Wall clock time and date at job start Tue Mar 31 2020 14:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47008 * 2 1 4 4 C 1.38282 * 119.91609 * 89.99810 * 3 2 1 5 5 C 1.38257 * 120.17876 * 180.02562 * 4 3 2 6 6 C 1.38533 * 120.01984 * 359.97438 * 5 4 3 7 7 O 1.35975 * 120.08466 * 179.97438 * 6 5 4 8 8 C 1.39321 * 119.83807 * 359.97438 * 6 5 4 9 9 N 1.40050 * 120.09464 * 179.97438 * 8 6 5 10 10 C 1.34773 * 119.99827 * 205.08767 * 9 8 6 11 11 O 1.21615 * 120.00272 * 5.56283 * 10 9 8 12 12 C 1.47514 * 119.99832 * 185.55962 * 10 9 8 13 13 C 1.39670 * 120.19766 * 0.02562 * 12 10 9 14 14 C 1.37824 * 119.92048 * 180.02562 * 13 12 10 15 15 C 1.38573 * 120.32045 * 359.97438 * 14 13 12 16 16 C 1.38031 * 120.40573 * 359.97438 * 15 14 13 17 17 C 1.38830 * 120.07355 * 0.02809 * 16 15 14 18 18 O 1.35519 * 120.16143 * 179.97438 * 17 16 15 19 19 C 1.34815 * 117.00162 * 354.84761 * 18 17 16 20 20 H 1.08003 * 119.99560 * 5.01283 * 19 18 17 21 21 C 1.38689 * 120.00002 * 185.01832 * 19 18 17 22 22 N 1.31520 * 120.00456 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47191 * 59.99630 * 23 21 19 25 25 H 1.48501 * 109.47003 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46619 * 299.99650 * 23 21 19 27 27 C 1.38199 * 119.91824 * 270.23718 * 3 2 1 28 28 H 1.09005 * 109.47280 * 299.99416 * 1 2 3 29 29 H 1.09001 * 109.47462 * 60.00078 * 1 2 3 30 30 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47280 * 240.00584 * 2 1 3 32 32 H 1.08992 * 109.47522 * 120.00164 * 2 1 3 33 33 H 1.07995 * 119.90919 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.98501 * 179.97438 * 5 4 3 35 35 H 0.96703 * 113.99945 * 270.02421 * 7 6 5 36 36 H 0.96997 * 120.00082 * 25.08181 * 9 8 6 37 37 H 1.08004 * 120.03908 * 359.97438 * 13 12 10 38 38 H 1.07997 * 119.83941 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.79886 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.96126 * 179.75324 * 16 15 14 41 41 H 0.97000 * 120.00604 * 180.02562 * 22 21 19 42 42 H 1.08005 * 120.00880 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0711 1.1986 5 6 2.7224 3.3747 1.2049 6 6 2.9553 4.0333 0.0086 7 8 3.4075 5.3157 0.0133 8 6 2.7250 3.3786 -1.1994 9 7 2.9581 4.0395 -2.4120 10 6 2.2996 3.6586 -3.5244 11 8 1.4305 2.8106 -3.4564 12 6 2.6329 4.2703 -4.8247 13 6 3.6306 5.2443 -4.9077 14 6 3.9370 5.8124 -6.1254 15 6 3.2601 5.4219 -7.2698 16 6 2.2726 4.4599 -7.2033 17 6 1.9504 3.8766 -5.9853 18 8 0.9807 2.9323 -5.9178 19 6 0.2927 2.6796 -7.0493 20 1 0.5777 3.1606 -7.9734 21 6 -0.7809 1.8019 -7.0267 22 7 -1.1277 1.2158 -5.9015 23 14 -1.7338 1.4511 -8.5947 24 1 -0.8188 0.8724 -9.6111 25 1 -2.8251 0.4865 -8.3054 26 1 -2.3147 2.7153 -9.1142 27 6 2.2573 2.0723 -1.1978 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.0815 1.5591 2.1322 34 1 2.9005 3.8797 2.1428 35 1 2.7052 5.9804 0.0146 36 1 3.5935 4.7714 -2.4511 37 1 4.1608 5.5523 -4.0186 38 1 4.7084 6.5657 -6.1881 39 1 3.5074 5.8724 -8.2197 40 1 1.7468 4.1637 -8.0990 41 1 -1.8784 0.6018 -5.8857 42 1 2.0737 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174080851.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:41 Heat of formation + Delta-G solvation = -51.030119 kcal Electronic energy + Delta-G solvation = -27313.270247 eV Core-core repulsion = 23417.389939 eV Total energy + Delta-G solvation = -3895.880309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48674 -39.32284 -38.00236 -36.96773 -36.43046 -34.40303 -32.92002 -32.41464 -31.02101 -29.31790 -28.97437 -28.12588 -25.47424 -23.83531 -23.60687 -22.42895 -21.53058 -20.69365 -19.87648 -18.54087 -18.08698 -17.61804 -16.51258 -16.35381 -15.64134 -15.36871 -14.72322 -14.56797 -14.47039 -14.30238 -14.19074 -13.85352 -13.68315 -13.43267 -13.26651 -13.17685 -12.79516 -12.59640 -12.18324 -12.07628 -11.77722 -11.63419 -11.37184 -11.18906 -10.94700 -10.91175 -10.88264 -10.79121 -10.65603 -10.52998 -10.03796 -9.62913 -8.94816 -8.92094 -8.39412 -8.36974 -7.69235 -7.38275 -6.51714 -4.11475 1.30392 1.49391 1.73526 2.24803 3.07807 3.09695 3.12285 3.44649 3.48599 3.86720 3.87969 4.33649 4.55236 4.92277 4.96046 4.98895 5.09191 5.27776 5.34129 5.41229 5.44613 5.57476 5.61479 5.66088 5.73935 5.85662 5.96271 6.03719 6.05174 6.12289 6.25924 6.37398 6.47272 6.48327 6.50556 6.60588 6.70575 6.82839 6.91511 6.98441 7.15671 7.16510 7.22169 7.61054 7.71093 7.82106 7.92247 8.82717 8.88830 9.57915 10.61633 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.004417 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.822208 B = 6337.549374 C = 8783.908097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.066 4.066 4 C -0.135 4.135 5 C -0.121 4.121 6 C 0.051 3.949 7 O -0.497 6.497 8 C 0.152 3.848 9 N -0.677 5.677 10 C 0.552 3.448 11 O -0.479 6.479 12 C -0.232 4.232 13 C -0.036 4.036 14 C -0.229 4.229 15 C -0.048 4.048 16 C -0.236 4.236 17 C 0.191 3.809 18 O -0.122 6.122 19 C -0.404 4.404 20 H 0.094 0.906 21 C 0.046 3.954 22 N -0.830 5.830 23 Si 0.941 3.059 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.268 1.268 27 C -0.118 4.118 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.383 0.617 36 H 0.408 0.592 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.133 0.867 41 H 0.273 0.727 42 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 4.388 9.289 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.066 4.066 4 C -0.154 4.154 5 C -0.140 4.140 6 C 0.003 3.997 7 O -0.306 6.306 8 C 0.055 3.945 9 N -0.323 5.323 10 C 0.343 3.657 11 O -0.352 6.352 12 C -0.237 4.237 13 C -0.055 4.055 14 C -0.248 4.248 15 C -0.067 4.067 16 C -0.255 4.255 17 C 0.130 3.870 18 O -0.020 6.020 19 C -0.480 4.480 20 H 0.112 0.888 21 C -0.162 4.162 22 N -0.461 5.461 23 Si 0.765 3.235 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.193 1.193 27 C -0.139 4.139 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.238 0.762 36 H 0.244 0.756 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.083 0.917 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.253 3.149 9.505 11.805 hybrid contribution -0.494 0.713 -0.873 1.231 sum 5.758 3.862 8.631 11.071 Atomic orbital electron populations 1.21747 0.94491 1.01636 1.02610 1.20514 0.96497 0.92334 1.02581 1.19846 0.97927 0.96404 0.92449 1.20778 1.02484 0.94650 0.97522 1.21057 1.00520 0.95683 0.96784 1.18057 1.05006 0.85574 0.91021 1.84817 1.36020 1.13385 1.96379 1.18167 0.99019 0.92317 0.85004 1.43554 1.44702 1.37156 1.06845 1.18426 0.81118 0.82816 0.83306 1.90911 1.28902 1.30271 1.85138 1.18671 1.06547 1.07421 0.91051 1.20782 0.94020 0.93394 0.97318 1.20472 1.05422 1.06047 0.92859 1.20930 0.93622 0.94532 0.97577 1.21166 1.03360 1.02891 0.98105 1.19223 0.88681 0.87275 0.91773 1.84151 1.38451 1.43805 1.35570 1.21465 1.11757 1.28012 0.86743 0.88835 1.25384 0.96290 0.95650 0.98885 1.70103 1.25539 1.24916 1.25564 0.85794 0.79035 0.78833 0.79861 1.19311 1.20095 1.19321 1.21412 1.00105 0.92472 0.99872 0.92949 0.91593 0.92576 0.90793 0.91350 0.86078 0.85600 0.76191 0.75564 0.86970 0.87089 0.87028 0.84943 0.91711 0.82767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.89 37.16 0.37 -1.61 16 2 C -0.08 -1.09 6.06 -27.88 -0.17 -1.26 16 3 C -0.07 -0.99 5.13 -104.62 -0.54 -1.53 16 4 C -0.14 -1.75 9.69 -39.56 -0.38 -2.14 16 5 C -0.12 -1.56 9.98 -39.47 -0.39 -1.96 16 6 C 0.05 0.73 6.72 -39.07 -0.26 0.47 16 7 O -0.50 -6.04 12.92 -19.66 -0.25 -6.29 16 8 C 0.15 2.59 6.45 -83.51 -0.54 2.05 16 9 N -0.68 -11.67 5.23 -10.69 -0.06 -11.72 16 10 C 0.55 11.95 7.57 -12.48 -0.09 11.85 16 11 O -0.48 -12.48 12.33 -16.59 -0.20 -12.69 16 12 C -0.23 -4.93 5.89 -104.81 -0.62 -5.55 16 13 C -0.04 -0.61 9.53 -39.20 -0.37 -0.99 16 14 C -0.23 -3.67 10.02 -39.61 -0.40 -4.06 16 15 C -0.05 -0.82 10.03 -39.53 -0.40 -1.22 16 16 C -0.24 -4.92 9.16 -39.44 -0.36 -5.28 16 17 C 0.19 4.60 6.66 -38.60 -0.26 4.34 16 18 O -0.12 -3.49 7.84 -21.06 -0.16 -3.65 16 19 C -0.40 -11.12 9.49 30.90 0.29 -10.83 16 20 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 21 C 0.05 1.25 5.49 -17.52 -0.10 1.16 16 22 N -0.83 -24.29 13.67 55.48 0.76 -23.53 16 23 Si 0.94 20.02 29.55 -169.99 -5.02 15.00 16 24 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 26 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 27 C -0.12 -2.14 8.37 -39.41 -0.33 -2.47 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 32 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.38 3.18 9.06 45.56 0.41 3.59 16 36 H 0.41 5.85 6.40 -40.82 -0.26 5.59 16 37 H 0.11 1.49 6.42 -52.48 -0.34 1.16 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 2.71 5.63 -52.49 -0.30 2.42 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.15 3.29 5.78 -52.48 -0.30 2.99 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -33.35 358.63 -8.08 -41.42 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -3.99 Total: 15.08 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -4.55 Total: -19.01 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.70 Total: -35.25 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.62 Total: -22.63 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.35 -8.08 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174080851.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.606 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds