Wall clock time and date at job start Tue Mar 31 2020 15:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47127 * 2 1 4 4 N 1.46504 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.36933 * 119.99967 * 267.29803 * 4 3 2 6 6 H 1.07999 * 120.00442 * 321.76219 * 5 4 3 7 7 C 1.38811 * 119.99798 * 141.75792 * 5 4 3 8 8 N 1.31622 * 119.99692 * 156.55987 * 7 5 4 9 9 Si 1.86794 * 120.00243 * 336.55843 * 7 5 4 10 10 H 1.48501 * 109.46905 * 95.53673 * 9 7 5 11 11 H 1.48503 * 109.47422 * 215.53581 * 9 7 5 12 12 H 1.48497 * 109.47154 * 335.53763 * 9 7 5 13 13 C 1.46498 * 119.99838 * 87.29860 * 4 3 2 14 14 C 1.53000 * 109.46983 * 90.00007 * 13 4 3 15 15 O 1.42897 * 109.47258 * 65.00293 * 14 13 4 16 16 C 1.35895 * 116.99987 * 180.02562 * 15 14 13 17 17 C 1.38753 * 120.05649 * 359.71588 * 16 15 14 18 18 C 1.38122 * 119.94441 * 179.70618 * 17 16 15 19 19 C 1.38292 * 120.05508 * 0.59710 * 18 17 16 20 20 C 1.38242 * 120.11106 * 359.67725 * 19 18 17 21 21 S 1.76197 * 119.97307 * 179.97438 * 20 19 18 22 22 C 1.81401 * 104.45375 * 270.02506 * 21 20 19 23 23 O 1.42100 * 104.27620 * 26.09973 * 21 20 19 24 24 O 1.42104 * 104.27829 * 153.95556 * 21 20 19 25 25 C 1.38173 * 120.05578 * 0.02601 * 20 19 18 26 26 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46898 * 299.99910 * 1 2 3 28 28 H 1.08995 * 109.46869 * 60.00042 * 1 2 3 29 29 H 1.08999 * 109.47624 * 240.00261 * 2 1 3 30 30 H 1.09003 * 109.47202 * 120.00047 * 2 1 3 31 31 H 1.08999 * 109.46656 * 59.99668 * 3 2 1 32 32 H 1.08995 * 109.47212 * 299.99748 * 3 2 1 33 33 H 0.97004 * 119.99840 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46788 * 329.99727 * 13 4 3 35 35 H 1.08997 * 109.46965 * 210.00415 * 13 4 3 36 36 H 1.09001 * 109.46990 * 185.00108 * 14 13 4 37 37 H 1.08995 * 109.46782 * 304.99722 * 14 13 4 38 38 H 1.07996 * 120.02877 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.97605 * 180.30107 * 18 17 16 40 40 H 1.08000 * 119.94512 * 179.70462 * 19 18 17 41 41 H 1.08997 * 109.46882 * 59.99694 * 22 21 20 42 42 H 1.08990 * 109.47413 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47022 * 300.00170 * 22 21 20 44 44 H 1.07997 * 120.02649 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 6 4.1892 1.4987 1.1855 6 1 3.8227 2.1164 1.9920 7 6 5.3539 0.7615 1.3499 8 7 6.2459 1.1312 2.2444 9 14 5.6551 -0.7552 0.3020 10 1 6.4875 -0.3884 -0.8718 11 1 6.3623 -1.7819 1.1089 12 1 4.3551 -1.3010 -0.1641 13 6 4.2381 1.3826 -1.2664 14 6 4.4932 2.8026 -1.7756 15 8 5.3613 3.4851 -0.8687 16 6 5.6898 4.7675 -1.1760 17 6 5.1916 5.3549 -2.3301 18 6 5.5220 6.6604 -2.6371 19 6 6.3587 7.3779 -1.8018 20 6 6.8609 6.7930 -0.6543 21 16 7.9271 7.7103 0.4071 22 6 9.5940 7.3719 -0.2233 23 8 7.5715 9.0662 0.1741 24 8 7.7468 7.1147 1.6846 25 6 6.5284 5.4894 -0.3396 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6768 1.9564 -0.8900 33 1 7.0596 0.6159 2.3596 34 1 3.6492 0.8334 -2.0011 35 1 5.1903 0.8755 -1.1115 36 1 4.9592 2.7573 -2.7600 37 1 3.5469 3.3388 -1.8460 38 1 4.5425 4.7934 -2.9855 39 1 5.1306 7.1198 -3.5328 40 1 6.6197 8.3970 -2.0461 41 1 9.6655 7.7051 -1.2587 42 1 10.3266 7.9063 0.3813 43 1 9.7915 6.3012 -0.1719 44 1 6.9207 5.0330 0.5572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154399344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:08 Heat of formation + Delta-G solvation = -52.860317 kcal Electronic energy + Delta-G solvation = -26169.047812 eV Core-core repulsion = 22408.532091 eV Total energy + Delta-G solvation = -3760.515721 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -39.83551 -37.47226 -37.04519 -36.14699 -35.87609 -32.96631 -31.55386 -31.22530 -30.05677 -29.55356 -28.52154 -25.82177 -24.10188 -22.67373 -22.27564 -21.69447 -19.86402 -19.05152 -18.19638 -16.90235 -16.25038 -16.19812 -16.06876 -15.89768 -15.57963 -15.08884 -14.89895 -14.39049 -14.05048 -13.82232 -13.44674 -13.34140 -13.26891 -12.93553 -12.87482 -12.50602 -12.35748 -12.23784 -12.03518 -11.99010 -11.73075 -11.66048 -11.29098 -11.17355 -11.02240 -10.81250 -10.79576 -10.66979 -10.50137 -10.36390 -9.90652 -9.86597 -9.50199 -9.28123 -8.44823 -7.97330 -6.84883 -5.91758 -3.33274 0.05254 0.91870 1.51878 2.86113 3.29352 3.46905 3.50121 3.54676 3.67274 3.98778 4.16894 4.55613 4.65751 4.78099 4.86374 4.91356 5.04425 5.14557 5.34776 5.39353 5.50651 5.53320 5.56761 5.58715 5.66372 5.68226 5.83186 5.92924 5.96088 6.08599 6.09667 6.16812 6.31732 6.34361 6.40889 6.47129 6.48727 6.59124 6.75422 6.84581 7.02722 7.87822 8.10253 8.45709 9.00380 9.76668 10.13559 11.23810 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003568 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.529084 B = 7845.237994 C = 8670.742029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.149 3.851 4 N -0.599 5.599 5 C -0.258 4.258 6 H 0.077 0.923 7 C 0.044 3.956 8 N -0.891 5.891 9 Si 0.865 3.135 10 H -0.288 1.288 11 H -0.302 1.302 12 H -0.268 1.268 13 C 0.134 3.866 14 C 0.041 3.959 15 O -0.261 6.261 16 C 0.128 3.872 17 C -0.170 4.170 18 C -0.102 4.102 19 C -0.083 4.083 20 C -0.621 4.621 21 S 2.502 3.498 22 C -0.650 4.650 23 O -0.943 6.943 24 O -0.928 6.928 25 C -0.055 4.055 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.508 9.537 -11.923 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C 0.024 3.976 4 N -0.320 5.320 5 C -0.386 4.386 6 H 0.095 0.905 7 C -0.157 4.157 8 N -0.531 5.531 9 Si 0.695 3.305 10 H -0.217 1.217 11 H -0.230 1.230 12 H -0.193 1.193 13 C 0.008 3.992 14 C -0.037 4.037 15 O -0.172 6.172 16 C 0.080 3.920 17 C -0.189 4.189 18 C -0.121 4.121 19 C -0.102 4.102 20 C -0.708 4.708 21 S 2.681 3.319 22 C -0.800 4.800 23 O -0.940 6.940 24 O -0.925 6.925 25 C -0.074 4.074 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.463 9.876 -10.942 14.812 hybrid contribution 0.249 -1.536 -1.635 2.257 sum 1.712 8.339 -12.577 15.187 Atomic orbital electron populations 1.21729 0.97184 1.00535 1.01026 1.22163 0.93864 1.00806 1.01820 1.20978 0.84147 0.93465 0.99054 1.44115 1.00323 1.85802 1.01794 1.18639 1.06038 1.22112 0.91806 0.90518 1.25396 0.96682 0.97469 0.96116 1.69906 1.08143 1.38472 1.36616 0.87120 0.77942 0.85787 0.79650 1.21669 1.22955 1.19250 1.21352 0.97499 0.91360 0.89036 1.23807 0.91979 0.96764 0.91130 1.86581 1.62364 1.20297 1.48000 1.19361 0.93701 0.86227 0.92718 1.21594 1.02650 0.96861 0.97773 1.20973 0.97807 0.93778 0.99523 1.20667 0.97352 0.99480 0.92719 1.30322 1.19599 1.07318 1.13571 1.05126 0.77132 0.74553 0.75074 1.30222 1.23251 1.12965 1.13587 1.93562 1.81910 1.32541 1.85980 1.93644 1.84645 1.77834 1.36376 1.20319 0.96555 0.91368 0.99202 0.93745 0.93007 0.93553 0.93408 0.91679 0.92723 0.94834 0.92899 0.91961 0.91681 0.93666 0.92773 0.85105 0.85443 0.84585 0.85188 0.85178 0.84699 0.82772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.15 -2.58 6.26 -26.73 -0.17 -2.74 16 3 C 0.15 2.84 5.67 -4.04 -0.02 2.82 16 4 N -0.60 -13.59 2.04 -173.24 -0.35 -13.95 16 5 C -0.26 -7.03 9.38 -15.06 -0.14 -7.18 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 7 C 0.04 1.25 5.28 -17.43 -0.09 1.16 16 8 N -0.89 -27.01 13.97 55.49 0.78 -26.24 16 9 Si 0.86 21.60 25.16 -169.99 -4.28 17.33 16 10 H -0.29 -7.01 6.67 56.52 0.38 -6.63 16 11 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 C 0.13 2.72 4.96 -4.04 -0.02 2.70 16 14 C 0.04 0.74 5.08 37.16 0.19 0.92 16 15 O -0.26 -5.52 9.61 -19.41 -0.19 -5.70 16 16 C 0.13 2.31 6.69 -39.22 -0.26 2.04 16 17 C -0.17 -2.44 9.04 -39.43 -0.36 -2.80 16 18 C -0.10 -1.25 10.04 -39.60 -0.40 -1.65 16 19 C -0.08 -1.04 9.47 -39.56 -0.37 -1.41 16 20 C -0.62 -8.72 5.65 -39.60 -0.22 -8.94 16 21 S 2.50 30.07 5.80 -107.50 -0.62 29.44 16 22 C -0.65 -4.78 10.80 101.05 1.09 -3.69 16 23 O -0.94 -13.17 17.12 -57.54 -0.99 -14.15 16 24 O -0.93 -15.35 17.12 -57.54 -0.99 -16.33 16 25 C -0.06 -0.95 9.41 -39.43 -0.37 -1.32 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.05 1.08 8.02 -51.93 -0.42 0.66 16 32 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 35 H 0.07 1.48 3.45 -51.93 -0.18 1.31 16 36 H 0.05 0.66 7.65 -51.93 -0.40 0.27 16 37 H 0.05 0.89 7.67 -51.93 -0.40 0.49 16 38 H 0.13 1.62 6.30 -52.49 -0.33 1.29 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.14 1.36 7.57 -52.49 -0.40 0.97 16 41 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.13 0.94 8.14 -51.92 -0.42 0.52 16 44 H 0.15 2.88 7.57 -52.49 -0.40 2.48 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -36.22 373.29 -8.53 -44.76 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.74 Total: 0.98 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -0.78 Total: -21.77 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.42 Total: -40.18 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -2.16 Total: -36.19 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.28 Total: 17.33 kcal Atomic # 16 Polarization: 30.07 SS G_CDS: -0.62 Total: 29.44 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.22 -8.53 -44.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154399344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.103 kcal (2) G-P(sol) polarization free energy of solvation -36.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds