Wall clock time and date at job start Tue Mar 31 2020 15:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46984 * 2 1 4 4 H 1.08995 * 109.47311 * 304.99502 * 3 2 1 5 5 C 1.53004 * 109.47277 * 65.00079 * 3 2 1 6 6 C 1.53007 * 109.46996 * 184.99858 * 3 2 1 7 7 S 1.81399 * 109.46954 * 174.99774 * 6 3 2 8 8 O 1.42103 * 110.54033 * 68.37918 * 7 6 3 9 9 O 1.42096 * 110.54647 * 291.62463 * 7 6 3 10 10 N 1.65606 * 104.44835 * 180.02562 * 7 6 3 11 11 C 1.46496 * 119.99903 * 64.99995 * 10 7 6 12 12 C 1.50694 * 109.47257 * 164.99859 * 11 10 7 13 13 C 1.38299 * 119.93493 * 269.73312 * 12 11 10 14 14 C 1.38099 * 120.06946 * 179.72863 * 13 12 11 15 15 C 1.38875 * 119.93098 * 0.55921 * 14 13 12 16 16 O 1.35759 * 120.06969 * 179.68688 * 15 14 13 17 17 C 1.34822 * 116.99894 * 174.48688 * 16 15 14 18 18 H 1.08001 * 120.00509 * 5.05830 * 17 16 15 19 19 C 1.38656 * 119.99918 * 185.05729 * 17 16 15 20 20 N 1.31554 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00116 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47271 * 89.99692 * 21 19 17 23 23 H 1.48496 * 109.46977 * 210.00093 * 21 19 17 24 24 H 1.48507 * 109.46980 * 329.99710 * 21 19 17 25 25 C 1.38878 * 119.86266 * 359.71098 * 15 14 13 26 26 C 1.38100 * 119.93069 * 359.97438 * 25 15 14 27 27 H 1.09002 * 109.46935 * 299.99827 * 1 2 3 28 28 H 1.08993 * 109.46929 * 60.00137 * 1 2 3 29 29 H 1.09000 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47258 * 239.99665 * 2 1 3 31 31 H 1.09006 * 109.46838 * 119.99612 * 2 1 3 32 32 H 1.09005 * 109.47152 * 59.99974 * 5 3 2 33 33 H 1.08995 * 109.47011 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47037 * 300.00159 * 5 3 2 35 35 H 1.08999 * 109.47003 * 54.99923 * 6 3 2 36 36 H 1.08999 * 109.47347 * 295.00031 * 6 3 2 37 37 H 0.97001 * 120.00357 * 245.00531 * 10 7 6 38 38 H 1.09005 * 109.47347 * 285.00410 * 11 10 7 39 39 H 1.09004 * 109.47143 * 45.00169 * 11 10 7 40 40 H 1.07998 * 119.96533 * 359.97070 * 13 12 11 41 41 H 1.08004 * 120.03393 * 180.27500 * 14 13 12 42 42 H 0.96996 * 120.00030 * 180.02562 * 20 19 17 43 43 H 1.08006 * 120.03312 * 179.97438 * 25 15 14 44 44 H 1.08000 * 119.96546 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5649 1.4443 -0.1257 7 16 4.1573 3.1524 -0.2744 8 8 3.9597 3.8565 0.9440 9 8 3.7570 3.7126 -1.5175 10 7 5.8022 3.0096 -0.4023 11 6 6.3914 2.3464 -1.5681 12 6 7.8631 2.6636 -1.6359 13 6 8.2987 3.7706 -2.3412 14 6 9.6462 4.0669 -2.4005 15 6 10.5652 3.2455 -1.7607 16 8 11.8911 3.5306 -1.8224 17 6 12.7177 2.7605 -1.0867 18 1 12.3269 1.9094 -0.5488 19 6 14.0696 3.0613 -1.0205 20 7 14.5456 4.0983 -1.6752 21 14 15.2151 1.9939 -0.0016 22 1 15.7540 0.8986 -0.8473 23 1 16.3367 2.8209 0.5113 24 1 14.4651 1.4136 1.1413 25 6 10.1251 2.1314 -1.0579 26 6 8.7757 1.8440 -0.9969 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.0699 1.5875 2.1492 33 1 1.9990 3.1540 1.3075 34 1 0.5490 2.1252 1.3970 35 1 3.8571 0.8800 -1.0113 36 1 4.0030 0.9836 0.7597 37 1 6.3755 3.3651 0.2948 38 1 6.2557 1.2685 -1.4801 39 1 5.9011 2.7016 -2.4745 40 1 7.5840 4.4061 -2.8428 41 1 9.9854 4.9341 -2.9477 42 1 15.4914 4.3084 -1.6291 43 1 10.8374 1.4905 -0.5596 44 1 8.4329 0.9776 -0.4509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172097455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:28 Heat of formation + Delta-G solvation = -94.902969 kcal Electronic energy + Delta-G solvation = -25011.939537 eV Core-core repulsion = 21249.600710 eV Total energy + Delta-G solvation = -3762.338827 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.19093 -37.50980 -37.25017 -37.00238 -36.01760 -34.68592 -32.35196 -31.19485 -30.28139 -29.53017 -27.85780 -25.80190 -24.54429 -24.25273 -22.06373 -20.76296 -20.63001 -19.40308 -18.10628 -17.78632 -17.16530 -16.73416 -16.22101 -15.68105 -15.13902 -15.01417 -14.74164 -14.57144 -14.18582 -13.88387 -13.81409 -13.62733 -13.53847 -13.10148 -12.81279 -12.74135 -12.54817 -12.48729 -12.15122 -12.13312 -12.07772 -11.90605 -11.72561 -11.67052 -11.33837 -11.27889 -11.05031 -10.89256 -10.79533 -10.72235 -10.54302 -10.48550 -9.50466 -9.39192 -8.91919 -8.28660 -7.32835 -6.53251 -4.12086 0.13103 2.06339 2.12997 2.77908 3.07858 3.08951 3.13660 3.61434 3.89752 3.98211 4.11168 4.37715 4.40492 4.48027 4.79178 4.92339 4.96402 5.01143 5.03159 5.09004 5.15770 5.19205 5.25447 5.31161 5.52717 5.53791 5.59373 5.59678 5.62715 5.65893 5.76014 5.88292 5.94409 5.97663 6.12621 6.33041 6.60101 6.80171 6.92151 7.01504 7.15926 7.25714 7.34688 7.71478 7.91269 8.91921 9.60468 10.64260 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.002179 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.400858 B =12847.689546 C =13269.688003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.112 4.112 3 C -0.080 4.080 4 H 0.084 0.916 5 C -0.182 4.182 6 C -0.629 4.629 7 S 2.608 3.392 8 O -0.959 6.959 9 O -0.958 6.958 10 N -1.114 6.114 11 C 0.173 3.827 12 C -0.206 4.206 13 C -0.054 4.054 14 C -0.194 4.194 15 C 0.160 3.840 16 O -0.173 6.173 17 C -0.393 4.393 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.859 5.859 21 Si 0.943 3.057 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.237 4.237 26 C -0.054 4.054 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.420 0.580 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.271 0.729 43 H 0.128 0.872 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.930 -8.574 3.800 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.150 4.150 3 C -0.100 4.100 4 H 0.102 0.898 5 C -0.240 4.240 6 C -0.758 4.758 7 S 2.701 3.299 8 O -0.950 6.950 9 O -0.948 6.948 10 N -0.874 5.874 11 C 0.048 3.952 12 C -0.209 4.209 13 C -0.073 4.073 14 C -0.214 4.214 15 C 0.105 3.895 16 O -0.076 6.076 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.257 4.257 26 C -0.073 4.073 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.255 0.745 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.133 0.867 41 H 0.137 0.863 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.161 -7.549 3.478 24.608 hybrid contribution 1.135 -1.241 0.851 1.885 sum -22.026 -8.790 4.330 24.107 Atomic orbital electron populations 1.21867 0.95503 1.01890 1.02250 1.21532 0.96099 0.94837 1.02561 1.20906 0.90331 0.99029 0.99756 0.89774 1.22358 1.02936 1.01992 0.96672 1.30730 1.06217 1.27020 1.11804 1.05020 0.73420 0.77135 0.74364 1.93586 1.84458 1.70161 1.46749 1.93596 1.81869 1.74740 1.44614 1.55747 1.25112 1.74453 1.32110 1.20000 0.92403 0.95498 0.87272 1.19071 0.92912 1.00556 1.08315 1.20574 0.94429 0.95435 0.96829 1.20235 0.91766 1.02074 1.07313 1.19445 0.85405 0.92260 0.92391 1.83981 1.11192 1.53117 1.59298 1.21346 0.88459 1.09533 1.27602 0.88936 1.25326 0.96637 0.97047 0.97521 1.70034 1.14779 1.25375 1.39110 0.85689 0.79341 0.78946 0.79315 1.19818 1.20191 1.19160 1.21148 0.95903 1.00970 1.07662 1.20614 0.92535 0.97498 0.96641 0.92227 0.92484 0.92530 0.91543 0.91505 0.91474 0.90684 0.91086 0.84965 0.84778 0.74490 0.92060 0.90330 0.86727 0.86330 0.91872 0.85429 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.11 -0.68 5.40 -26.73 -0.14 -0.82 16 3 C -0.08 -0.59 2.39 -90.62 -0.22 -0.80 16 4 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.18 -1.41 8.64 37.16 0.32 -1.09 16 6 C -0.63 -4.47 5.51 37.16 0.20 -4.27 16 7 S 2.61 28.06 5.11 -107.50 -0.55 27.51 16 8 O -0.96 -12.81 15.83 -57.54 -0.91 -13.72 16 9 O -0.96 -13.45 17.49 -57.54 -1.01 -14.45 16 10 N -1.11 -12.35 5.88 -11.66 -0.07 -12.42 16 11 C 0.17 2.02 6.25 -5.20 -0.03 1.99 16 12 C -0.21 -3.18 5.28 -104.58 -0.55 -3.73 16 13 C -0.05 -0.92 9.69 -39.61 -0.38 -1.30 16 14 C -0.19 -3.96 9.99 -39.40 -0.39 -4.35 16 15 C 0.16 3.71 6.65 -39.11 -0.26 3.45 16 16 O -0.17 -4.81 9.76 0.05 0.00 -4.81 16 17 C -0.39 -10.66 9.49 30.89 0.29 -10.37 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 21 Si 0.94 19.96 29.55 -169.99 -5.02 14.93 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 25 C -0.24 -4.83 9.17 -39.40 -0.36 -5.20 16 26 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 27 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.70 5.61 -51.93 -0.29 0.41 16 34 H 0.07 0.45 6.56 -51.93 -0.34 0.10 16 35 H 0.13 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.13 0.75 8.14 -51.92 -0.42 0.33 16 37 H 0.42 4.70 8.61 -34.48 -0.30 4.41 16 38 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 39 H 0.08 0.90 7.63 -51.93 -0.40 0.50 16 40 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.12 2.35 8.06 -52.48 -0.42 1.93 16 42 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 43 H 0.13 2.61 5.64 -52.48 -0.30 2.31 16 44 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -33.49 373.45 -9.26 -42.75 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -6.44 Total: 5.78 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -1.65 Total: -27.30 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.69 Total: -36.32 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -1.92 Total: -32.98 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 28.06 SS G_CDS: -0.55 Total: 27.51 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.49 -9.26 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172097455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.152 kcal (2) G-P(sol) polarization free energy of solvation -33.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds