Wall clock time and date at job start Tue Mar 31 2020 15:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46984 * 2 1 4 4 H 1.08995 * 109.47311 * 304.99502 * 3 2 1 5 5 C 1.53004 * 109.47277 * 65.00079 * 3 2 1 6 6 C 1.53007 * 109.46996 * 184.99858 * 3 2 1 7 7 S 1.81399 * 109.46954 * 174.99774 * 6 3 2 8 8 O 1.42103 * 110.54033 * 68.37918 * 7 6 3 9 9 O 1.42096 * 110.54647 * 291.62463 * 7 6 3 10 10 N 1.65606 * 104.44835 * 180.02562 * 7 6 3 11 11 C 1.46496 * 119.99903 * 64.99995 * 10 7 6 12 12 C 1.50694 * 109.47257 * 164.99859 * 11 10 7 13 13 C 1.38299 * 119.93493 * 269.73312 * 12 11 10 14 14 C 1.38099 * 120.06946 * 179.72863 * 13 12 11 15 15 C 1.38875 * 119.93098 * 0.55921 * 14 13 12 16 16 O 1.35759 * 120.06969 * 179.68688 * 15 14 13 17 17 C 1.34822 * 116.99894 * 174.48688 * 16 15 14 18 18 H 1.08001 * 120.00509 * 5.05830 * 17 16 15 19 19 C 1.38656 * 119.99918 * 185.05729 * 17 16 15 20 20 N 1.31554 * 120.00050 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00116 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47271 * 89.99692 * 21 19 17 23 23 H 1.48496 * 109.46977 * 210.00093 * 21 19 17 24 24 H 1.48507 * 109.46980 * 329.99710 * 21 19 17 25 25 C 1.38878 * 119.86266 * 359.71098 * 15 14 13 26 26 C 1.38100 * 119.93069 * 359.97438 * 25 15 14 27 27 H 1.09002 * 109.46935 * 299.99827 * 1 2 3 28 28 H 1.08993 * 109.46929 * 60.00137 * 1 2 3 29 29 H 1.09000 * 109.46981 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47258 * 239.99665 * 2 1 3 31 31 H 1.09006 * 109.46838 * 119.99612 * 2 1 3 32 32 H 1.09005 * 109.47152 * 59.99974 * 5 3 2 33 33 H 1.08995 * 109.47011 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.47037 * 300.00159 * 5 3 2 35 35 H 1.08999 * 109.47003 * 54.99923 * 6 3 2 36 36 H 1.08999 * 109.47347 * 295.00031 * 6 3 2 37 37 H 0.97001 * 120.00357 * 245.00531 * 10 7 6 38 38 H 1.09005 * 109.47347 * 285.00410 * 11 10 7 39 39 H 1.09004 * 109.47143 * 45.00169 * 11 10 7 40 40 H 1.07998 * 119.96533 * 359.97070 * 13 12 11 41 41 H 1.08004 * 120.03393 * 180.27500 * 14 13 12 42 42 H 0.96996 * 120.00030 * 180.02562 * 20 19 17 43 43 H 1.08006 * 120.03312 * 179.97438 * 25 15 14 44 44 H 1.08000 * 119.96546 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6353 2.1266 1.3074 6 6 3.5649 1.4443 -0.1257 7 16 4.1573 3.1524 -0.2744 8 8 3.9597 3.8565 0.9440 9 8 3.7570 3.7126 -1.5175 10 7 5.8022 3.0096 -0.4023 11 6 6.3914 2.3464 -1.5681 12 6 7.8631 2.6636 -1.6359 13 6 8.2987 3.7706 -2.3412 14 6 9.6462 4.0669 -2.4005 15 6 10.5652 3.2455 -1.7607 16 8 11.8911 3.5306 -1.8224 17 6 12.7177 2.7605 -1.0867 18 1 12.3269 1.9094 -0.5488 19 6 14.0696 3.0613 -1.0205 20 7 14.5456 4.0983 -1.6752 21 14 15.2151 1.9939 -0.0016 22 1 15.7540 0.8986 -0.8473 23 1 16.3367 2.8209 0.5113 24 1 14.4651 1.4136 1.1413 25 6 10.1251 2.1314 -1.0579 26 6 8.7757 1.8440 -0.9969 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 2.0699 1.5875 2.1492 33 1 1.9990 3.1540 1.3075 34 1 0.5490 2.1252 1.3970 35 1 3.8571 0.8800 -1.0113 36 1 4.0030 0.9836 0.7597 37 1 6.3755 3.3651 0.2948 38 1 6.2557 1.2685 -1.4801 39 1 5.9011 2.7016 -2.4745 40 1 7.5840 4.4061 -2.8428 41 1 9.9854 4.9341 -2.9477 42 1 15.4914 4.3084 -1.6291 43 1 10.8374 1.4905 -0.5596 44 1 8.4329 0.9776 -0.4509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172097455.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:28 Heat of formation + Delta-G solvation = -118.598125 kcal Electronic energy + Delta-G solvation = -25012.967036 eV Core-core repulsion = 21249.600710 eV Total energy + Delta-G solvation = -3763.366326 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.81309 -38.68746 -38.16450 -37.92106 -36.94681 -35.83491 -34.24392 -31.80389 -31.65974 -30.92312 -28.44083 -27.57739 -25.87626 -24.73656 -23.62471 -22.18757 -21.20116 -20.24229 -19.85502 -18.95629 -18.54264 -17.70623 -17.09481 -16.48222 -16.44727 -16.23543 -15.86158 -15.58271 -15.54408 -15.38374 -15.07613 -14.45914 -14.37309 -14.27532 -14.11243 -13.89725 -13.58733 -13.46548 -13.27192 -13.05039 -12.99341 -12.92546 -12.73398 -12.47999 -12.39972 -12.33783 -12.30538 -12.14627 -12.05079 -11.78586 -11.47917 -11.23949 -11.16004 -10.80254 -10.30386 -9.78490 -8.98171 -8.47467 -6.15791 -0.67941 0.59774 0.62077 1.35858 1.44718 1.53446 1.88336 2.17667 2.81356 2.88030 3.16857 3.29259 3.50573 3.52767 3.77780 3.86981 3.91925 4.07466 4.20831 4.31742 4.43368 4.49970 4.51662 4.58924 4.60790 4.61502 4.69256 4.79322 4.82583 5.01122 5.05970 5.07559 5.11442 5.15672 5.16999 5.23530 5.30433 5.41730 5.52129 5.56445 5.71165 5.77930 6.02521 6.09992 6.21193 6.97195 7.77846 8.75643 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.026152 B = 0.002179 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.400858 B =12847.689546 C =13269.688003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.088 4.088 4 H 0.081 0.919 5 C -0.189 4.189 6 C -0.604 4.604 7 S 2.610 3.390 8 O -0.992 6.992 9 O -0.998 6.998 10 N -1.117 6.117 11 C 0.169 3.831 12 C -0.175 4.175 13 C -0.054 4.054 14 C -0.210 4.210 15 C 0.118 3.882 16 O -0.233 6.233 17 C -0.412 4.412 18 H 0.106 0.894 19 C -0.025 4.025 20 N -0.921 5.921 21 Si 1.020 2.980 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.251 1.251 25 C -0.245 4.245 26 C -0.045 4.045 27 H 0.059 0.941 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.420 0.580 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.140 0.860 41 H 0.109 0.891 42 H 0.272 0.728 43 H 0.122 0.878 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.912 -12.008 4.960 28.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.148 4.148 3 C -0.108 4.108 4 H 0.100 0.900 5 C -0.246 4.246 6 C -0.737 4.737 7 S 2.708 3.292 8 O -0.982 6.982 9 O -0.988 6.988 10 N -0.876 5.876 11 C 0.044 3.956 12 C -0.178 4.178 13 C -0.073 4.073 14 C -0.229 4.229 15 C 0.067 3.933 16 O -0.139 6.139 17 C -0.488 4.488 18 H 0.123 0.877 19 C -0.223 4.223 20 N -0.559 5.559 21 Si 0.839 3.161 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.174 1.174 25 C -0.264 4.264 26 C -0.063 4.063 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.254 0.746 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.158 0.842 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.140 0.860 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.191 -10.951 4.630 28.763 hybrid contribution 1.554 -0.214 0.459 1.635 sum -24.637 -11.165 5.089 27.523 Atomic orbital electron populations 1.21902 0.95425 1.02346 1.02221 1.21538 0.96230 0.93647 1.03402 1.21019 0.90402 1.00041 0.99335 0.90047 1.22421 1.03797 1.00938 0.97458 1.30531 1.06012 1.22681 1.14491 1.04775 0.72881 0.78680 0.72883 1.93549 1.84642 1.72406 1.47628 1.93547 1.82213 1.76999 1.46012 1.55566 1.25268 1.74928 1.31844 1.20200 0.89055 0.98353 0.87989 1.19590 0.95400 0.98222 1.04561 1.20947 0.93181 0.96384 0.96769 1.20439 0.93114 1.01902 1.07484 1.20002 0.84608 0.94252 0.94429 1.83950 1.13192 1.55024 1.61743 1.21851 0.89119 1.10006 1.27861 0.87714 1.26636 0.98236 0.98581 0.98833 1.70189 1.15169 1.28288 1.42266 0.84564 0.76715 0.76964 0.77828 1.18752 1.19895 1.17426 1.21307 0.97891 0.99986 1.07247 1.21055 0.90635 0.98691 0.95963 0.92204 0.92686 0.91847 0.90615 0.90714 0.90655 0.92747 0.90090 0.82088 0.82277 0.74557 0.87518 0.89628 0.84223 0.87317 0.91878 0.86004 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.67 71.98 0.70 -0.59 16 2 C -0.11 -0.87 5.40 30.60 0.17 -0.71 16 3 C -0.09 -0.97 2.39 -10.79 -0.03 -1.00 16 4 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 5 C -0.19 -2.46 8.64 71.98 0.62 -1.84 16 6 C -0.60 -5.66 5.51 71.98 0.40 -5.26 16 7 S 2.61 48.94 5.11 -56.49 -0.29 48.65 16 8 O -0.99 -25.11 15.83 -127.65 -2.02 -27.13 16 9 O -1.00 -26.01 17.49 -127.65 -2.23 -28.24 16 10 N -1.12 -20.48 5.88 -190.80 -1.12 -21.60 16 11 C 0.17 3.06 6.25 85.63 0.54 3.60 16 12 C -0.18 -4.77 5.28 -19.84 -0.10 -4.87 16 13 C -0.05 -1.75 9.69 22.25 0.22 -1.54 16 14 C -0.21 -8.80 9.99 22.39 0.22 -8.57 16 15 C 0.12 5.69 6.65 22.58 0.15 5.84 16 16 O -0.23 -13.81 9.76 -22.75 -0.22 -14.04 16 17 C -0.41 -23.50 9.49 67.92 0.64 -22.85 16 18 H 0.11 5.39 5.20 -2.91 -0.02 5.37 16 19 C -0.03 -1.43 5.49 84.83 0.47 -0.96 16 20 N -0.92 -56.24 13.67 21.61 0.30 -55.95 16 21 Si 1.02 42.00 29.55 68.60 2.03 44.03 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.25 -9.47 7.11 99.48 0.71 -8.77 16 25 C -0.25 -9.86 9.17 22.39 0.21 -9.66 16 26 C -0.04 -1.32 9.69 22.25 0.22 -1.10 16 27 H 0.06 0.46 6.57 -2.39 -0.02 0.45 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.05 0.95 5.61 -2.39 -0.01 0.93 16 34 H 0.08 0.85 6.56 -2.39 -0.02 0.84 16 35 H 0.16 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.16 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.42 8.06 8.61 -96.74 -0.83 7.22 16 38 H 0.11 1.09 8.08 -2.38 -0.02 1.07 16 39 H 0.09 1.53 7.63 -2.38 -0.02 1.51 16 40 H 0.14 3.82 8.06 -2.91 -0.02 3.80 16 41 H 0.11 4.62 8.06 -2.91 -0.02 4.59 16 42 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 43 H 0.12 4.97 5.64 -2.91 -0.02 4.96 16 44 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -79.98 373.45 1.02 -78.96 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.18 Total: 24.82 kcal Atomic # 6 Polarization: -53.91 SS G_CDS: 4.41 Total: -49.50 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: -0.83 Total: -77.55 kcal Atomic # 8 Polarization: -64.93 SS G_CDS: -4.48 Total: -69.41 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 48.94 SS G_CDS: -0.29 Total: 48.65 kcal Total: -79.98 1.02 -78.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172097455.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.643 kcal (2) G-P(sol) polarization free energy of solvation -79.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds