Wall clock time and date at job start Tue Mar 31 2020 14:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47160 * 2 1 4 4 C 1.38243 * 119.99773 * 90.00185 * 3 2 1 5 5 C 1.38234 * 120.00000 * 180.02562 * 4 3 2 6 6 C 1.38243 * 119.99934 * 359.95736 * 5 4 3 7 7 C 1.50699 * 119.99823 * 180.02562 * 6 5 4 8 8 H 1.08991 * 109.47416 * 19.99954 * 7 6 5 9 9 C 1.52999 * 109.47210 * 260.00047 * 7 6 5 10 10 O 1.42903 * 109.47256 * 305.00467 * 9 7 6 11 11 N 1.46497 * 109.46998 * 140.00116 * 7 6 5 12 12 S 1.65603 * 120.00045 * 214.99744 * 11 7 6 13 13 O 1.42101 * 104.27836 * 181.07111 * 12 11 7 14 14 O 1.42098 * 104.27930 * 308.93018 * 12 11 7 15 15 C 1.81397 * 104.44818 * 65.00180 * 12 11 7 16 16 C 1.53003 * 109.47076 * 180.02562 * 15 12 11 17 17 C 1.50704 * 109.47036 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99799 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99929 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00068 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99725 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47547 * 60.00345 * 21 19 17 23 23 H 1.48504 * 109.47042 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47270 * 299.99635 * 21 19 17 25 25 C 1.38231 * 119.99758 * 0.27676 * 6 5 4 26 26 C 1.38234 * 120.00460 * 359.53634 * 25 6 5 27 27 H 1.09005 * 109.46760 * 299.99366 * 1 2 3 28 28 H 1.09002 * 109.47528 * 59.99551 * 1 2 3 29 29 H 1.09000 * 109.46874 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46760 * 240.00634 * 2 1 3 31 31 H 1.08995 * 109.47230 * 120.00238 * 2 1 3 32 32 H 1.07999 * 120.00046 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.00385 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47286 * 185.00027 * 9 7 6 35 35 H 1.09008 * 109.47201 * 64.99808 * 9 7 6 36 36 H 0.96700 * 114.00311 * 180.02562 * 10 9 7 37 37 H 0.96999 * 120.00007 * 34.99807 * 11 7 6 38 38 H 1.09004 * 109.47057 * 300.00024 * 15 12 11 39 39 H 1.09000 * 109.47209 * 59.99724 * 15 12 11 40 40 H 1.08995 * 109.46749 * 299.99625 * 16 15 12 41 41 H 1.08998 * 109.47172 * 60.00063 * 16 15 12 42 42 H 0.97004 * 120.00186 * 180.02562 * 20 19 17 43 43 H 1.08005 * 119.99992 * 179.72825 * 25 6 5 44 44 H 1.07996 * 120.00459 * 180.21359 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0724 1.1972 5 6 2.7231 3.3759 1.1973 6 6 2.9538 4.0275 0.0001 7 6 3.4561 5.4483 0.0002 8 1 3.9083 5.6737 0.9659 9 6 2.2869 6.4026 -0.2506 10 8 1.6217 6.0335 -1.4603 11 7 4.4562 5.6127 -1.0576 12 16 5.7472 6.6238 -0.8267 13 8 6.4725 6.5504 -2.0465 14 8 5.1631 7.8448 -0.3940 15 6 6.6883 5.8557 0.5206 16 6 7.9210 6.7070 0.8315 17 6 8.7025 6.0692 1.9512 18 1 8.3549 5.1486 2.3962 19 6 9.8617 6.6605 2.4067 20 7 10.2858 7.7807 1.8638 21 14 10.8307 5.8696 3.7941 22 1 11.2594 4.5080 3.3850 23 1 12.0278 6.6952 4.0951 24 1 9.9757 5.7766 5.0047 25 6 2.7187 3.3775 -1.1970 26 6 2.2621 2.0727 -1.1971 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.0832 1.5631 2.1325 33 1 2.9027 3.8851 2.1325 34 1 2.6624 7.4220 -0.3390 35 1 1.5855 6.3447 0.5818 36 1 0.8682 6.5972 -1.6827 37 1 4.3622 5.1293 -1.8933 38 1 6.0607 5.7875 1.4092 39 1 7.0028 4.8562 0.2203 40 1 8.5486 6.7755 -0.0570 41 1 7.6061 7.7063 1.1319 42 1 11.1015 8.1966 2.1841 43 1 2.8948 3.8880 -2.1323 44 1 2.0818 1.5638 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156543892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:55 Heat of formation + Delta-G solvation = -144.279625 kcal Electronic energy + Delta-G solvation = -25859.321924 eV Core-core repulsion = 22094.841964 eV Total energy + Delta-G solvation = -3764.479959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.69111 -38.46451 -38.02309 -37.00816 -36.09685 -35.89215 -34.38932 -33.13023 -31.80615 -30.78004 -28.63139 -27.59644 -25.03117 -23.83230 -23.42777 -22.92484 -21.27675 -20.28641 -19.23676 -18.61080 -18.15273 -17.72519 -17.04348 -16.73848 -16.52408 -16.25824 -16.14829 -15.90154 -15.20926 -15.15369 -14.79683 -14.52475 -14.45927 -14.14314 -14.01203 -13.87775 -13.70673 -13.38343 -13.20023 -13.10853 -12.93366 -12.90322 -12.79405 -12.52809 -12.44235 -12.22008 -12.15473 -12.06467 -11.78311 -11.69893 -11.60021 -11.19115 -10.84014 -10.63449 -10.43727 -9.72752 -9.38593 -8.25480 -6.39492 -0.70287 0.44377 0.59704 1.41234 1.44636 1.52729 1.81831 2.38511 2.77662 2.90528 3.07985 3.24848 3.35534 3.65502 3.92582 3.95492 4.00774 4.07924 4.12982 4.23594 4.29836 4.35411 4.48644 4.55884 4.64600 4.71546 4.75601 4.76330 4.79422 4.95869 5.11645 5.12221 5.19224 5.27132 5.28545 5.29697 5.41449 5.58287 5.68743 5.76837 5.80011 6.04495 6.07186 6.18041 6.74000 6.94335 7.30686 8.86622 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012596 B = 0.003367 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.440908 B = 8313.138905 C = 9863.374221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.088 4.088 4 C -0.127 4.127 5 C -0.117 4.117 6 C -0.097 4.097 7 C 0.187 3.813 8 H 0.115 0.885 9 C 0.063 3.937 10 O -0.574 6.574 11 N -1.098 6.098 12 S 2.619 3.381 13 O -1.000 7.000 14 O -0.989 6.989 15 C -0.589 4.589 16 C 0.022 3.978 17 C -0.540 4.540 18 H 0.076 0.924 19 C -0.003 4.003 20 N -0.935 5.935 21 Si 0.973 3.027 22 H -0.265 1.265 23 H -0.285 1.285 24 H -0.261 1.261 25 C -0.092 4.092 26 C -0.131 4.131 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.393 0.607 37 H 0.422 0.578 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.004 0.996 41 H 0.010 0.990 42 H 0.267 0.733 43 H 0.122 0.878 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.839 -13.880 -2.178 26.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.136 4.136 6 C -0.098 4.098 7 C 0.080 3.920 8 H 0.133 0.867 9 C -0.016 4.016 10 O -0.382 6.382 11 N -0.858 5.858 12 S 2.716 3.284 13 O -0.991 6.991 14 O -0.978 6.978 15 C -0.721 4.721 16 C -0.017 4.017 17 C -0.578 4.578 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.574 5.574 21 Si 0.796 3.204 22 H -0.189 1.189 23 H -0.210 1.210 24 H -0.186 1.186 25 C -0.111 4.111 26 C -0.149 4.149 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.242 0.758 37 H 0.259 0.741 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.022 0.978 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.140 0.860 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.088 -13.290 -2.535 25.903 hybrid contribution 0.500 0.027 0.478 0.692 sum -21.589 -13.263 -2.057 25.421 Atomic orbital electron populations 1.21720 0.94172 1.02293 1.01864 1.20586 0.96569 0.91602 1.03457 1.20194 0.98360 0.97116 0.93097 1.21211 1.00191 0.94725 0.98340 1.21263 0.99312 0.95314 0.97676 1.19715 1.01522 0.94373 0.94235 1.20011 0.88328 0.92988 0.90706 0.86738 1.22669 0.93905 0.96902 0.88167 1.86424 1.49599 1.59858 1.42299 1.55441 1.38601 1.65761 1.26018 1.04540 0.73744 0.74542 0.75556 1.93502 1.73842 1.87228 1.44490 1.93503 1.76223 1.43994 1.84128 1.30361 1.10930 1.12543 1.18279 1.18807 0.91122 0.94404 0.97379 1.21491 1.08365 1.09727 1.18266 0.90603 1.26106 0.98727 0.95424 0.99918 1.70093 1.23860 1.19737 1.43711 0.85379 0.77685 0.78428 0.78865 1.18940 1.21018 1.18561 1.20959 0.97796 0.94508 0.97801 1.21205 1.00567 0.94754 0.98350 0.92806 0.93054 0.91260 0.90589 0.90338 0.84476 0.84314 0.92911 0.90586 0.75820 0.74122 0.83732 0.84274 0.97755 0.97174 0.92390 0.86024 0.85097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.08 -1.07 6.06 29.85 0.18 -0.89 16 3 C -0.09 -1.51 5.13 -19.86 -0.10 -1.62 16 4 C -0.13 -2.20 9.70 22.27 0.22 -1.99 16 5 C -0.12 -2.20 9.67 22.27 0.22 -1.99 16 6 C -0.10 -2.04 4.83 -19.87 -0.10 -2.13 16 7 C 0.19 4.19 2.71 44.25 0.12 4.31 16 8 H 0.11 2.28 7.01 -2.39 -0.02 2.26 16 9 C 0.06 1.29 6.87 71.98 0.49 1.79 16 10 O -0.57 -10.96 12.02 -148.98 -1.79 -12.75 16 11 N -1.10 -28.89 5.26 -172.54 -0.91 -29.80 16 12 S 2.62 93.58 5.38 -56.49 -0.30 93.28 16 13 O -1.00 -42.81 18.08 -127.65 -2.31 -45.12 16 14 O -0.99 -39.87 17.05 -127.65 -2.18 -42.05 16 15 C -0.59 -22.11 5.90 71.98 0.42 -21.68 16 16 C 0.02 1.13 4.98 29.85 0.15 1.28 16 17 C -0.54 -29.78 9.11 25.60 0.23 -29.55 16 18 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 19 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 20 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 21 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 25 C -0.09 -1.94 8.14 22.27 0.18 -1.76 16 26 C -0.13 -2.45 9.70 22.27 0.22 -2.24 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.08 0.88 8.09 -2.38 -0.02 0.86 16 31 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 33 H 0.14 2.09 8.04 -2.91 -0.02 2.07 16 34 H 0.05 1.26 7.36 -2.39 -0.02 1.24 16 35 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.39 4.30 9.12 -74.06 -0.68 3.62 16 37 H 0.42 10.18 7.06 -96.75 -0.68 9.50 16 38 H 0.14 4.56 7.44 -2.39 -0.02 4.55 16 39 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 40 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 41 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.12 2.55 6.57 -2.91 -0.02 2.53 16 44 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -77.28 378.04 -2.11 -79.39 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.35 Total: 25.57 kcal Atomic # 6 Polarization: -60.47 SS G_CDS: 3.41 Total: -57.06 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -0.62 Total: -86.38 kcal Atomic # 8 Polarization: -93.65 SS G_CDS: -6.27 Total: -99.93 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 93.58 SS G_CDS: -0.30 Total: 93.28 kcal Total: -77.28 -2.11 -79.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156543892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.885 kcal (2) G-P(sol) polarization free energy of solvation -77.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds