Wall clock time and date at job start Tue Mar 31 2020 15:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47127 * 2 1 4 4 N 1.46504 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.36933 * 119.99967 * 267.29803 * 4 3 2 6 6 H 1.07999 * 120.00442 * 321.76219 * 5 4 3 7 7 C 1.38811 * 119.99798 * 141.75792 * 5 4 3 8 8 N 1.31622 * 119.99692 * 156.55987 * 7 5 4 9 9 Si 1.86794 * 120.00243 * 336.55843 * 7 5 4 10 10 H 1.48501 * 109.46905 * 95.53673 * 9 7 5 11 11 H 1.48503 * 109.47422 * 215.53581 * 9 7 5 12 12 H 1.48497 * 109.47154 * 335.53763 * 9 7 5 13 13 C 1.46498 * 119.99838 * 87.29860 * 4 3 2 14 14 C 1.53000 * 109.46983 * 90.00007 * 13 4 3 15 15 O 1.42897 * 109.47258 * 65.00293 * 14 13 4 16 16 C 1.35895 * 116.99987 * 180.02562 * 15 14 13 17 17 C 1.38753 * 120.05649 * 359.71588 * 16 15 14 18 18 C 1.38122 * 119.94441 * 179.70618 * 17 16 15 19 19 C 1.38292 * 120.05508 * 0.59710 * 18 17 16 20 20 C 1.38242 * 120.11106 * 359.67725 * 19 18 17 21 21 S 1.76197 * 119.97307 * 179.97438 * 20 19 18 22 22 C 1.81401 * 104.45375 * 270.02506 * 21 20 19 23 23 O 1.42100 * 104.27620 * 26.09973 * 21 20 19 24 24 O 1.42104 * 104.27829 * 153.95556 * 21 20 19 25 25 C 1.38173 * 120.05578 * 0.02601 * 20 19 18 26 26 H 1.08994 * 109.47130 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46898 * 299.99910 * 1 2 3 28 28 H 1.08995 * 109.46869 * 60.00042 * 1 2 3 29 29 H 1.08999 * 109.47624 * 240.00261 * 2 1 3 30 30 H 1.09003 * 109.47202 * 120.00047 * 2 1 3 31 31 H 1.08999 * 109.46656 * 59.99668 * 3 2 1 32 32 H 1.08995 * 109.47212 * 299.99748 * 3 2 1 33 33 H 0.97004 * 119.99840 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.46788 * 329.99727 * 13 4 3 35 35 H 1.08997 * 109.46965 * 210.00415 * 13 4 3 36 36 H 1.09001 * 109.46990 * 185.00108 * 14 13 4 37 37 H 1.08995 * 109.46782 * 304.99722 * 14 13 4 38 38 H 1.07996 * 120.02877 * 359.97438 * 17 16 15 39 39 H 1.08000 * 119.97605 * 180.30107 * 18 17 16 40 40 H 1.08000 * 119.94512 * 179.70462 * 19 18 17 41 41 H 1.08997 * 109.46882 * 59.99694 * 22 21 20 42 42 H 1.08990 * 109.47413 * 179.97438 * 22 21 20 43 43 H 1.09001 * 109.47022 * 300.00170 * 22 21 20 44 44 H 1.07997 * 120.02649 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5051 1.4426 0.0006 5 6 4.1892 1.4987 1.1855 6 1 3.8227 2.1164 1.9920 7 6 5.3539 0.7615 1.3499 8 7 6.2459 1.1312 2.2444 9 14 5.6551 -0.7552 0.3020 10 1 6.4875 -0.3884 -0.8718 11 1 6.3623 -1.7819 1.1089 12 1 4.3551 -1.3010 -0.1641 13 6 4.2381 1.3826 -1.2664 14 6 4.4932 2.8026 -1.7756 15 8 5.3613 3.4851 -0.8687 16 6 5.6898 4.7675 -1.1760 17 6 5.1916 5.3549 -2.3301 18 6 5.5220 6.6604 -2.6371 19 6 6.3587 7.3779 -1.8018 20 6 6.8609 6.7930 -0.6543 21 16 7.9271 7.7103 0.4071 22 6 9.5940 7.3719 -0.2233 23 8 7.5715 9.0662 0.1741 24 8 7.7468 7.1147 1.6846 25 6 6.5284 5.4894 -0.3396 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6768 1.9564 -0.8900 33 1 7.0596 0.6159 2.3596 34 1 3.6492 0.8334 -2.0011 35 1 5.1903 0.8755 -1.1115 36 1 4.9592 2.7573 -2.7600 37 1 3.5469 3.3388 -1.8460 38 1 4.5425 4.7934 -2.9855 39 1 5.1306 7.1198 -3.5328 40 1 6.6197 8.3970 -2.0461 41 1 9.6655 7.7051 -1.2587 42 1 10.3266 7.9063 0.3813 43 1 9.7915 6.3012 -0.1719 44 1 6.9207 5.0330 0.5572 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154399344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:07 Heat of formation + Delta-G solvation = -79.616196 kcal Electronic energy + Delta-G solvation = -26170.208034 eV Core-core repulsion = 22408.532091 eV Total energy + Delta-G solvation = -3761.675943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.07787 -38.84360 -38.14119 -37.69800 -36.97602 -34.57213 -33.40272 -32.35493 -31.35285 -30.26615 -29.95672 -27.51072 -25.52574 -24.05129 -23.56387 -23.05097 -21.45083 -20.19211 -19.29757 -18.83188 -17.58453 -17.29796 -17.17951 -17.09810 -16.92236 -16.57522 -16.23653 -15.88468 -15.62675 -14.88611 -14.85591 -14.51852 -14.41749 -14.10561 -14.07192 -13.94233 -13.70556 -13.53979 -13.17888 -13.13592 -13.11320 -12.92598 -12.81314 -12.46315 -12.39369 -12.24685 -12.22502 -12.07439 -11.84224 -11.81066 -11.51587 -11.37679 -11.33797 -10.55825 -10.35546 -9.21726 -8.73909 -8.11058 -5.48703 -0.86396 -0.19724 0.37891 1.28331 1.40590 1.51097 1.88506 2.40315 2.46253 2.47382 3.03728 3.08048 3.24610 3.41351 3.76971 3.96922 4.09381 4.12138 4.13278 4.17106 4.23242 4.25685 4.34447 4.42024 4.46736 4.50511 4.58651 4.67018 4.78626 4.87371 4.91883 4.94405 4.95392 5.04460 5.18155 5.23910 5.26470 5.30488 5.42089 5.58617 5.69245 6.01007 6.24186 6.62411 7.05544 7.69800 8.09032 9.09536 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003568 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.529084 B = 7845.237994 C = 8670.742029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.612 5.612 5 C -0.237 4.237 6 H 0.024 0.976 7 C -0.015 4.015 8 N -0.948 5.948 9 Si 0.936 3.064 10 H -0.276 1.276 11 H -0.314 1.314 12 H -0.249 1.249 13 C 0.126 3.874 14 C 0.042 3.958 15 O -0.313 6.313 16 C 0.095 3.905 17 C -0.165 4.165 18 C -0.092 4.092 19 C -0.078 4.078 20 C -0.621 4.621 21 S 2.504 3.496 22 C -0.620 4.620 23 O -0.964 6.964 24 O -0.988 6.988 25 C -0.093 4.093 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.035 0.965 32 H 0.068 0.932 33 H 0.258 0.742 34 H 0.102 0.898 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.155 0.845 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.164 0.836 42 H 0.158 0.842 43 H 0.141 0.859 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.894 10.396 -16.684 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.334 5.334 5 C -0.368 4.368 6 H 0.042 0.958 7 C -0.211 4.211 8 N -0.592 5.592 9 Si 0.765 3.235 10 H -0.204 1.204 11 H -0.244 1.244 12 H -0.173 1.173 13 C 0.000 4.000 14 C -0.036 4.036 15 O -0.226 6.226 16 C 0.048 3.952 17 C -0.183 4.183 18 C -0.110 4.110 19 C -0.097 4.097 20 C -0.706 4.706 21 S 2.687 3.313 22 C -0.774 4.774 23 O -0.961 6.961 24 O -0.986 6.986 25 C -0.112 4.112 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.173 0.827 39 H 0.191 0.809 40 H 0.186 0.814 41 H 0.183 0.817 42 H 0.176 0.824 43 H 0.160 0.840 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.753 10.740 -15.744 19.073 hybrid contribution 0.452 -1.593 -0.201 1.668 sum 1.206 9.147 -15.945 18.422 Atomic orbital electron populations 1.21654 0.94051 1.01853 1.02097 1.22041 0.96583 0.98902 1.00500 1.21099 0.81963 0.94895 0.99813 1.44193 1.01809 1.86213 1.01207 1.18351 1.05817 1.20007 0.92575 0.95780 1.25992 0.96616 1.00400 0.98126 1.70070 1.09067 1.40052 1.39983 0.85965 0.78463 0.81072 0.77972 1.20368 1.24355 1.17282 1.21513 0.96522 0.93375 0.88573 1.23763 0.92804 0.95015 0.91970 1.86490 1.63698 1.22274 1.50096 1.19617 0.95350 0.85540 0.94711 1.21867 1.02189 0.97886 0.96377 1.21523 0.96327 0.92699 1.00481 1.21204 0.96163 1.00741 0.91577 1.30509 1.19988 1.05806 1.14330 1.04940 0.78967 0.73407 0.73957 1.29993 1.17694 1.14035 1.15702 1.93522 1.83477 1.33139 1.85974 1.93576 1.86449 1.78543 1.40002 1.20184 0.98791 0.93276 0.98993 0.92334 0.93124 0.91322 0.92731 0.94953 0.94618 0.91370 0.93327 0.87970 0.94405 0.90046 0.91318 0.82712 0.80937 0.81357 0.81740 0.82380 0.84036 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.91 71.98 0.71 -2.76 16 2 C -0.14 -4.71 6.26 30.60 0.19 -4.51 16 3 C 0.15 5.47 5.67 86.38 0.49 5.96 16 4 N -0.61 -27.97 2.04 -702.00 -1.43 -29.40 16 5 C -0.24 -13.74 9.38 84.03 0.79 -12.95 16 6 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 7 C -0.02 -0.91 5.28 84.86 0.45 -0.46 16 8 N -0.95 -61.66 13.97 21.65 0.30 -61.35 16 9 Si 0.94 46.39 25.16 68.60 1.73 48.11 16 10 H -0.28 -12.99 6.67 99.48 0.66 -12.33 16 11 H -0.31 -16.06 7.11 99.48 0.71 -15.36 16 12 H -0.25 -11.41 7.11 99.48 0.71 -10.70 16 13 C 0.13 4.89 4.96 86.38 0.43 5.32 16 14 C 0.04 1.41 5.08 71.98 0.37 1.78 16 15 O -0.31 -13.68 9.61 -92.37 -0.89 -14.57 16 16 C 0.09 3.49 6.69 22.51 0.15 3.64 16 17 C -0.16 -4.35 9.04 22.37 0.20 -4.15 16 18 C -0.09 -1.90 10.04 22.26 0.22 -1.68 16 19 C -0.08 -1.74 9.47 22.28 0.21 -1.53 16 20 C -0.62 -17.49 5.65 22.26 0.13 -17.36 16 21 S 2.50 60.72 5.80 -56.49 -0.33 60.39 16 22 C -0.62 -7.45 10.80 113.37 1.22 -6.23 16 23 O -0.96 -26.15 17.12 -127.65 -2.19 -28.34 16 24 O -0.99 -35.59 17.12 -127.65 -2.19 -37.78 16 25 C -0.09 -3.45 9.41 22.37 0.21 -3.24 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.04 1.44 8.02 -2.39 -0.02 1.42 16 32 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 33 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 34 H 0.10 3.12 8.07 -2.39 -0.02 3.10 16 35 H 0.04 1.69 3.45 -2.39 -0.01 1.68 16 36 H 0.08 2.13 7.65 -2.39 -0.02 2.11 16 37 H 0.07 2.08 7.67 -2.39 -0.02 2.06 16 38 H 0.16 3.23 6.30 -2.91 -0.02 3.22 16 39 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 40 H 0.17 2.66 7.57 -2.91 -0.02 2.64 16 41 H 0.16 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.16 1.18 8.14 -2.40 -0.02 1.16 16 43 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.12 5.04 7.57 -2.91 -0.02 5.02 16 Total: -1.00 -88.34 373.29 1.72 -86.62 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.94 Total: 14.47 kcal Atomic # 6 Polarization: -43.94 SS G_CDS: 5.77 Total: -38.17 kcal Atomic # 7 Polarization: -89.62 SS G_CDS: -1.13 Total: -90.75 kcal Atomic # 8 Polarization: -75.42 SS G_CDS: -5.26 Total: -80.68 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.73 Total: 48.11 kcal Atomic # 16 Polarization: 60.72 SS G_CDS: -0.33 Total: 60.39 kcal Total: -88.34 1.72 -86.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154399344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.005 kcal (2) G-P(sol) polarization free energy of solvation -88.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds