1.20687 0.93173 0.99455 0.89742 1.18853 1.12621 0.94117 0.94584 0.91880 0.92058 0.91338 0.89479 0.89394 0.82303 0.83016 0.89214 0.90726 0.93873 0.95178 0.92662 0.83495 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.90 37.16 0.37 -0.28 16 2 C -0.10 -0.44 5.58 -27.88 -0.16 -0.60 16 3 C 0.05 0.39 5.33 -102.18 -0.54 -0.15 16 4 C -0.27 -2.51 9.60 -39.39 -0.38 -2.89 16 5 C 0.51 6.57 7.89 31.78 0.25 6.82 16 6 O -0.47 -7.46 17.91 -19.60 -0.35 -7.81 16 7 O -0.27 -3.54 9.82 -20.80 -0.20 -3.74 16 8 C 0.19 2.16 6.76 -38.48 -0.26 1.90 16 9 C -0.18 -2.09 9.94 -39.32 -0.39 -2.48 16 10 C 0.20 2.28 6.69 -39.06 -0.26 2.02 16 11 O -0.30 -3.89 9.86 -18.96 -0.19 -4.08 16 12 C 0.06 0.76 4.08 37.16 0.15 0.91 16 13 C 0.01 0.20 2.45 -93.41 -0.23 -0.03 16 14 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 15 C 0.24 4.65 13.71 -20.74 -0.28 4.36 16 16 N -0.46 -9.91 18.54 42.18 0.78 -9.13 16 17 C 0.03 0.70 4.42 -27.88 -0.12 0.58 16 18 C -0.53 -13.16 8.60 -34.44 -0.30 -13.46 16 19 H 0.06 1.50 7.59 -52.49 -0.40 1.10 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -24.02 13.29 55.43 0.74 -23.29 16 22 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 26 C -0.23 -2.02 8.96 -39.80 -0.36 -2.37 16 27 C -0.01 -0.10 9.37 -39.57 -0.37 -0.47 16 28 C -0.20 -1.86 5.87 -105.01 -0.62 -2.47 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.30 8.07 -51.93 -0.42 -0.12 16 33 H 0.09 0.30 6.88 -51.93 -0.36 -0.06 16 34 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 35 H 0.15 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.09 0.89 7.63 -51.93 -0.40 0.50 16 37 H 0.07 0.86 7.65 -51.93 -0.40 0.46 16 38 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 41 H 0.15 1.08 6.24 -52.49 -0.33 0.75 16 42 H 0.14 0.66 6.64 -52.49 -0.35 0.32 16 LS Contribution 368.84 15.07 5.56 5.56 Total: -1.00 -31.52 368.84 -7.44 -38.96 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -5.16 Total: -4.80 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -3.59 Total: -7.04 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: 1.52 Total: -32.41 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.74 Total: -15.63 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.52 -7.44 -38.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153281476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.845 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds