Wall clock time and date at job start Tue Mar 31 2020 14:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47160 * 2 1 4 4 C 1.38243 * 119.99773 * 90.00185 * 3 2 1 5 5 C 1.38234 * 120.00000 * 180.02562 * 4 3 2 6 6 C 1.38243 * 119.99934 * 359.95736 * 5 4 3 7 7 C 1.50699 * 119.99823 * 180.02562 * 6 5 4 8 8 H 1.08991 * 109.47416 * 19.99954 * 7 6 5 9 9 C 1.52999 * 109.47210 * 260.00047 * 7 6 5 10 10 O 1.42903 * 109.47256 * 305.00467 * 9 7 6 11 11 N 1.46497 * 109.46998 * 140.00116 * 7 6 5 12 12 S 1.65603 * 120.00045 * 214.99744 * 11 7 6 13 13 O 1.42101 * 104.27836 * 181.07111 * 12 11 7 14 14 O 1.42098 * 104.27930 * 308.93018 * 12 11 7 15 15 C 1.81397 * 104.44818 * 65.00180 * 12 11 7 16 16 C 1.53003 * 109.47076 * 180.02562 * 15 12 11 17 17 C 1.50704 * 109.47036 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99799 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99929 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00068 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99725 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47547 * 60.00345 * 21 19 17 23 23 H 1.48504 * 109.47042 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47270 * 299.99635 * 21 19 17 25 25 C 1.38231 * 119.99758 * 0.27676 * 6 5 4 26 26 C 1.38234 * 120.00460 * 359.53634 * 25 6 5 27 27 H 1.09005 * 109.46760 * 299.99366 * 1 2 3 28 28 H 1.09002 * 109.47528 * 59.99551 * 1 2 3 29 29 H 1.09000 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46760 * 240.00634 * 2 1 3 31 31 H 1.08995 * 109.47230 * 120.00238 * 2 1 3 32 32 H 1.07999 * 120.00046 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.00385 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47286 * 185.00027 * 9 7 6 35 35 H 1.09008 * 109.47201 * 64.99808 * 9 7 6 36 36 H 0.96700 * 114.00311 * 180.02562 * 10 9 7 37 37 H 0.96999 * 120.00007 * 34.99807 * 11 7 6 38 38 H 1.09004 * 109.47057 * 300.00024 * 15 12 11 39 39 H 1.09000 * 109.47209 * 59.99724 * 15 12 11 40 40 H 1.08995 * 109.46749 * 299.99625 * 16 15 12 41 41 H 1.08998 * 109.47172 * 60.00063 * 16 15 12 42 42 H 0.97004 * 120.00186 * 180.02562 * 20 19 17 43 43 H 1.08005 * 119.99992 * 179.72825 * 25 6 5 44 44 H 1.07996 * 120.00459 * 180.21359 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7231 3.3759 1.1973 6 6 2.9538 4.0275 0.0001 7 6 3.4561 5.4483 0.0002 8 1 3.9083 5.6737 0.9659 9 6 2.2869 6.4026 -0.2506 10 8 1.6217 6.0335 -1.4603 11 7 4.4562 5.6127 -1.0576 12 16 5.7472 6.6238 -0.8267 13 8 6.4725 6.5504 -2.0465 14 8 5.1631 7.8448 -0.3940 15 6 6.6883 5.8557 0.5206 16 6 7.9210 6.7070 0.8315 17 6 8.7025 6.0692 1.9512 18 1 8.3549 5.1486 2.3962 19 6 9.8617 6.6605 2.4067 20 7 10.2858 7.7807 1.8638 21 14 10.8307 5.8696 3.7941 22 1 11.2594 4.5080 3.3850 23 1 12.0278 6.6952 4.0951 24 1 9.9757 5.7766 5.0047 25 6 2.7187 3.3775 -1.1970 26 6 2.2621 2.0727 -1.1971 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.0832 1.5631 2.1325 33 1 2.9027 3.8851 2.1325 34 1 2.6624 7.4220 -0.3390 35 1 1.5855 6.3447 0.5818 36 1 0.8682 6.5972 -1.6827 37 1 4.3622 5.1293 -1.8933 38 1 6.0607 5.7875 1.4092 39 1 7.0028 4.8562 0.2203 40 1 8.5486 6.7755 -0.0570 41 1 7.6061 7.7063 1.1319 42 1 11.1015 8.1966 2.1841 43 1 2.8948 3.8880 -2.1323 44 1 2.0818 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156543892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:56 Heat of formation + Delta-G solvation = -117.628011 kcal Electronic energy + Delta-G solvation = -25858.166223 eV Core-core repulsion = 22094.841964 eV Total energy + Delta-G solvation = -3763.324259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.90363 -37.55555 -36.53236 -35.44012 -35.24926 -33.89720 -33.60947 -31.17909 -31.03867 -29.93296 -27.82304 -25.61153 -24.33374 -22.91800 -22.13932 -21.64471 -20.49284 -18.94971 -17.90351 -17.23108 -17.01939 -16.31612 -15.71887 -15.49735 -15.43481 -15.18758 -14.88085 -14.55814 -14.27883 -14.09055 -13.87091 -13.55125 -13.36336 -13.22137 -13.02363 -12.51975 -12.47117 -12.09518 -11.76367 -11.73125 -11.59854 -11.51644 -11.44358 -11.42210 -11.07707 -11.02257 -10.97231 -10.93664 -10.43939 -10.37559 -10.02877 -9.82476 -9.52689 -9.05089 -8.95814 -8.61449 -8.50314 -6.12576 -4.18221 0.77276 1.22768 1.36643 3.11121 3.27047 3.31924 3.33715 3.67111 4.11159 4.24935 4.37430 4.48601 4.60258 4.65327 4.70296 4.89636 4.95591 5.06468 5.09888 5.13793 5.22604 5.25784 5.30018 5.39632 5.43693 5.60938 5.63050 5.66586 5.68946 5.73901 5.85687 5.90159 5.98928 6.05019 6.34103 6.48019 6.52309 6.58006 6.92387 7.11671 7.29643 7.35936 7.53993 7.80286 8.17342 8.85016 9.46528 10.98452 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.003367 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.440908 B = 8313.138905 C = 9863.374221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.084 4.084 4 C -0.120 4.120 5 C -0.109 4.109 6 C -0.087 4.087 7 C 0.198 3.802 8 H 0.104 0.896 9 C 0.062 3.938 10 O -0.564 6.564 11 N -1.115 6.115 12 S 2.591 3.409 13 O -0.965 6.965 14 O -0.967 6.967 15 C -0.591 4.591 16 C 0.029 3.971 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.080 4.080 26 C -0.122 4.122 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.376 0.624 37 H 0.415 0.585 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.033 0.967 41 H 0.034 0.966 42 H 0.266 0.734 43 H 0.125 0.875 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.448 -11.614 -3.498 24.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.084 4.084 4 C -0.138 4.138 5 C -0.128 4.128 6 C -0.089 4.089 7 C 0.090 3.910 8 H 0.122 0.878 9 C -0.018 4.018 10 O -0.369 6.369 11 N -0.871 5.871 12 S 2.689 3.311 13 O -0.956 6.956 14 O -0.957 6.957 15 C -0.724 4.724 16 C -0.010 4.010 17 C -0.560 4.560 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.529 5.529 21 Si 0.727 3.273 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.098 4.098 26 C -0.140 4.140 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.142 0.858 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.222 0.778 37 H 0.249 0.751 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.143 0.857 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.677 -11.018 -3.850 23.743 hybrid contribution 0.186 -0.642 0.939 1.153 sum -20.491 -11.660 -2.911 23.755 Atomic orbital electron populations 1.21742 0.94822 1.01531 1.02216 1.20539 0.96087 0.92860 1.02780 1.19890 0.99108 0.96115 0.93310 1.20932 1.00587 0.94797 0.97461 1.21027 0.99471 0.94912 0.97396 1.19770 1.00568 0.94820 0.93714 1.19693 0.88407 0.91865 0.91015 0.87782 1.22740 0.93690 0.98322 0.87038 1.86461 1.48708 1.59200 1.42503 1.55882 1.39776 1.66370 1.25103 1.05635 0.73818 0.74812 0.76876 1.93556 1.72374 1.86659 1.42998 1.93533 1.75806 1.42338 1.83979 1.30470 1.12892 1.12902 1.16137 1.18953 0.88872 0.94276 0.98909 1.20969 1.07968 1.09227 1.17881 0.92083 1.25062 0.97378 0.94947 0.97066 1.69942 1.23171 1.17952 1.41808 0.86530 0.79351 0.79285 0.82109 1.20072 1.21076 1.20070 1.20878 0.97176 0.93912 0.97864 1.20993 1.00648 0.94932 0.97396 0.92588 0.92575 0.92547 0.91130 0.91115 0.86204 0.85791 0.91190 0.92890 0.77781 0.75051 0.86460 0.85980 0.94846 0.94820 0.92465 0.85700 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 37.16 0.37 -0.60 16 2 C -0.09 -0.64 6.06 -27.88 -0.17 -0.81 16 3 C -0.08 -0.82 5.13 -104.62 -0.54 -1.35 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 5 C -0.11 -1.15 9.67 -39.58 -0.38 -1.54 16 6 C -0.09 -0.99 4.83 -104.62 -0.51 -1.50 16 7 C 0.20 2.38 2.71 -69.08 -0.19 2.19 16 8 H 0.10 1.14 7.01 -51.93 -0.36 0.77 16 9 C 0.06 0.68 6.87 37.16 0.26 0.93 16 10 O -0.56 -5.77 12.02 -35.23 -0.42 -6.19 16 11 N -1.11 -15.14 5.26 -5.89 -0.03 -15.17 16 12 S 2.59 46.15 5.38 -107.50 -0.58 45.57 16 13 O -0.97 -20.30 18.08 -57.54 -1.04 -21.34 16 14 O -0.97 -19.33 17.05 -57.54 -0.98 -20.31 16 15 C -0.59 -11.23 5.90 37.16 0.22 -11.01 16 16 C 0.03 0.74 4.98 -27.88 -0.14 0.60 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 21 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 25 C -0.08 -0.89 8.14 -39.59 -0.32 -1.22 16 26 C -0.12 -1.24 9.70 -39.58 -0.38 -1.62 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.12 1.10 8.04 -52.49 -0.42 0.68 16 34 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 35 H 0.05 0.48 8.14 -51.92 -0.42 0.05 16 36 H 0.38 2.33 9.12 45.56 0.42 2.75 16 37 H 0.41 5.16 7.06 -34.47 -0.24 4.91 16 38 H 0.12 1.95 7.44 -51.92 -0.39 1.56 16 39 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.13 1.36 6.57 -52.48 -0.34 1.02 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -35.71 378.04 -10.13 -45.84 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.91 Total: 6.14 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: -2.58 Total: -30.65 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: 0.71 Total: -40.92 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -2.44 Total: -47.85 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 46.15 SS G_CDS: -0.58 Total: 45.57 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.71 -10.13 -45.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156543892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.783 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds