Wall clock time and date at job start Tue Mar 31 2020 14:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47346 * 2 1 4 4 C 1.32989 * 119.99809 * 123.86782 * 3 2 1 5 5 C 1.50703 * 120.00245 * 353.93079 * 4 3 2 6 6 C 1.47104 * 119.99838 * 173.93352 * 4 3 2 7 7 O 1.21612 * 120.00134 * 7.37157 * 6 4 3 8 8 N 1.34776 * 119.99672 * 187.37070 * 6 4 3 9 9 C 1.47314 * 122.25766 * 0.30513 * 8 6 4 10 10 S 1.84071 * 102.62104 * 155.25773 * 9 8 6 11 11 C 1.84212 * 93.91035 * 33.34875 * 10 9 8 12 12 C 1.45510 * 122.42742 * 180.23459 * 8 6 4 13 13 H 1.08998 * 108.75607 * 301.88650 * 12 8 6 14 14 C 1.50700 * 108.74911 * 60.10832 * 12 8 6 15 15 O 1.20822 * 120.00369 * 2.44739 * 14 12 8 16 16 O 1.34233 * 119.99489 * 182.44186 * 14 12 8 17 17 C 1.45201 * 116.99675 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.46822 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46838 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00367 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00168 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00206 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99516 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47182 * 269.99506 * 23 21 19 25 25 H 1.48500 * 109.47385 * 29.99772 * 23 21 19 26 26 H 1.48502 * 109.46855 * 149.99308 * 23 21 19 27 27 H 1.08999 * 109.47477 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46788 * 299.99926 * 1 2 3 29 29 H 1.08995 * 109.47358 * 59.99018 * 1 2 3 30 30 H 1.09002 * 109.46318 * 240.00009 * 2 1 3 31 31 H 1.09000 * 109.47333 * 120.00250 * 2 1 3 32 32 H 1.07999 * 120.00219 * 303.86946 * 3 2 1 33 33 H 1.08998 * 109.47082 * 216.14571 * 5 4 3 34 34 H 1.09002 * 109.46757 * 336.14478 * 5 4 3 35 35 H 1.08999 * 109.46908 * 96.14273 * 5 4 3 36 36 H 1.09009 * 110.85709 * 36.94020 * 9 8 6 37 37 H 1.08997 * 110.87093 * 273.58001 * 9 8 6 38 38 H 1.08996 * 111.04945 * 209.72839 * 11 10 9 39 39 H 1.09001 * 111.08310 * 85.77214 * 11 10 9 40 40 H 1.09000 * 109.47367 * 60.00283 * 17 16 14 41 41 H 1.08998 * 109.47237 * 300.00260 * 17 16 14 42 42 H 1.08994 * 109.46997 * 60.00329 * 18 17 16 43 43 H 1.08998 * 109.47226 * 300.00020 * 18 17 16 44 44 H 0.96999 * 119.99724 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8592 1.8337 0.9563 5 6 3.1859 0.9257 2.1139 6 6 3.4548 3.1768 0.8843 7 8 3.0906 3.9583 0.0266 8 7 4.4042 3.5413 1.7688 9 6 4.8869 2.6327 2.8231 10 16 6.5721 3.2842 3.1750 11 6 6.1019 5.0342 2.8435 12 6 5.0251 4.8571 1.7491 13 1 5.4874 5.0121 0.7743 14 6 3.9558 5.9003 1.9482 15 8 2.8104 5.5636 2.1339 16 8 4.2760 7.2035 1.9192 17 6 3.1952 8.1524 2.1189 18 6 3.7488 9.5772 2.0524 19 6 2.6270 10.5620 2.2591 20 1 1.6200 10.2072 2.4221 21 6 2.8863 11.9162 2.2412 22 7 1.9072 12.7756 2.4211 23 14 4.6281 12.5299 1.9600 24 1 5.3216 12.6664 3.2659 25 1 5.3630 11.5606 1.1082 26 1 4.5842 13.8505 1.2823 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5140 -0.8898 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7211 2.1037 -0.7766 33 1 3.2864 1.5181 3.0232 34 1 2.3852 0.1972 2.2414 35 1 4.1224 0.4050 1.9141 36 1 4.9374 1.6067 2.4581 37 1 4.2552 2.6956 3.7091 38 1 6.9520 5.6036 2.4678 39 1 5.6823 5.5029 3.7337 40 1 2.7399 7.9843 3.0949 41 1 2.4449 8.0177 1.3399 42 1 4.2038 9.7450 1.0763 43 1 4.4993 9.7122 2.8312 44 1 2.0897 13.7282 2.4081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171625856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:21 Heat of formation + Delta-G solvation = -75.808540 kcal Electronic energy + Delta-G solvation = -25861.947637 eV Core-core repulsion = 22100.436807 eV Total energy + Delta-G solvation = -3761.510830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.08028 -39.62157 -37.00832 -36.48339 -35.97599 -33.41615 -33.01981 -31.20555 -30.54991 -28.64022 -26.87235 -25.73871 -25.09332 -23.64002 -21.96944 -20.67092 -19.98037 -18.97415 -17.98720 -17.62383 -17.02110 -16.94381 -16.23049 -16.04192 -15.72748 -15.32326 -15.06749 -14.53759 -14.25972 -14.18479 -14.08863 -13.90735 -13.50054 -13.41064 -13.04874 -12.97497 -12.64105 -12.51969 -12.49689 -12.28121 -11.70263 -11.67067 -11.51022 -11.32443 -11.17166 -11.00653 -10.71555 -10.52423 -10.20262 -9.96701 -9.91146 -9.72804 -9.45622 -9.36274 -9.08117 -8.63451 -8.29303 -6.13777 -4.15125 1.02608 1.21159 1.52638 2.17742 2.37975 2.87266 3.17527 3.26817 3.34447 3.38757 3.78616 4.13751 4.37592 4.42726 4.48439 4.51362 4.63777 4.71498 4.79626 4.86860 4.90393 5.03754 5.08019 5.14258 5.19650 5.21584 5.24823 5.45930 5.51683 5.56955 5.70297 5.81463 5.92646 5.96768 6.10579 6.14985 6.42576 6.71945 6.84518 7.15261 7.20231 7.60801 7.83362 8.05176 8.38738 8.87865 9.45500 10.98841 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.002928 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.797142 B = 9562.054109 C =11037.964007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.061 4.061 4 C -0.186 4.186 5 C -0.138 4.138 6 C 0.577 3.423 7 O -0.514 6.514 8 N -0.601 5.601 9 C 0.139 3.861 10 S -0.271 6.271 11 C -0.057 4.057 12 C 0.144 3.856 13 H 0.125 0.875 14 C 0.449 3.551 15 O -0.490 6.490 16 O -0.358 6.358 17 C 0.085 3.915 18 C -0.008 4.008 19 C -0.528 4.528 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.897 5.897 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.263 1.263 26 H -0.285 1.285 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.142 0.858 37 H 0.101 0.899 38 H 0.139 0.861 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.029 0.971 43 H 0.024 0.976 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.083 -29.330 -0.540 30.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.081 4.081 4 C -0.189 4.189 5 C -0.194 4.194 6 C 0.367 3.633 7 O -0.389 6.389 8 N -0.338 5.338 9 C -0.094 4.094 10 S -0.044 6.044 11 C -0.205 4.205 12 C 0.036 3.964 13 H 0.143 0.857 14 C 0.288 3.712 15 O -0.377 6.377 16 O -0.274 6.274 17 C 0.012 3.988 18 C -0.045 4.045 19 C -0.566 4.566 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.187 1.187 26 H -0.211 1.211 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.147 0.853 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.159 0.841 37 H 0.119 0.881 38 H 0.157 0.843 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.526 -29.303 -0.603 30.260 hybrid contribution -0.402 1.214 -0.310 1.316 sum 7.124 -28.088 -0.913 28.992 Atomic orbital electron populations 1.21723 0.94352 1.02040 1.02687 1.20955 0.96898 0.93285 1.03502 1.23641 0.91243 0.96943 0.96228 1.21145 1.03508 0.94369 0.99889 1.21579 1.02238 0.98990 0.96573 1.18234 0.77588 0.87482 0.80040 1.90847 1.59524 1.53010 1.35485 1.47977 1.41549 1.11777 1.32458 1.25420 0.92104 0.98357 0.93498 1.88447 1.17139 1.06952 1.91880 1.24460 1.00263 0.95362 1.00437 1.20756 0.91157 0.81520 1.02943 0.85736 1.23426 0.89413 0.84102 0.74297 1.90655 1.21324 1.82117 1.43575 1.86452 1.43634 1.15524 1.81797 1.23417 0.86922 0.87205 1.01240 1.19624 0.98018 0.88913 0.97992 1.20833 0.94926 0.90055 1.50763 0.90685 1.24937 0.97333 0.96562 0.94170 1.69892 1.31857 1.02271 1.49441 0.86747 0.85028 0.78406 0.79014 1.20044 1.18719 1.21137 0.92137 0.92295 0.92202 0.89822 0.90149 0.85349 0.90050 0.90264 0.90538 0.84087 0.88104 0.84329 0.87126 0.91770 0.91603 0.95314 0.95797 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.90 37.16 0.37 -0.53 16 2 C -0.11 -0.65 6.14 -27.88 -0.17 -0.82 16 3 C -0.06 -0.56 9.09 -36.13 -0.33 -0.89 16 4 C -0.19 -1.86 5.96 -102.85 -0.61 -2.47 16 5 C -0.14 -0.82 7.38 36.01 0.27 -0.56 16 6 C 0.58 8.05 6.69 -12.66 -0.08 7.96 16 7 O -0.51 -9.39 15.01 -13.06 -0.20 -9.58 16 8 N -0.60 -7.25 2.74 -170.78 -0.47 -7.72 16 9 C 0.14 1.15 5.55 60.29 0.33 1.49 16 10 S -0.27 -2.48 23.43 -107.50 -2.52 -5.00 16 11 C -0.06 -0.56 6.95 37.97 0.26 -0.30 16 12 C 0.14 1.86 2.96 -68.80 -0.20 1.65 16 13 H 0.13 1.54 8.14 -51.93 -0.42 1.12 16 14 C 0.45 7.91 6.47 36.01 0.23 8.14 16 15 O -0.49 -10.11 14.49 -25.03 -0.36 -10.47 16 16 O -0.36 -6.83 10.12 -39.27 -0.40 -7.23 16 17 C 0.08 1.86 5.40 37.16 0.20 2.06 16 18 C -0.01 -0.20 4.42 -27.88 -0.12 -0.32 16 19 C -0.53 -15.18 9.66 -34.44 -0.33 -15.51 16 20 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 21 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 22 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 23 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.37 5.32 -51.93 -0.28 0.10 16 32 H 0.13 1.40 7.51 -52.49 -0.39 1.00 16 33 H 0.08 0.48 4.87 -51.93 -0.25 0.23 16 34 H 0.08 0.37 5.86 -51.93 -0.30 0.07 16 35 H 0.08 0.32 6.75 -51.93 -0.35 -0.04 16 36 H 0.14 0.83 4.42 -51.92 -0.23 0.60 16 37 H 0.10 0.76 7.08 -51.93 -0.37 0.39 16 38 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.11 1.12 7.85 -51.93 -0.41 0.71 16 40 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 41 H 0.07 1.51 8.13 -51.93 -0.42 1.09 16 42 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 43 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -35.63 365.85 -8.93 -44.56 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -6.32 Total: -2.02 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -0.29 Total: 1.91 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.31 Total: -34.50 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.96 Total: -27.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.52 Total: -5.00 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.63 -8.93 -44.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171625856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.247 kcal (2) G-P(sol) polarization free energy of solvation -35.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds