Wall clock time and date at job start Tue Mar 31 2020 14:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33274 * 126.17696 * 2 1 4 4 C 1.31657 * 108.97131 * 179.97438 * 3 2 1 5 5 C 1.47701 * 125.53581 * 179.97438 * 4 3 2 6 6 C 1.39647 * 120.14872 * 359.72190 * 5 4 3 7 7 C 1.37938 * 119.84440 * 179.72072 * 6 5 4 8 8 C 1.38372 * 120.15071 * 0.53710 * 7 6 5 9 9 C 1.38373 * 120.30618 * 359.76275 * 8 7 6 10 10 C 1.37938 * 120.14922 * 359.95738 * 9 8 7 11 11 O 1.34196 * 108.93534 * 359.97438 * 4 3 2 12 12 C 1.35431 * 107.59077 * 359.97438 * 11 4 3 13 13 C 1.46385 * 126.57151 * 180.02562 * 12 11 4 14 14 O 1.21633 * 120.00163 * 177.95850 * 13 12 11 15 15 O 1.34913 * 119.99659 * 357.96380 * 13 12 11 16 16 C 1.42907 * 116.99726 * 185.53616 * 15 13 12 17 17 C 1.52998 * 109.46956 * 179.26930 * 16 15 13 18 18 C 1.50711 * 115.55042 * 305.74572 * 17 16 15 19 19 H 1.07999 * 119.99855 * 144.66542 * 18 17 16 20 20 C 1.37874 * 119.99784 * 324.66842 * 18 17 16 21 21 N 1.31512 * 120.00350 * 346.35614 * 20 18 17 22 22 Si 1.86801 * 119.99916 * 166.35338 * 20 18 17 23 23 H 1.48498 * 109.47054 * 89.99967 * 22 20 18 24 24 H 1.48501 * 109.47399 * 210.00177 * 22 20 18 25 25 H 1.48504 * 109.46836 * 329.99975 * 22 20 18 26 26 C 1.52994 * 117.50167 * 160.07751 * 17 16 15 27 27 C 1.52995 * 117.50136 * 91.41538 * 17 16 15 28 28 H 1.08993 * 109.47334 * 90.03159 * 1 2 3 29 29 H 1.09008 * 109.46862 * 210.02782 * 1 2 3 30 30 H 1.09003 * 109.47347 * 330.02228 * 1 2 3 31 31 H 1.08004 * 120.07627 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.92516 * 180.25680 * 7 6 5 33 33 H 1.08002 * 119.84221 * 179.73922 * 8 7 6 34 34 H 1.07998 * 119.91965 * 179.97438 * 9 8 7 35 35 H 1.08006 * 120.07398 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.47446 * 299.27064 * 16 15 13 37 37 H 1.09002 * 109.46568 * 59.27068 * 16 15 13 38 38 H 0.96999 * 120.00144 * 185.08342 * 21 20 18 39 39 H 1.09007 * 117.49558 * 0.02562 * 26 17 16 40 40 H 1.08998 * 117.50114 * 145.01698 * 26 17 16 41 41 H 1.08998 * 117.50258 * 214.98050 * 27 17 16 42 42 H 1.09000 * 117.49972 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2937 1.0758 0.0000 4 6 3.5513 0.6863 0.0006 5 6 4.7269 1.5805 0.0002 6 6 4.5541 2.9663 -0.0067 7 6 5.6563 3.7955 -0.0011 8 6 6.9310 3.2572 0.0000 9 6 7.1096 1.8851 0.0005 10 6 6.0161 1.0442 0.0008 11 8 3.5918 -0.6550 0.0015 12 6 2.3138 -1.1031 0.0021 13 6 1.8797 -2.5011 0.0037 14 8 0.6940 -2.7697 0.0416 15 8 2.7948 -3.4916 -0.0368 16 6 2.3004 -4.8271 -0.1554 17 6 3.4769 -5.8040 -0.2037 18 6 4.5118 -5.5235 -1.2628 19 1 5.5550 -5.7198 -1.0638 20 6 4.1267 -5.0161 -2.4856 21 7 2.8580 -5.0267 -2.8319 22 14 5.4070 -4.3136 -3.6504 23 1 5.9145 -5.3917 -4.5366 24 1 4.7913 -3.2433 -4.4755 25 1 6.5329 -3.7473 -2.8650 26 6 3.1936 -7.2685 0.1367 27 6 3.9648 -6.3883 1.1235 28 1 -0.3633 -0.0006 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5135 31 1 3.5596 3.3877 -0.0113 32 1 5.5241 4.8674 -0.0022 33 1 7.7906 3.9112 0.0001 34 1 8.1073 1.4717 0.0010 35 1 6.1569 -0.0267 0.0016 36 1 1.6705 -5.0591 0.7033 37 1 1.7150 -4.9178 -1.0705 38 1 2.5953 -4.7383 -3.7200 39 1 2.1689 -7.5360 0.3946 40 1 3.7559 -8.0290 -0.4050 41 1 5.0342 -6.5702 1.2305 42 1 3.4479 -6.0765 2.0310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181761554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:57 Heat of formation + Delta-G solvation = -7.032713 kcal Electronic energy + Delta-G solvation = -27215.575834 eV Core-core repulsion = 23321.603396 eV Total energy + Delta-G solvation = -3893.972438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.34077 -39.67480 -39.20492 -36.92009 -35.61840 -34.97035 -32.87777 -32.20247 -31.24558 -30.37129 -28.27074 -26.49201 -25.42811 -24.48307 -23.00218 -21.92558 -21.33690 -21.23943 -20.33532 -19.26380 -17.95852 -17.41749 -16.97217 -16.78396 -16.09166 -15.65939 -15.39223 -15.31423 -14.66666 -14.59626 -14.00833 -13.86982 -13.69340 -13.31987 -13.20731 -13.09265 -13.00615 -12.29800 -12.22896 -12.12126 -11.71668 -11.68235 -11.38824 -11.14293 -10.99356 -10.90436 -10.84431 -10.54262 -10.39617 -10.22513 -9.78249 -9.61939 -9.50492 -9.23945 -9.18321 -8.80926 -8.35565 -8.14545 -6.11221 -4.12484 0.26783 1.13008 1.27715 2.31361 2.48999 3.13929 3.23853 3.32482 3.36545 3.36639 3.58275 3.75886 4.33199 4.59350 4.67693 4.71975 4.81187 4.89210 5.03744 5.14197 5.21441 5.40936 5.53012 5.55539 5.63829 5.70092 5.75498 5.83197 5.86776 5.97590 6.12397 6.14655 6.16106 6.21150 6.32544 6.38739 6.54797 6.60875 6.61355 6.69795 6.90304 7.19966 7.28676 7.32028 7.51630 7.84712 8.26886 8.39086 8.81417 9.46833 10.91636 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.004126 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.703465 B = 6785.392663 C = 8060.354829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.083 3.917 3 N -0.477 5.477 4 C 0.257 3.743 5 C -0.024 4.024 6 C -0.067 4.067 7 C -0.126 4.126 8 C -0.099 4.099 9 C -0.121 4.121 10 C -0.081 4.081 11 O -0.161 6.161 12 C -0.077 4.077 13 C 0.548 3.452 14 O -0.494 6.494 15 O -0.306 6.306 16 C 0.110 3.890 17 C 0.048 3.952 18 C -0.484 4.484 19 H 0.063 0.937 20 C 0.076 3.924 21 N -0.883 5.883 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.270 1.270 26 C -0.190 4.190 27 C -0.209 4.209 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.031 0.969 37 H 0.114 0.886 38 H 0.263 0.737 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 15.648 5.749 16.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.042 4.042 3 N -0.207 5.207 4 C 0.056 3.944 5 C -0.025 4.025 6 C -0.086 4.086 7 C -0.144 4.144 8 C -0.117 4.117 9 C -0.139 4.139 10 C -0.101 4.101 11 O -0.046 6.046 12 C -0.130 4.130 13 C 0.392 3.608 14 O -0.385 6.385 15 O -0.219 6.219 16 C 0.036 3.964 17 C 0.048 3.952 18 C -0.521 4.521 19 H 0.081 0.919 20 C -0.127 4.127 21 N -0.520 5.520 22 Si 0.718 3.282 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.195 1.195 26 C -0.228 4.228 27 C -0.246 4.246 28 H 0.102 0.898 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.049 0.951 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.098 0.902 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.190 16.195 5.635 17.286 hybrid contribution 0.830 -0.610 -0.710 1.251 sum 3.020 15.585 4.925 16.621 Atomic orbital electron populations 1.20424 0.84865 1.04459 1.03992 1.22024 0.98373 0.85941 0.97899 1.70472 0.99635 1.30616 1.19980 1.23960 0.93285 0.79030 0.98168 1.17334 0.87788 0.90954 1.06468 1.21212 1.00275 0.90880 0.96227 1.21102 0.92068 1.00047 1.01183 1.21408 0.97476 0.95315 0.97527 1.21124 0.98902 0.93385 1.00524 1.21450 0.90972 1.01306 0.96353 1.84671 1.29389 1.22259 1.68260 1.22019 0.81120 0.94115 1.15794 1.18882 0.84377 0.83509 0.74053 1.90849 1.17184 1.83035 1.47475 1.86233 1.37724 1.17387 1.80541 1.22586 0.96788 0.75435 1.01544 1.18850 0.94754 0.88867 0.92760 1.20405 0.92264 1.42345 0.97062 0.91865 1.24912 0.95280 0.94576 0.97929 1.69784 1.15529 1.46923 1.19765 0.86594 0.81831 0.79192 0.80575 1.20536 1.21054 1.19493 1.22966 0.98655 0.96895 1.04254 1.22971 0.99087 1.08373 0.94187 0.89762 0.88432 0.90321 0.84284 0.85057 0.85431 0.84961 0.84435 0.95089 0.86858 0.92634 0.91389 0.89692 0.90239 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 9.89 36.00 0.36 -0.76 16 2 C 0.08 1.44 7.15 -82.54 -0.59 0.85 16 3 N -0.48 -7.91 10.86 -7.68 -0.08 -8.00 16 4 C 0.26 4.27 7.88 -13.76 -0.11 4.16 16 5 C -0.02 -0.33 5.87 -104.98 -0.62 -0.94 16 6 C -0.07 -0.73 9.69 -39.17 -0.38 -1.11 16 7 C -0.13 -1.08 10.03 -39.64 -0.40 -1.47 16 8 C -0.10 -0.81 10.04 -39.48 -0.40 -1.20 16 9 C -0.12 -1.16 10.03 -39.64 -0.40 -1.56 16 10 C -0.08 -1.00 9.71 -39.17 -0.38 -1.38 16 11 O -0.16 -3.10 10.53 2.75 0.03 -3.07 16 12 C -0.08 -1.52 7.24 -36.87 -0.27 -1.79 16 13 C 0.55 12.11 7.90 34.01 0.27 12.38 16 14 O -0.49 -10.90 14.53 -19.37 -0.28 -11.18 16 15 O -0.31 -7.49 9.79 -42.13 -0.41 -7.90 16 16 C 0.11 2.69 4.50 37.16 0.17 2.86 16 17 C 0.05 1.20 2.10 -155.66 -0.33 0.87 16 18 C -0.48 -13.15 8.76 -34.44 -0.30 -13.45 16 19 H 0.06 1.71 7.85 -52.49 -0.41 1.29 16 20 C 0.08 2.07 5.15 -17.82 -0.09 1.98 16 21 N -0.88 -24.57 10.90 55.43 0.60 -23.97 16 22 Si 0.89 21.22 29.56 -169.99 -5.03 16.20 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 C -0.19 -4.21 9.96 -26.70 -0.27 -4.47 16 27 C -0.21 -4.52 9.92 -26.70 -0.26 -4.78 16 28 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.10 1.42 6.41 -51.92 -0.33 1.09 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.14 1.44 7.83 -52.48 -0.41 1.03 16 32 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.14 1.76 7.89 -52.48 -0.41 1.35 16 36 H 0.03 0.70 8.04 -51.93 -0.42 0.29 16 37 H 0.11 3.05 6.06 -51.93 -0.31 2.73 16 38 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 41 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 368.75 15.07 5.56 5.56 Total: -1.00 -30.38 368.75 -8.85 -39.23 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.24 Total: 2.95 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -3.99 Total: -9.82 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: 0.52 Total: -31.96 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.66 Total: -22.15 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.38 -8.85 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181761554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.194 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds