Wall clock time and date at job start Tue Mar 31 2020 14:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 109.47346 * 2 1 4 4 C 1.32989 * 119.99809 * 123.86782 * 3 2 1 5 5 C 1.50703 * 120.00245 * 353.93079 * 4 3 2 6 6 C 1.47104 * 119.99838 * 173.93352 * 4 3 2 7 7 O 1.21612 * 120.00134 * 7.37157 * 6 4 3 8 8 N 1.34776 * 119.99672 * 187.37070 * 6 4 3 9 9 C 1.47314 * 122.25766 * 0.30513 * 8 6 4 10 10 S 1.84071 * 102.62104 * 155.25773 * 9 8 6 11 11 C 1.84212 * 93.91035 * 33.34875 * 10 9 8 12 12 C 1.45510 * 122.42742 * 180.23459 * 8 6 4 13 13 H 1.08998 * 108.75607 * 301.88650 * 12 8 6 14 14 C 1.50700 * 108.74911 * 60.10832 * 12 8 6 15 15 O 1.20822 * 120.00369 * 2.44739 * 14 12 8 16 16 O 1.34233 * 119.99489 * 182.44186 * 14 12 8 17 17 C 1.45201 * 116.99675 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.46822 * 180.02562 * 17 16 14 19 19 C 1.50699 * 109.46838 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00367 * 0.02562 * 19 18 17 21 21 C 1.37883 * 120.00168 * 179.97438 * 19 18 17 22 22 N 1.31506 * 120.00206 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99516 * 0.02562 * 21 19 18 24 24 H 1.48492 * 109.47182 * 269.99506 * 23 21 19 25 25 H 1.48500 * 109.47385 * 29.99772 * 23 21 19 26 26 H 1.48502 * 109.46855 * 149.99308 * 23 21 19 27 27 H 1.08999 * 109.47477 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46788 * 299.99926 * 1 2 3 29 29 H 1.08995 * 109.47358 * 59.99018 * 1 2 3 30 30 H 1.09002 * 109.46318 * 240.00009 * 2 1 3 31 31 H 1.09000 * 109.47333 * 120.00250 * 2 1 3 32 32 H 1.07999 * 120.00219 * 303.86946 * 3 2 1 33 33 H 1.08998 * 109.47082 * 216.14571 * 5 4 3 34 34 H 1.09002 * 109.46757 * 336.14478 * 5 4 3 35 35 H 1.08999 * 109.46908 * 96.14273 * 5 4 3 36 36 H 1.09009 * 110.85709 * 36.94020 * 9 8 6 37 37 H 1.08997 * 110.87093 * 273.58001 * 9 8 6 38 38 H 1.08996 * 111.04945 * 209.72839 * 11 10 9 39 39 H 1.09001 * 111.08310 * 85.77214 * 11 10 9 40 40 H 1.09000 * 109.47367 * 60.00283 * 17 16 14 41 41 H 1.08998 * 109.47237 * 300.00260 * 17 16 14 42 42 H 1.08994 * 109.46997 * 60.00329 * 18 17 16 43 43 H 1.08998 * 109.47226 * 300.00020 * 18 17 16 44 44 H 0.96999 * 119.99724 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8592 1.8337 0.9563 5 6 3.1859 0.9257 2.1139 6 6 3.4548 3.1768 0.8843 7 8 3.0906 3.9583 0.0266 8 7 4.4042 3.5413 1.7688 9 6 4.8869 2.6327 2.8231 10 16 6.5721 3.2842 3.1750 11 6 6.1019 5.0342 2.8435 12 6 5.0251 4.8571 1.7491 13 1 5.4874 5.0121 0.7743 14 6 3.9558 5.9003 1.9482 15 8 2.8104 5.5636 2.1339 16 8 4.2760 7.2035 1.9192 17 6 3.1952 8.1524 2.1189 18 6 3.7488 9.5772 2.0524 19 6 2.6270 10.5620 2.2591 20 1 1.6200 10.2072 2.4221 21 6 2.8863 11.9162 2.2412 22 7 1.9072 12.7756 2.4211 23 14 4.6281 12.5299 1.9600 24 1 5.3216 12.6664 3.2659 25 1 5.3630 11.5606 1.1082 26 1 4.5842 13.8505 1.2823 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5140 -0.8898 30 1 1.8932 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.7211 2.1037 -0.7766 33 1 3.2864 1.5181 3.0232 34 1 2.3852 0.1972 2.2414 35 1 4.1224 0.4050 1.9141 36 1 4.9374 1.6067 2.4581 37 1 4.2552 2.6956 3.7091 38 1 6.9520 5.6036 2.4678 39 1 5.6823 5.5029 3.7337 40 1 2.7399 7.9843 3.0949 41 1 2.4449 8.0177 1.3399 42 1 4.2038 9.7450 1.0763 43 1 4.4993 9.7122 2.8312 44 1 2.0897 13.7282 2.4081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171625856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:20 Heat of formation + Delta-G solvation = -97.597560 kcal Electronic energy + Delta-G solvation = -25862.892480 eV Core-core repulsion = 22100.436807 eV Total energy + Delta-G solvation = -3762.455673 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26697 -40.91009 -38.16023 -37.44455 -37.22825 -35.46111 -33.88962 -32.81472 -31.68825 -29.39017 -27.79511 -27.19082 -26.17837 -24.60857 -23.10407 -22.53563 -21.09082 -19.76853 -19.43694 -18.80588 -18.57746 -17.98951 -17.66469 -17.39278 -16.68647 -16.39485 -16.20758 -15.81696 -15.54385 -15.10515 -15.00137 -14.86575 -14.75769 -14.62505 -14.21063 -14.06275 -13.70449 -13.44830 -13.28487 -13.19778 -13.11673 -13.04692 -12.61927 -12.52219 -12.31800 -12.27683 -12.01559 -11.84763 -11.61113 -11.56892 -11.53695 -11.41611 -10.94135 -10.84369 -10.37316 -9.88855 -8.98523 -8.37593 -6.46684 0.20539 0.48101 0.72272 1.01057 1.16915 1.36099 1.38823 1.51410 1.71830 2.11244 2.32181 2.89409 2.97117 3.33054 3.39666 3.72576 3.85132 3.89169 4.06934 4.09212 4.10341 4.12176 4.26886 4.28632 4.32852 4.40645 4.52791 4.55190 4.68574 4.74777 4.82866 4.96774 4.98270 5.03997 5.12174 5.22973 5.30487 5.39355 5.42667 5.47307 5.53764 5.94146 6.11378 6.51265 6.59105 6.85354 7.18409 8.78746 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.002928 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.797142 B = 9562.054109 C =11037.964007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.060 4.060 4 C -0.198 4.198 5 C -0.135 4.135 6 C 0.564 3.436 7 O -0.573 6.573 8 N -0.601 5.601 9 C 0.134 3.866 10 S -0.257 6.257 11 C -0.055 4.055 12 C 0.148 3.852 13 H 0.131 0.869 14 C 0.445 3.555 15 O -0.525 6.525 16 O -0.352 6.352 17 C 0.097 3.903 18 C 0.000 4.000 19 C -0.546 4.546 20 H 0.031 0.969 21 C 0.011 3.989 22 N -0.945 5.945 23 Si 0.957 3.043 24 H -0.258 1.258 25 H -0.244 1.244 26 H -0.281 1.281 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.172 0.828 37 H 0.114 0.886 38 H 0.161 0.839 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.034 0.966 43 H 0.042 0.958 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 -31.933 0.209 33.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 C -0.080 4.080 4 C -0.201 4.201 5 C -0.191 4.191 6 C 0.357 3.643 7 O -0.453 6.453 8 N -0.336 5.336 9 C -0.096 4.096 10 S -0.030 6.030 11 C -0.203 4.203 12 C 0.040 3.960 13 H 0.148 0.852 14 C 0.286 3.714 15 O -0.413 6.413 16 O -0.268 6.268 17 C 0.023 3.977 18 C -0.037 4.037 19 C -0.584 4.584 20 H 0.049 0.951 21 C -0.187 4.187 22 N -0.584 5.584 23 Si 0.778 3.222 24 H -0.183 1.183 25 H -0.167 1.167 26 H -0.206 1.206 27 H 0.098 0.902 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.189 0.811 37 H 0.131 0.869 38 H 0.179 0.821 39 H 0.127 0.873 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.577 -31.957 0.183 33.662 hybrid contribution -1.473 1.951 -0.561 2.508 sum 9.104 -30.005 -0.377 31.358 Atomic orbital electron populations 1.21743 0.94520 1.02967 1.01729 1.21010 0.96574 0.90975 1.05272 1.23812 0.90702 0.98369 0.95114 1.21326 1.03913 0.93132 1.01767 1.21658 1.04248 0.98592 0.94565 1.19064 0.77392 0.88567 0.79325 1.90808 1.61517 1.54971 1.37961 1.48126 1.40983 1.11771 1.32753 1.25836 0.91800 0.99005 0.92999 1.88451 1.17216 1.05607 1.91736 1.24491 0.99837 0.96740 0.99279 1.20949 0.90036 0.80497 1.04505 0.85190 1.24522 0.90290 0.83894 0.72712 1.90640 1.23188 1.82336 1.45165 1.86439 1.42046 1.16254 1.82066 1.22944 0.87140 0.87328 1.00249 1.19450 0.96718 0.88952 0.98627 1.21097 0.94536 0.91645 1.51102 0.95068 1.25992 1.02672 0.96536 0.93465 1.70043 1.34790 1.02923 1.50627 0.85570 0.78628 0.78067 0.79912 1.18296 1.16705 1.20615 0.90200 0.93291 0.93242 0.88332 0.87894 0.88295 0.89832 0.88394 0.87852 0.81136 0.86867 0.82132 0.87250 0.92276 0.93658 0.94751 0.93991 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.90 71.98 0.71 -0.91 16 2 C -0.10 -0.99 6.14 29.85 0.18 -0.81 16 3 C -0.06 -1.09 9.09 24.52 0.22 -0.87 16 4 C -0.20 -3.77 5.96 -18.70 -0.11 -3.88 16 5 C -0.13 -1.16 7.38 71.24 0.53 -0.64 16 6 C 0.56 15.91 6.69 86.57 0.58 16.49 16 7 O -0.57 -22.14 15.01 13.46 0.20 -21.94 16 8 N -0.60 -13.92 2.74 -812.49 -2.23 -16.15 16 9 C 0.13 1.87 5.55 127.61 0.71 2.58 16 10 S -0.26 -3.94 23.43 -56.49 -1.32 -5.26 16 11 C -0.06 -0.97 6.95 72.51 0.50 -0.47 16 12 C 0.15 3.71 2.96 44.96 0.13 3.84 16 13 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 14 C 0.45 15.89 6.47 71.24 0.46 16.35 16 15 O -0.53 -22.47 14.49 27.98 0.41 -22.07 16 16 O -0.35 -13.46 10.12 -51.45 -0.52 -13.98 16 17 C 0.10 4.38 5.40 71.98 0.39 4.77 16 18 C 0.00 0.00 4.42 29.85 0.13 0.13 16 19 C -0.55 -32.37 9.66 25.60 0.25 -32.12 16 20 H 0.03 2.05 7.99 -2.91 -0.02 2.02 16 21 C 0.01 0.67 5.47 84.66 0.46 1.13 16 22 N -0.94 -59.52 13.96 21.45 0.30 -59.23 16 23 Si 0.96 43.66 27.47 68.60 1.88 45.54 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.24 -10.32 6.54 99.48 0.65 -9.67 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.57 5.32 -2.39 -0.01 0.55 16 32 H 0.10 2.36 7.51 -2.91 -0.02 2.34 16 33 H 0.08 0.71 4.87 -2.39 -0.01 0.70 16 34 H 0.10 0.52 5.86 -2.39 -0.01 0.51 16 35 H 0.10 0.36 6.75 -2.39 -0.02 0.34 16 36 H 0.17 1.34 4.42 -2.38 -0.01 1.33 16 37 H 0.11 1.37 7.08 -2.39 -0.02 1.35 16 38 H 0.16 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.11 2.00 7.85 -2.39 -0.02 1.98 16 40 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 41 H 0.04 2.20 8.13 -2.39 -0.02 2.18 16 42 H 0.03 1.63 7.20 -2.39 -0.02 1.61 16 43 H 0.04 1.90 7.57 -2.39 -0.02 1.88 16 44 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -82.06 365.85 4.83 -77.24 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.96 Total: 10.26 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.15 Total: 5.59 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -1.93 Total: -75.37 kcal Atomic # 8 Polarization: -58.08 SS G_CDS: 0.09 Total: -57.99 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -1.32 Total: -5.26 kcal Total: -82.06 4.83 -77.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171625856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.362 kcal (2) G-P(sol) polarization free energy of solvation -82.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds