Wall clock time and date at job start Tue Mar 31 2020 14:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46900 * 2 1 4 4 C 1.32997 * 120.00092 * 123.84583 * 3 2 1 5 5 C 1.50702 * 119.99381 * 354.80952 * 4 3 2 6 6 C 1.47102 * 120.00088 * 174.81241 * 4 3 2 7 7 O 1.21616 * 119.99625 * 108.27062 * 6 4 3 8 8 N 1.34767 * 120.00097 * 288.26705 * 6 4 3 9 9 C 1.47604 * 122.43113 * 355.04895 * 8 6 4 10 10 S 1.84076 * 102.64164 * 204.78783 * 9 8 6 11 11 C 1.84211 * 93.90889 * 326.56727 * 10 9 8 12 12 C 1.45501 * 122.43052 * 175.03192 * 8 6 4 13 13 H 1.08993 * 108.75705 * 57.97198 * 12 8 6 14 14 C 1.50697 * 108.62545 * 299.81953 * 12 8 6 15 15 O 1.20828 * 120.00188 * 357.48472 * 14 12 8 16 16 O 1.34231 * 120.00130 * 177.47990 * 14 12 8 17 17 C 1.45205 * 117.00003 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46942 * 180.02562 * 17 16 14 19 19 C 1.50694 * 109.46867 * 180.02562 * 18 17 16 20 20 H 1.08007 * 120.00434 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00039 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00114 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47181 * 60.00140 * 23 21 19 25 25 H 1.48503 * 109.47076 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47128 * 300.00277 * 23 21 19 27 27 H 1.09004 * 109.47351 * 59.99954 * 1 2 3 28 28 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47351 * 299.99865 * 1 2 3 30 30 H 1.09004 * 109.46960 * 240.00233 * 2 1 3 31 31 H 1.08996 * 109.47212 * 120.00409 * 2 1 3 32 32 H 1.08003 * 120.00223 * 303.84185 * 3 2 1 33 33 H 1.09009 * 109.46645 * 184.90192 * 5 4 3 34 34 H 1.08997 * 109.47364 * 304.89931 * 5 4 3 35 35 H 1.09007 * 109.46953 * 64.90766 * 5 4 3 36 36 H 1.09003 * 110.77680 * 86.49935 * 9 8 6 37 37 H 1.09000 * 110.78021 * 323.08107 * 9 8 6 38 38 H 1.08999 * 111.04978 * 274.24191 * 11 10 9 39 39 H 1.09001 * 111.05138 * 150.27184 * 11 10 9 40 40 H 1.08997 * 109.46806 * 299.99970 * 17 16 14 41 41 H 1.08994 * 109.47153 * 60.00230 * 17 16 14 42 42 H 1.08995 * 109.46814 * 300.00174 * 18 17 16 43 43 H 1.08994 * 109.46919 * 59.99658 * 18 17 16 44 44 H 0.96996 * 120.00005 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.8587 1.8340 0.9566 5 6 3.2005 0.9187 2.1040 6 6 3.4390 3.1842 0.8946 7 8 3.0630 4.0438 1.6685 8 7 4.3874 3.4688 -0.0196 9 6 4.9595 2.4421 -0.9126 10 16 6.6086 3.1452 -1.3304 11 6 6.0163 4.8890 -1.2864 12 6 4.9214 4.8104 -0.1984 13 1 5.3429 5.1488 0.7480 14 6 3.7914 5.7311 -0.5809 15 8 2.6770 5.2894 -0.7326 16 8 4.0228 7.0421 -0.7531 17 6 2.8873 7.8693 -1.1205 18 6 3.3425 9.3221 -1.2719 19 6 2.1640 10.1806 -1.6526 20 1 1.1879 9.7346 -1.7748 21 6 2.3316 11.5356 -1.8449 22 7 3.5202 12.0787 -1.6965 23 14 0.8709 12.5997 -2.3175 24 1 -0.1674 12.5133 -1.2593 25 1 1.3124 14.0101 -2.4630 26 1 0.3063 12.1217 -3.6051 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7211 2.1036 -0.7768 33 1 3.8153 1.4558 2.8264 34 1 2.2828 0.5827 2.5866 35 1 3.7509 0.0558 1.7290 36 1 4.3502 2.3262 -1.8089 37 1 5.0656 1.4912 -0.3904 38 1 5.5935 5.1832 -2.2470 39 1 6.8164 5.5668 -0.9886 40 1 2.4729 7.5183 -2.0656 41 1 2.1253 7.8059 -0.3438 42 1 3.7572 9.6732 -0.3270 43 1 4.1044 9.3851 -2.0487 44 1 3.6381 13.0320 -1.8315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171625861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:24 Heat of formation + Delta-G solvation = -104.511799 kcal Electronic energy + Delta-G solvation = -25835.484472 eV Core-core repulsion = 22072.728975 eV Total energy + Delta-G solvation = -3762.755497 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.95633 -39.48909 -36.89850 -36.36096 -35.88579 -33.39971 -32.49180 -31.41053 -30.16601 -27.80051 -27.42664 -25.57848 -25.02984 -23.65385 -21.90534 -20.87715 -20.09852 -18.81916 -17.88261 -17.63239 -17.12274 -16.57396 -16.03878 -15.86128 -15.68183 -15.16138 -14.99728 -14.54421 -14.34332 -14.13756 -14.00682 -13.64024 -13.47593 -13.25429 -12.80223 -12.76758 -12.57571 -12.51687 -12.36742 -12.22755 -12.08847 -11.74495 -11.29192 -11.23119 -11.21492 -11.06488 -10.76363 -10.70182 -10.29943 -10.08431 -9.70314 -9.67905 -9.36140 -9.26034 -9.14358 -8.45715 -8.27644 -6.11974 -4.16506 1.18493 1.34724 1.53651 2.26990 2.37147 2.46896 3.14775 3.29320 3.33295 3.37100 3.82038 4.19257 4.36859 4.54685 4.57348 4.62258 4.72134 4.82603 4.82791 4.95406 4.99949 5.13991 5.24215 5.24602 5.25101 5.25741 5.31860 5.54179 5.58849 5.62256 5.77186 5.85824 6.02623 6.07564 6.13399 6.24817 6.59727 6.80471 6.88684 7.52042 7.59467 7.80004 7.85320 8.09660 8.22065 8.88541 9.47928 10.99504 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.002877 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.488477 B = 9730.763270 C =11035.444652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.104 4.104 4 C -0.166 4.166 5 C -0.102 4.102 6 C 0.581 3.419 7 O -0.508 6.508 8 N -0.601 5.601 9 C 0.157 3.843 10 S -0.256 6.256 11 C -0.057 4.057 12 C 0.141 3.859 13 H 0.126 0.874 14 C 0.449 3.551 15 O -0.498 6.498 16 O -0.352 6.352 17 C 0.077 3.923 18 C 0.026 3.974 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.120 0.880 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.029 0.971 43 H 0.028 0.972 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -27.068 2.422 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.123 4.123 4 C -0.169 4.169 5 C -0.159 4.159 6 C 0.369 3.631 7 O -0.381 6.381 8 N -0.339 5.339 9 C -0.076 4.076 10 S -0.029 6.029 11 C -0.205 4.205 12 C 0.034 3.966 13 H 0.144 0.856 14 C 0.288 3.712 15 O -0.385 6.385 16 O -0.268 6.268 17 C 0.005 3.995 18 C -0.011 4.011 19 C -0.566 4.566 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.094 0.906 32 H 0.138 0.862 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.159 0.841 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.687 -27.027 2.582 27.551 hybrid contribution -2.028 1.316 -0.211 2.427 sum 2.659 -25.710 2.372 25.956 Atomic orbital electron populations 1.21714 0.94640 1.01857 1.02560 1.20778 0.96712 0.93159 1.03139 1.23449 0.94854 0.97231 0.96748 1.21278 1.02546 0.93825 0.99232 1.20664 1.02366 0.97601 0.95260 1.18328 0.77353 0.88605 0.78822 1.90869 1.58545 1.48802 1.39928 1.48244 1.41549 1.06455 1.37647 1.24248 0.92214 0.94324 0.96843 1.88390 1.15614 1.05906 1.93034 1.24491 0.99324 0.95534 1.01164 1.20768 0.91443 0.82268 1.02165 0.85615 1.23451 0.89580 0.83471 0.74655 1.90625 1.24481 1.77163 1.46279 1.86499 1.43442 1.18009 1.78862 1.23691 0.85212 0.91590 0.99033 1.19162 0.97780 0.85493 0.98647 1.20932 0.94591 0.92652 1.48428 0.92343 1.24974 0.96108 0.97903 0.95084 1.69957 1.21910 1.12200 1.48757 0.86526 0.82409 0.79166 0.79175 1.20036 1.21073 1.20058 0.92345 0.92302 0.92387 0.90126 0.90561 0.86248 0.91568 0.90595 0.90826 0.88387 0.86152 0.87058 0.84146 0.92359 0.92215 0.95276 0.95325 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.10 -0.62 6.21 -27.89 -0.17 -0.80 16 3 C -0.10 -0.94 8.89 -36.13 -0.32 -1.26 16 4 C -0.17 -1.72 4.49 -102.84 -0.46 -2.18 16 5 C -0.10 -0.77 8.55 36.01 0.31 -0.46 16 6 C 0.58 8.28 5.92 -12.67 -0.07 8.20 16 7 O -0.51 -9.62 16.15 -10.37 -0.17 -9.79 16 8 N -0.60 -7.42 2.74 -170.55 -0.47 -7.89 16 9 C 0.16 1.37 6.90 60.45 0.42 1.79 16 10 S -0.26 -2.42 23.43 -107.50 -2.52 -4.94 16 11 C -0.06 -0.58 6.96 37.98 0.26 -0.32 16 12 C 0.14 1.88 2.93 -68.80 -0.20 1.68 16 13 H 0.13 1.63 8.14 -51.93 -0.42 1.21 16 14 C 0.45 8.09 6.51 36.00 0.23 8.33 16 15 O -0.50 -10.25 14.62 -24.35 -0.36 -10.61 16 16 O -0.35 -7.04 10.12 -39.26 -0.40 -7.44 16 17 C 0.08 1.75 5.41 37.16 0.20 1.95 16 18 C 0.03 0.69 5.35 -27.88 -0.15 0.54 16 19 C -0.53 -14.98 9.11 -34.44 -0.31 -15.29 16 20 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.41 13.29 55.43 0.74 -25.68 16 23 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.40 5.86 -51.93 -0.30 0.09 16 32 H 0.12 1.28 8.05 -52.48 -0.42 0.86 16 33 H 0.07 0.56 7.99 -51.92 -0.42 0.14 16 34 H 0.08 0.52 7.69 -51.93 -0.40 0.12 16 35 H 0.07 0.38 7.87 -51.93 -0.41 -0.03 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.12 0.79 7.57 -51.93 -0.39 0.39 16 38 H 0.11 1.17 7.85 -51.93 -0.41 0.76 16 39 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.29 8.13 -51.93 -0.42 0.87 16 41 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 42 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 382.26 15.07 5.76 5.76 Total: -1.00 -34.58 382.26 -9.37 -43.95 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -6.94 Total: -3.11 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 0.00 Total: 3.22 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.27 Total: -33.57 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.92 Total: -27.83 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -2.52 Total: -4.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.58 -9.37 -43.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171625861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.563 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds