Wall clock time and date at job start Tue Mar 31 2020 14:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47008 * 2 1 4 4 C 1.38282 * 119.91609 * 89.99810 * 3 2 1 5 5 C 1.38257 * 120.17876 * 180.02562 * 4 3 2 6 6 C 1.38533 * 120.01984 * 359.97438 * 5 4 3 7 7 O 1.35975 * 120.08466 * 179.97438 * 6 5 4 8 8 C 1.39321 * 119.83807 * 359.97438 * 6 5 4 9 9 N 1.40050 * 120.09464 * 179.97438 * 8 6 5 10 10 C 1.34773 * 119.99827 * 205.08767 * 9 8 6 11 11 O 1.21615 * 120.00272 * 5.56283 * 10 9 8 12 12 C 1.47514 * 119.99832 * 185.55962 * 10 9 8 13 13 C 1.39670 * 120.19766 * 0.02562 * 12 10 9 14 14 C 1.37824 * 119.92048 * 180.02562 * 13 12 10 15 15 C 1.38573 * 120.32045 * 359.97438 * 14 13 12 16 16 C 1.38031 * 120.40573 * 359.97438 * 15 14 13 17 17 C 1.38830 * 120.07355 * 0.02809 * 16 15 14 18 18 O 1.35519 * 120.16143 * 179.97438 * 17 16 15 19 19 C 1.34815 * 117.00162 * 354.84761 * 18 17 16 20 20 H 1.08003 * 119.99560 * 5.01283 * 19 18 17 21 21 C 1.38689 * 120.00002 * 185.01832 * 19 18 17 22 22 N 1.31520 * 120.00456 * 359.97438 * 21 19 18 23 23 Si 1.86810 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47191 * 59.99630 * 23 21 19 25 25 H 1.48501 * 109.47003 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46619 * 299.99650 * 23 21 19 27 27 C 1.38199 * 119.91824 * 270.23718 * 3 2 1 28 28 H 1.09005 * 109.47280 * 299.99416 * 1 2 3 29 29 H 1.09001 * 109.47462 * 60.00078 * 1 2 3 30 30 H 1.09001 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47280 * 240.00584 * 2 1 3 32 32 H 1.08992 * 109.47522 * 120.00164 * 2 1 3 33 33 H 1.07995 * 119.90919 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.98501 * 179.97438 * 5 4 3 35 35 H 0.96703 * 113.99945 * 270.02421 * 7 6 5 36 36 H 0.96997 * 120.00082 * 25.08181 * 9 8 6 37 37 H 1.08004 * 120.03908 * 359.97438 * 13 12 10 38 38 H 1.07997 * 119.83941 * 179.97438 * 14 13 12 39 39 H 1.08000 * 119.79886 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.96126 * 179.75324 * 16 15 14 41 41 H 0.97000 * 120.00604 * 180.02562 * 22 21 19 42 42 H 1.08005 * 120.00880 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0711 1.1986 5 6 2.7224 3.3747 1.2049 6 6 2.9553 4.0333 0.0086 7 8 3.4075 5.3157 0.0133 8 6 2.7250 3.3786 -1.1994 9 7 2.9581 4.0395 -2.4120 10 6 2.2996 3.6586 -3.5244 11 8 1.4305 2.8106 -3.4564 12 6 2.6329 4.2703 -4.8247 13 6 3.6306 5.2443 -4.9077 14 6 3.9370 5.8124 -6.1254 15 6 3.2601 5.4219 -7.2698 16 6 2.2726 4.4599 -7.2033 17 6 1.9504 3.8766 -5.9853 18 8 0.9807 2.9323 -5.9178 19 6 0.2927 2.6796 -7.0493 20 1 0.5777 3.1606 -7.9734 21 6 -0.7809 1.8019 -7.0267 22 7 -1.1277 1.2158 -5.9015 23 14 -1.7338 1.4511 -8.5947 24 1 -0.8188 0.8724 -9.6111 25 1 -2.8251 0.4865 -8.3054 26 1 -2.3147 2.7153 -9.1142 27 6 2.2573 2.0723 -1.1978 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.0815 1.5591 2.1322 34 1 2.9005 3.8797 2.1428 35 1 2.7052 5.9804 0.0146 36 1 3.5935 4.7714 -2.4511 37 1 4.1608 5.5523 -4.0186 38 1 4.7084 6.5657 -6.1881 39 1 3.5074 5.8724 -8.2197 40 1 1.7468 4.1637 -8.0990 41 1 -1.8784 0.6018 -5.8857 42 1 2.0737 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174080851.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:40 Heat of formation + Delta-G solvation = -74.153293 kcal Electronic energy + Delta-G solvation = -27314.272943 eV Core-core repulsion = 23417.389939 eV Total energy + Delta-G solvation = -3896.883005 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90627 -40.82661 -39.56912 -38.12914 -37.98849 -35.89195 -34.35731 -34.06039 -32.49800 -30.69312 -30.51104 -29.31460 -27.40842 -25.30686 -24.75989 -23.81361 -23.03763 -21.94119 -21.41081 -19.93610 -19.70675 -19.06123 -17.99627 -17.86645 -16.83646 -16.62895 -16.36258 -16.15593 -16.09000 -15.81481 -15.46436 -15.31130 -15.28639 -14.68482 -14.64950 -14.35573 -14.33095 -14.21222 -13.57582 -13.34245 -13.24525 -13.04905 -12.78892 -12.70185 -12.53443 -12.40627 -12.17597 -12.01532 -11.89685 -11.80933 -11.46590 -11.32913 -10.84712 -10.55526 -9.92592 -9.58475 -9.13084 -8.91061 -8.47008 -6.18192 -0.08122 0.26859 0.42793 0.68404 1.31202 1.43860 1.48833 1.95961 2.02588 2.13939 2.66026 2.85097 3.17620 3.27531 3.39840 3.69233 3.90746 3.95364 4.01634 4.19150 4.24666 4.37510 4.45877 4.47262 4.48600 4.54707 4.63014 4.70248 4.90902 4.96227 5.02919 5.04388 5.07712 5.08858 5.24416 5.31312 5.32566 5.43906 5.48799 5.56480 5.65231 5.71925 5.92614 5.95781 6.11516 6.49078 6.77923 6.91886 7.26927 7.75108 8.72615 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.004417 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.822208 B = 6337.549374 C = 8783.908097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.077 4.077 4 C -0.120 4.120 5 C -0.114 4.114 6 C 0.064 3.936 7 O -0.495 6.495 8 C 0.117 3.883 9 N -0.656 5.656 10 C 0.545 3.455 11 O -0.537 6.537 12 C -0.248 4.248 13 C -0.030 4.030 14 C -0.199 4.199 15 C -0.036 4.036 16 C -0.256 4.256 17 C 0.153 3.847 18 O -0.186 6.186 19 C -0.429 4.429 20 H 0.108 0.892 21 C -0.019 4.019 22 N -0.902 5.902 23 Si 1.021 2.979 24 H -0.254 1.254 25 H -0.273 1.273 26 H -0.254 1.254 27 C -0.148 4.148 28 H 0.071 0.929 29 H 0.019 0.981 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.106 0.894 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.404 0.596 36 H 0.422 0.578 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.271 0.729 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.500 7.570 10.782 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 C -0.078 4.078 4 C -0.139 4.139 5 C -0.133 4.133 6 C 0.017 3.983 7 O -0.306 6.306 8 C 0.022 3.978 9 N -0.303 5.303 10 C 0.337 3.663 11 O -0.414 6.414 12 C -0.253 4.253 13 C -0.049 4.049 14 C -0.217 4.217 15 C -0.054 4.054 16 C -0.275 4.275 17 C 0.097 3.903 18 O -0.088 6.088 19 C -0.505 4.505 20 H 0.125 0.875 21 C -0.219 4.219 22 N -0.537 5.537 23 Si 0.839 3.161 24 H -0.178 1.178 25 H -0.198 1.198 26 H -0.178 1.178 27 C -0.169 4.169 28 H 0.090 0.910 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.262 0.738 36 H 0.262 0.738 37 H 0.173 0.827 38 H 0.183 0.817 39 H 0.174 0.826 40 H 0.144 0.856 41 H 0.080 0.920 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.191 6.423 11.016 15.718 hybrid contribution -0.990 0.057 -1.155 1.522 sum 8.201 6.479 9.861 14.369 Atomic orbital electron populations 1.21708 0.94820 1.02294 1.01222 1.20562 0.96149 0.91827 1.03317 1.20058 0.98155 0.97210 0.92358 1.21192 1.00241 0.94716 0.97710 1.21499 0.98778 0.95497 0.97483 1.18095 1.03524 0.86474 0.90247 1.84763 1.36934 1.12736 1.96196 1.18418 1.01213 0.92414 0.85792 1.43190 1.44037 1.37032 1.06085 1.18713 0.80742 0.82141 0.84662 1.90918 1.31604 1.32770 1.86068 1.19126 1.07495 1.08454 0.90202 1.21287 0.92305 0.91366 0.99920 1.21175 1.04396 1.04784 0.91388 1.21473 0.91315 0.92329 1.00257 1.21319 1.05119 1.04401 0.96686 1.20019 0.88459 0.87566 0.94213 1.84165 1.41201 1.47130 1.36300 1.22004 1.12441 1.28647 0.87394 0.87501 1.26737 0.97203 0.95177 1.02783 1.70307 1.27209 1.27486 1.28710 0.84644 0.77361 0.79081 0.75029 1.17797 1.19808 1.17794 1.21192 1.02633 0.93760 0.99318 0.91009 0.96128 0.90951 0.92942 0.87596 0.82189 0.81778 0.73813 0.73836 0.82678 0.81722 0.82574 0.85613 0.92003 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.06 9.89 71.98 0.71 -3.34 16 2 C -0.08 -2.23 6.06 29.85 0.18 -2.05 16 3 C -0.08 -2.37 5.13 -19.86 -0.10 -2.48 16 4 C -0.12 -2.77 9.69 22.28 0.22 -2.55 16 5 C -0.11 -2.51 9.98 22.34 0.22 -2.29 16 6 C 0.06 1.70 6.72 22.60 0.15 1.86 16 7 O -0.49 -10.30 12.92 -93.27 -1.21 -11.50 16 8 C 0.12 4.12 6.45 38.21 0.25 4.36 16 9 N -0.66 -23.22 5.23 -305.99 -1.60 -24.81 16 10 C 0.55 25.40 7.57 86.69 0.66 26.05 16 11 O -0.54 -31.42 12.33 16.82 0.21 -31.21 16 12 C -0.25 -10.88 5.89 -19.99 -0.12 -10.99 16 13 C -0.03 -0.94 9.53 22.52 0.21 -0.72 16 14 C -0.20 -5.32 10.02 22.25 0.22 -5.10 16 15 C -0.04 -1.09 10.03 22.30 0.22 -0.87 16 16 C -0.26 -10.82 9.16 22.36 0.20 -10.61 16 17 C 0.15 7.85 6.66 22.91 0.15 8.00 16 18 O -0.19 -11.73 7.84 0.84 0.01 -11.72 16 19 C -0.43 -25.74 9.49 67.93 0.64 -25.09 16 20 H 0.11 5.72 5.20 -2.91 -0.02 5.71 16 21 C -0.02 -1.13 5.49 84.85 0.47 -0.67 16 22 N -0.90 -58.48 13.67 21.62 0.30 -58.19 16 23 Si 1.02 43.84 29.55 68.60 2.03 45.87 16 24 H -0.25 -10.12 7.11 99.48 0.71 -9.42 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 27 C -0.15 -5.85 8.37 22.38 0.19 -5.66 16 28 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.63 8.09 -2.38 -0.02 1.61 16 32 H 0.11 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.40 5.22 9.06 -74.06 -0.67 4.55 16 36 H 0.42 11.51 6.40 -92.71 -0.59 10.92 16 37 H 0.16 3.40 6.42 -2.91 -0.02 3.38 16 38 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 39 H 0.16 3.46 8.06 -2.91 -0.02 3.43 16 40 H 0.13 5.36 5.63 -2.91 -0.02 5.34 16 41 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 42 H 0.10 5.18 5.78 -2.91 -0.02 5.17 16 Total: -1.00 -87.84 358.63 4.04 -83.80 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -0.17 Total: 39.92 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 4.48 Total: -32.15 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -1.30 Total: -83.00 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -0.99 Total: -54.44 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -87.84 4.04 -83.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174080851.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.646 kcal (2) G-P(sol) polarization free energy of solvation -87.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds