Wall clock time and date at job start Tue Mar 31 2020 14:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47026 * 2 1 4 4 C 1.35850 * 120.90392 * 265.01687 * 3 2 1 5 5 C 1.40995 * 119.82345 * 179.97438 * 4 3 2 6 6 O 1.21803 * 119.15537 * 180.02562 * 5 4 3 7 7 O 1.34224 * 121.69177 * 0.02844 * 5 4 3 8 8 C 1.35024 * 121.46345 * 359.95101 * 7 5 4 9 9 C 1.38680 * 120.74436 * 180.02562 * 8 7 5 10 10 C 1.38511 * 119.78979 * 180.02562 * 9 8 7 11 11 O 1.35750 * 119.73049 * 179.97438 * 10 9 8 12 12 C 1.42903 * 116.99776 * 180.02562 * 11 10 9 13 13 C 1.52996 * 109.46740 * 179.97438 * 12 11 10 14 14 H 1.09000 * 109.47753 * 305.00037 * 13 12 11 15 15 C 1.47204 * 109.47042 * 64.99804 * 13 12 11 16 16 N 9.62586 * 85.91339 * 46.59569 * 2 1 3 17 17 C 1.52996 * 109.47153 * 184.99760 * 13 12 11 18 18 C 1.50702 * 109.47159 * 175.00123 * 17 13 12 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 13 20 20 C 1.37884 * 119.99942 * 179.72211 * 18 17 13 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 C 1.39369 * 120.54415 * 0.25120 * 10 9 8 27 27 C 1.36468 * 120.42918 * 359.50610 * 26 10 9 28 28 C 1.39970 * 119.78981 * 0.47189 * 27 26 10 29 29 H 1.08997 * 109.47290 * 300.00370 * 1 2 3 30 30 H 1.09002 * 109.46805 * 60.00120 * 1 2 3 31 31 H 1.08997 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47290 * 239.99629 * 2 1 3 33 33 H 1.09002 * 109.46805 * 119.99880 * 2 1 3 34 34 H 1.08007 * 120.08743 * 359.95890 * 4 3 2 35 35 H 1.08008 * 120.10619 * 0.02562 * 9 8 7 36 36 H 1.08997 * 109.47067 * 59.99617 * 12 11 10 37 37 H 1.08996 * 109.47310 * 299.99686 * 12 11 10 38 38 H 1.09004 * 109.47066 * 55.00326 * 17 13 12 39 39 H 1.08994 * 109.47405 * 295.00156 * 17 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 41 41 H 1.07994 * 119.78897 * 179.72188 * 26 10 9 42 42 H 1.08001 * 120.10750 * 180.25643 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3604 2.0449 -1.1612 5 6 2.8276 3.3749 -1.1348 6 8 3.1178 3.9229 -2.1832 7 8 2.9608 4.0527 0.0160 8 6 2.6520 3.4912 1.2045 9 6 2.7948 4.2056 2.3846 10 6 2.4726 3.6099 3.5928 11 8 2.6135 4.3101 4.7473 12 6 2.2648 3.6389 5.9597 13 6 2.4882 4.5793 7.1456 14 1 3.5150 4.9450 7.1311 15 6 1.5605 5.7183 7.0502 16 7 0.8441 6.5975 6.9756 17 6 2.2347 3.8230 8.4512 18 6 2.5728 4.7117 9.6204 19 1 2.9322 5.7157 9.4494 20 6 2.4174 4.2451 10.9085 21 7 1.9794 3.0227 11.1167 22 14 2.8293 5.3493 12.3578 23 1 3.2982 6.6669 11.8587 24 1 1.6174 5.5402 13.1947 25 1 3.8990 4.7188 13.1723 26 6 2.0105 2.2957 3.6337 27 6 1.8593 1.5801 2.4816 28 6 2.1798 2.1664 1.2516 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2638 1.5235 -2.1022 35 1 3.1562 5.2231 2.3615 36 1 2.8884 2.7526 6.0767 37 1 1.2164 3.3430 5.9227 38 1 2.8592 2.9301 8.4810 39 1 1.1851 3.5343 8.5059 40 1 1.8705 2.6943 12.0230 41 1 1.7671 1.8418 4.5829 42 1 1.4969 0.5634 2.5189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153281476.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:34 Heat of formation + Delta-G solvation = -75.515520 kcal Electronic energy + Delta-G solvation = -25999.161305 eV Core-core repulsion = 22102.219230 eV Total energy + Delta-G solvation = -3896.942075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.03024 -41.15552 -39.43704 -38.35993 -37.87781 -36.56240 -35.60882 -33.81518 -32.27322 -32.03234 -30.42659 -28.91306 -26.16883 -25.93307 -24.68030 -24.25969 -23.52401 -22.19556 -20.68697 -19.34144 -18.94475 -18.54253 -18.31096 -17.92759 -17.88958 -16.88445 -16.57059 -16.29272 -16.14775 -15.46689 -15.31588 -15.13868 -14.88128 -14.80902 -14.50362 -14.30632 -14.24834 -14.06182 -13.86793 -13.73829 -13.28868 -13.07549 -13.04125 -12.91538 -12.70266 -12.51379 -12.44082 -12.33735 -12.04454 -11.87511 -11.80764 -11.56802 -11.33897 -11.22572 -10.81705 -10.54745 -9.94212 -9.12162 -8.20805 -6.27272 -0.78636 -0.06138 0.49135 1.14099 1.39585 1.44437 1.53057 1.74096 1.86694 1.96529 2.17567 2.43472 2.61450 3.10931 3.11831 3.18244 3.21956 3.37664 3.67172 3.87557 3.93285 4.13010 4.18992 4.22023 4.26180 4.41251 4.46823 4.53760 4.62558 4.71748 4.74219 4.76401 4.79131 5.02555 5.09248 5.10464 5.15748 5.31106 5.34941 5.45439 5.46039 5.59831 5.78042 6.05450 6.14027 6.24304 6.35503 6.72959 6.86463 7.41370 8.89980 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022198 B = 0.002251 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.045707 B =12434.448807 C =13250.939018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C 0.075 3.925 4 C -0.288 4.288 5 C 0.505 3.495 6 O -0.521 6.521 7 O -0.292 6.292 8 C 0.168 3.832 9 C -0.198 4.198 10 C 0.191 3.809 11 O -0.320 6.320 12 C 0.068 3.932 13 C 0.019 3.981 14 H 0.129 0.871 15 C 0.251 3.749 16 N -0.505 5.505 17 C 0.041 3.959 18 C -0.540 4.540 19 H 0.052 0.948 20 C 0.017 3.983 21 N -0.918 5.918 22 Si 0.943 3.057 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.273 1.273 26 C -0.221 4.221 27 C 0.004 3.996 28 C -0.203 4.203 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.178 0.822 35 H 0.141 0.859 36 H 0.123 0.877 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.013 0.987 40 H 0.265 0.735 41 H 0.171 0.829 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 -14.119 -19.967 24.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C 0.074 3.926 4 C -0.307 4.307 5 C 0.358 3.642 6 O -0.414 6.414 7 O -0.205 6.205 8 C 0.123 3.877 9 C -0.217 4.217 10 C 0.143 3.857 11 O -0.233 6.233 12 C -0.007 4.007 13 C -0.002 4.002 14 H 0.147 0.853 15 C -0.065 4.065 16 N -0.182 5.182 17 C 0.002 3.998 18 C -0.578 4.578 19 H 0.070 0.930 20 C -0.183 4.183 21 N -0.558 5.558 22 Si 0.769 3.231 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.239 4.239 27 C -0.014 4.014 28 C -0.204 4.204 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.196 0.804 35 H 0.159 0.841 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.189 0.811 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -1.054 -12.253 -20.392 23.814 hybrid contribution 0.434 0.876 0.999 1.398 sum -0.621 -11.376 -19.393 22.492 Atomic orbital electron populations 1.21791 0.92709 1.03780 1.02494 1.20947 0.97306 0.88419 1.06529 1.21883 0.84552 0.96702 0.89510 1.22310 1.12598 0.93750 1.02024 1.19762 0.76489 0.87551 0.80348 1.90935 1.51032 1.72158 1.27249 1.83458 1.73431 1.48572 1.15002 1.18749 0.95052 0.91577 0.82313 1.19517 1.11879 1.02634 0.87694 1.18902 0.90898 0.90663 0.85191 1.86077 1.80989 1.42559 1.13648 1.23190 1.03161 0.95622 0.78770 1.19270 0.96731 0.88039 0.96177 0.85339 1.29561 0.93043 0.93853 0.90062 1.81065 1.12429 1.12884 1.11870 1.18991 0.97727 0.95485 0.87560 1.21524 1.44225 1.00015 0.92015 0.92977 1.25590 0.95137 0.96177 1.01367 1.69995 1.46860 1.16951 1.21977 0.85727 0.77912 0.79410 0.80008 1.19763 1.21245 1.19849 1.21508 1.06958 0.93224 1.02215 1.21126 0.91170 1.00848 0.88219 1.19169 1.11793 0.93215 0.96205 0.92196 0.92914 0.89574 0.87792 0.87094 0.80433 0.84108 0.85926 0.89577 0.93086 0.96835 0.92623 0.81129 0.79874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.90 71.98 0.71 0.02 16 2 C -0.10 -0.43 5.58 29.85 0.17 -0.27 16 3 C 0.07 0.95 5.33 -18.28 -0.10 0.85 16 4 C -0.29 -5.03 9.60 22.39 0.21 -4.81 16 5 C 0.50 13.52 7.89 68.50 0.54 14.06 16 6 O -0.52 -17.57 17.91 18.94 0.34 -17.23 16 7 O -0.29 -8.11 9.82 14.67 0.14 -7.96 16 8 C 0.17 3.83 6.76 22.98 0.16 3.98 16 9 C -0.20 -4.61 9.94 22.44 0.22 -4.39 16 10 C 0.19 3.98 6.69 22.61 0.15 4.13 16 11 O -0.32 -7.73 9.86 -90.75 -0.89 -8.62 16 12 C 0.07 1.48 4.08 71.98 0.29 1.78 16 13 C 0.02 0.60 2.45 -12.60 -0.03 0.57 16 14 H 0.13 3.71 8.14 -2.39 -0.02 3.69 16 15 C 0.25 9.58 13.71 89.44 1.23 10.81 16 16 N -0.51 -21.69 18.54 20.01 0.37 -21.32 16 17 C 0.04 1.63 4.42 29.85 0.13 1.76 16 18 C -0.54 -26.48 8.60 25.60 0.22 -26.26 16 19 H 0.05 2.58 7.59 -2.91 -0.02 2.56 16 20 C 0.02 0.87 5.46 84.66 0.46 1.33 16 21 N -0.92 -49.02 13.29 21.45 0.28 -48.74 16 22 Si 0.94 41.45 29.54 68.60 2.03 43.48 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C -0.22 -3.13 8.96 22.13 0.20 -2.93 16 27 C 0.00 0.04 9.37 22.28 0.21 0.25 16 28 C -0.20 -3.28 5.87 -20.12 -0.12 -3.39 16 29 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.10 0.23 8.07 -2.39 -0.02 0.21 16 33 H 0.11 0.08 6.88 -2.39 -0.02 0.06 16 34 H 0.18 2.32 8.06 -2.91 -0.02 2.29 16 35 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 36 H 0.12 1.92 7.63 -2.39 -0.02 1.90 16 37 H 0.09 1.71 7.65 -2.39 -0.02 1.69 16 38 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.26 13.47 8.31 -92.70 -0.77 12.70 16 41 H 0.17 1.63 6.24 -2.91 -0.02 1.61 16 42 H 0.18 0.53 6.64 -2.91 -0.02 0.51 16 Total: -1.00 -71.01 368.84 7.98 -63.03 By element: Atomic # 1 Polarization: -1.19 SS G_CDS: 1.06 Total: -0.13 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 4.66 Total: -2.50 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: 0.66 Total: -70.05 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.41 Total: -33.82 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -71.01 7.98 -63.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153281476.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.490 kcal (2) G-P(sol) polarization free energy of solvation -71.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds