Wall clock time and date at job start Tue Mar 31 2020 14:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.46900 * 2 1 4 4 C 1.32997 * 120.00092 * 123.84583 * 3 2 1 5 5 C 1.50702 * 119.99381 * 354.80952 * 4 3 2 6 6 C 1.47102 * 120.00088 * 174.81241 * 4 3 2 7 7 O 1.21616 * 119.99625 * 108.27062 * 6 4 3 8 8 N 1.34767 * 120.00097 * 288.26705 * 6 4 3 9 9 C 1.47604 * 122.43113 * 355.04895 * 8 6 4 10 10 S 1.84076 * 102.64164 * 204.78783 * 9 8 6 11 11 C 1.84211 * 93.90889 * 326.56727 * 10 9 8 12 12 C 1.45501 * 122.43052 * 175.03192 * 8 6 4 13 13 H 1.08993 * 108.75705 * 57.97198 * 12 8 6 14 14 C 1.50697 * 108.62545 * 299.81953 * 12 8 6 15 15 O 1.20828 * 120.00188 * 357.48472 * 14 12 8 16 16 O 1.34231 * 120.00130 * 177.47990 * 14 12 8 17 17 C 1.45205 * 117.00003 * 180.02562 * 16 14 12 18 18 C 1.53003 * 109.46942 * 180.02562 * 17 16 14 19 19 C 1.50694 * 109.46867 * 180.02562 * 18 17 16 20 20 H 1.08007 * 120.00434 * 359.97438 * 19 18 17 21 21 C 1.37880 * 120.00039 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99775 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00114 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47181 * 60.00140 * 23 21 19 25 25 H 1.48503 * 109.47076 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47128 * 300.00277 * 23 21 19 27 27 H 1.09004 * 109.47351 * 59.99954 * 1 2 3 28 28 H 1.08999 * 109.47336 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47351 * 299.99865 * 1 2 3 30 30 H 1.09004 * 109.46960 * 240.00233 * 2 1 3 31 31 H 1.08996 * 109.47212 * 120.00409 * 2 1 3 32 32 H 1.08003 * 120.00223 * 303.84185 * 3 2 1 33 33 H 1.09009 * 109.46645 * 184.90192 * 5 4 3 34 34 H 1.08997 * 109.47364 * 304.89931 * 5 4 3 35 35 H 1.09007 * 109.46953 * 64.90766 * 5 4 3 36 36 H 1.09003 * 110.77680 * 86.49935 * 9 8 6 37 37 H 1.09000 * 110.78021 * 323.08107 * 9 8 6 38 38 H 1.08999 * 111.04978 * 274.24191 * 11 10 9 39 39 H 1.09001 * 111.05138 * 150.27184 * 11 10 9 40 40 H 1.08997 * 109.46806 * 299.99970 * 17 16 14 41 41 H 1.08994 * 109.47153 * 60.00230 * 17 16 14 42 42 H 1.08995 * 109.46814 * 300.00174 * 18 17 16 43 43 H 1.08994 * 109.46919 * 59.99658 * 18 17 16 44 44 H 0.96996 * 120.00005 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.8587 1.8340 0.9566 5 6 3.2005 0.9187 2.1040 6 6 3.4390 3.1842 0.8946 7 8 3.0630 4.0438 1.6685 8 7 4.3874 3.4688 -0.0196 9 6 4.9595 2.4421 -0.9126 10 16 6.6086 3.1452 -1.3304 11 6 6.0163 4.8890 -1.2864 12 6 4.9214 4.8104 -0.1984 13 1 5.3429 5.1488 0.7480 14 6 3.7914 5.7311 -0.5809 15 8 2.6770 5.2894 -0.7326 16 8 4.0228 7.0421 -0.7531 17 6 2.8873 7.8693 -1.1205 18 6 3.3425 9.3221 -1.2719 19 6 2.1640 10.1806 -1.6526 20 1 1.1879 9.7346 -1.7748 21 6 2.3316 11.5356 -1.8449 22 7 3.5202 12.0787 -1.6965 23 14 0.8709 12.5997 -2.3175 24 1 -0.1674 12.5133 -1.2593 25 1 1.3124 14.0101 -2.4630 26 1 0.3063 12.1217 -3.6051 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.7211 2.1036 -0.7768 33 1 3.8153 1.4558 2.8264 34 1 2.2828 0.5827 2.5866 35 1 3.7509 0.0558 1.7290 36 1 4.3502 2.3262 -1.8089 37 1 5.0656 1.4912 -0.3904 38 1 5.5935 5.1832 -2.2470 39 1 6.8164 5.5668 -0.9886 40 1 2.4729 7.5183 -2.0656 41 1 2.1253 7.8059 -0.3438 42 1 3.7572 9.6732 -0.3270 43 1 4.1044 9.3851 -2.0487 44 1 3.6381 13.0320 -1.8315 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171625861.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:24 Heat of formation + Delta-G solvation = -124.097363 kcal Electronic energy + Delta-G solvation = -25836.333766 eV Core-core repulsion = 22072.728975 eV Total energy + Delta-G solvation = -3763.604791 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22981 -40.82623 -38.11621 -37.31383 -37.22856 -35.51378 -33.39645 -32.48170 -31.87600 -28.68770 -28.06036 -27.31265 -26.15082 -24.77806 -23.20594 -22.56496 -21.21684 -19.77650 -19.29138 -18.64774 -18.45981 -18.05157 -17.57118 -17.39717 -16.75312 -16.51741 -16.12287 -15.77868 -15.45044 -15.05866 -14.80127 -14.74802 -14.51632 -14.40958 -14.24538 -14.08619 -13.58843 -13.41557 -13.22002 -13.13389 -13.09427 -13.04673 -12.80778 -12.66862 -12.62128 -12.43092 -12.25143 -11.80732 -11.74004 -11.59003 -11.56057 -11.38893 -11.06793 -10.64546 -10.26222 -9.96993 -9.02423 -8.30569 -6.44218 0.39842 0.54048 0.67145 0.98113 1.19099 1.38849 1.41929 1.41995 1.50280 1.84927 2.36866 2.86454 3.03676 3.31872 3.40813 3.71168 3.90618 3.96177 4.11623 4.13772 4.15127 4.16527 4.25075 4.27690 4.33506 4.45885 4.59720 4.66120 4.74263 4.76041 4.80396 5.03804 5.05298 5.13587 5.15541 5.32538 5.40866 5.42067 5.49585 5.57510 5.68092 5.81194 6.01864 6.49637 6.68372 6.78017 7.25503 8.81796 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.002877 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.488477 B = 9730.763270 C =11035.444652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.091 4.091 4 C -0.180 4.180 5 C -0.097 4.097 6 C 0.574 3.426 7 O -0.568 6.568 8 N -0.601 5.601 9 C 0.154 3.846 10 S -0.238 6.238 11 C -0.056 4.056 12 C 0.146 3.854 13 H 0.129 0.871 14 C 0.446 3.554 15 O -0.526 6.526 16 O -0.356 6.356 17 C 0.094 3.906 18 C 0.035 3.965 19 C -0.555 4.555 20 H 0.062 0.938 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.973 3.027 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.264 1.264 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.150 0.850 38 H 0.109 0.891 39 H 0.159 0.841 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.005 0.995 43 H 0.014 0.986 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.073 -29.412 1.712 29.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.131 4.131 3 C -0.110 4.110 4 C -0.183 4.183 5 C -0.154 4.154 6 C 0.364 3.636 7 O -0.446 6.446 8 N -0.336 5.336 9 C -0.078 4.078 10 S -0.011 6.011 11 C -0.205 4.205 12 C 0.038 3.962 13 H 0.147 0.853 14 C 0.287 3.713 15 O -0.415 6.415 16 O -0.271 6.271 17 C 0.021 3.979 18 C -0.003 4.003 19 C -0.592 4.592 20 H 0.080 0.920 21 C -0.191 4.191 22 N -0.563 5.563 23 Si 0.796 3.204 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.189 1.189 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.168 0.832 38 H 0.128 0.872 39 H 0.177 0.823 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.023 0.977 43 H 0.032 0.968 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.735 -29.419 1.844 29.855 hybrid contribution -1.997 1.979 -0.006 2.812 sum 2.738 -27.440 1.838 27.637 Atomic orbital electron populations 1.21736 0.95050 1.02727 1.01493 1.20842 0.96182 0.91090 1.05034 1.23542 0.93674 0.98475 0.95336 1.21331 1.03659 0.92332 1.00945 1.20722 1.02934 0.97769 0.93926 1.19138 0.76901 0.89599 0.77958 1.90830 1.60592 1.50813 1.42376 1.48395 1.41087 1.06657 1.37506 1.24559 0.91851 0.94399 0.96981 1.88374 1.15459 1.04306 1.92935 1.24503 0.98787 0.97263 0.99906 1.20922 0.90141 0.81951 1.03223 0.85324 1.24469 0.90685 0.82785 0.73362 1.90606 1.26037 1.77312 1.47523 1.86489 1.42115 1.19303 1.79217 1.23176 0.85505 0.90404 0.98854 1.18956 0.96961 0.87653 0.96699 1.21323 0.95253 0.93643 1.49021 0.92000 1.25941 0.99229 0.99265 0.94620 1.70074 1.24132 1.12829 1.49299 0.85391 0.78534 0.77258 0.79232 1.19329 1.20189 1.18890 0.93240 0.90451 0.93714 0.87951 0.88777 0.88486 0.92891 0.89819 0.87560 0.87300 0.83240 0.87228 0.82319 0.91937 0.93325 0.97657 0.96801 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.89 71.98 0.71 -1.01 16 2 C -0.09 -0.90 6.21 29.85 0.19 -0.71 16 3 C -0.09 -1.53 8.89 24.52 0.22 -1.32 16 4 C -0.18 -3.53 4.49 -18.70 -0.08 -3.62 16 5 C -0.10 -1.26 8.55 71.24 0.61 -0.65 16 6 C 0.57 16.52 5.92 86.57 0.51 17.03 16 7 O -0.57 -22.49 16.15 10.87 0.18 -22.32 16 8 N -0.60 -14.52 2.74 -811.74 -2.23 -16.74 16 9 C 0.15 2.36 6.90 127.56 0.88 3.24 16 10 S -0.24 -3.96 23.43 -56.49 -1.32 -5.29 16 11 C -0.06 -1.10 6.96 72.51 0.50 -0.60 16 12 C 0.15 3.88 2.93 44.96 0.13 4.01 16 13 H 0.13 3.39 8.14 -2.39 -0.02 3.37 16 14 C 0.45 16.53 6.51 71.24 0.46 17.00 16 15 O -0.53 -22.42 14.62 27.31 0.40 -22.02 16 16 O -0.36 -14.69 10.12 -51.43 -0.52 -15.21 16 17 C 0.09 4.41 5.41 71.98 0.39 4.80 16 18 C 0.03 1.89 5.35 29.85 0.16 2.05 16 19 C -0.55 -32.10 9.11 25.60 0.23 -31.86 16 20 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 21 C 0.01 0.51 5.46 84.66 0.46 0.97 16 22 N -0.92 -55.65 13.29 21.45 0.28 -55.37 16 23 Si 0.97 44.14 29.54 68.60 2.03 46.17 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.61 5.86 -2.39 -0.01 0.59 16 32 H 0.10 2.08 8.05 -2.91 -0.02 2.05 16 33 H 0.05 0.84 7.99 -2.38 -0.02 0.82 16 34 H 0.08 0.96 7.69 -2.39 -0.02 0.94 16 35 H 0.11 0.66 7.87 -2.38 -0.02 0.64 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.15 1.45 7.57 -2.39 -0.02 1.43 16 38 H 0.11 2.22 7.85 -2.39 -0.02 2.20 16 39 H 0.16 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.06 2.86 8.13 -2.39 -0.02 2.84 16 41 H 0.05 2.37 8.13 -2.39 -0.02 2.35 16 42 H 0.01 0.29 8.14 -2.39 -0.02 0.28 16 43 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -77.54 382.26 5.18 -72.36 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.98 Total: 9.08 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.38 Total: 9.34 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -1.94 Total: -72.11 kcal Atomic # 8 Polarization: -59.60 SS G_CDS: 0.05 Total: -59.55 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -1.32 Total: -5.29 kcal Total: -77.54 5.18 -72.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171625861.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.734 kcal (2) G-P(sol) polarization free energy of solvation -77.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds