Wall clock time and date at job start Tue Mar 31 2020 14:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33274 * 126.17696 * 2 1 4 4 C 1.31657 * 108.97131 * 179.97438 * 3 2 1 5 5 C 1.47701 * 125.53581 * 179.97438 * 4 3 2 6 6 C 1.39647 * 120.14872 * 359.72190 * 5 4 3 7 7 C 1.37938 * 119.84440 * 179.72072 * 6 5 4 8 8 C 1.38372 * 120.15071 * 0.53710 * 7 6 5 9 9 C 1.38373 * 120.30618 * 359.76275 * 8 7 6 10 10 C 1.37938 * 120.14922 * 359.95738 * 9 8 7 11 11 O 1.34196 * 108.93534 * 359.97438 * 4 3 2 12 12 C 1.35431 * 107.59077 * 359.97438 * 11 4 3 13 13 C 1.46385 * 126.57151 * 180.02562 * 12 11 4 14 14 O 1.21633 * 120.00163 * 177.95850 * 13 12 11 15 15 O 1.34913 * 119.99659 * 357.96380 * 13 12 11 16 16 C 1.42907 * 116.99726 * 185.53616 * 15 13 12 17 17 C 1.52998 * 109.46956 * 179.26930 * 16 15 13 18 18 C 1.50711 * 115.55042 * 305.74572 * 17 16 15 19 19 H 1.07999 * 119.99855 * 144.66542 * 18 17 16 20 20 C 1.37874 * 119.99784 * 324.66842 * 18 17 16 21 21 N 1.31512 * 120.00350 * 346.35614 * 20 18 17 22 22 Si 1.86801 * 119.99916 * 166.35338 * 20 18 17 23 23 H 1.48498 * 109.47054 * 89.99967 * 22 20 18 24 24 H 1.48501 * 109.47399 * 210.00177 * 22 20 18 25 25 H 1.48504 * 109.46836 * 329.99975 * 22 20 18 26 26 C 1.52994 * 117.50167 * 160.07751 * 17 16 15 27 27 C 1.52995 * 117.50136 * 91.41538 * 17 16 15 28 28 H 1.08993 * 109.47334 * 90.03159 * 1 2 3 29 29 H 1.09008 * 109.46862 * 210.02782 * 1 2 3 30 30 H 1.09003 * 109.47347 * 330.02228 * 1 2 3 31 31 H 1.08004 * 120.07627 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.92516 * 180.25680 * 7 6 5 33 33 H 1.08002 * 119.84221 * 179.73922 * 8 7 6 34 34 H 1.07998 * 119.91965 * 179.97438 * 9 8 7 35 35 H 1.08006 * 120.07398 * 180.02562 * 10 9 8 36 36 H 1.08997 * 109.47446 * 299.27064 * 16 15 13 37 37 H 1.09002 * 109.46568 * 59.27068 * 16 15 13 38 38 H 0.96999 * 120.00144 * 185.08342 * 21 20 18 39 39 H 1.09007 * 117.49558 * 0.02562 * 26 17 16 40 40 H 1.08998 * 117.50114 * 145.01698 * 26 17 16 41 41 H 1.08998 * 117.50258 * 214.98050 * 27 17 16 42 42 H 1.09000 * 117.49972 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2937 1.0758 0.0000 4 6 3.5513 0.6863 0.0006 5 6 4.7269 1.5805 0.0002 6 6 4.5541 2.9663 -0.0067 7 6 5.6563 3.7955 -0.0011 8 6 6.9310 3.2572 0.0000 9 6 7.1096 1.8851 0.0005 10 6 6.0161 1.0442 0.0008 11 8 3.5918 -0.6550 0.0015 12 6 2.3138 -1.1031 0.0021 13 6 1.8797 -2.5011 0.0037 14 8 0.6940 -2.7697 0.0416 15 8 2.7948 -3.4916 -0.0368 16 6 2.3004 -4.8271 -0.1554 17 6 3.4769 -5.8040 -0.2037 18 6 4.5118 -5.5235 -1.2628 19 1 5.5550 -5.7198 -1.0638 20 6 4.1267 -5.0161 -2.4856 21 7 2.8580 -5.0267 -2.8319 22 14 5.4070 -4.3136 -3.6504 23 1 5.9145 -5.3917 -4.5366 24 1 4.7913 -3.2433 -4.4755 25 1 6.5329 -3.7473 -2.8650 26 6 3.1936 -7.2685 0.1367 27 6 3.9648 -6.3883 1.1235 28 1 -0.3633 -0.0006 -1.0276 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5135 31 1 3.5596 3.3877 -0.0113 32 1 5.5241 4.8674 -0.0022 33 1 7.7906 3.9112 0.0001 34 1 8.1073 1.4717 0.0010 35 1 6.1569 -0.0267 0.0016 36 1 1.6705 -5.0591 0.7033 37 1 1.7150 -4.9178 -1.0705 38 1 2.5953 -4.7383 -3.7200 39 1 2.1689 -7.5360 0.3946 40 1 3.7559 -8.0290 -0.4050 41 1 5.0342 -6.5702 1.2305 42 1 3.4479 -6.0765 2.0310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181761554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:57 Heat of formation + Delta-G solvation = -23.614417 kcal Electronic energy + Delta-G solvation = -27216.294871 eV Core-core repulsion = 23321.603396 eV Total energy + Delta-G solvation = -3894.691475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.69945 -41.39771 -40.04320 -38.71959 -37.26666 -36.47516 -34.24296 -33.96939 -32.04194 -31.43726 -29.72771 -28.19273 -27.39661 -25.69983 -23.94597 -23.30365 -22.94660 -22.42975 -21.73079 -21.19389 -19.45477 -18.72863 -18.52244 -18.38257 -17.49281 -17.22194 -16.89905 -16.53692 -16.36395 -15.75885 -15.54330 -15.04040 -14.91714 -14.48039 -14.45614 -14.29155 -14.07445 -14.02786 -13.89558 -13.62849 -13.38208 -12.90997 -12.86713 -12.49437 -12.43102 -12.40414 -12.35669 -12.17244 -12.04297 -11.87144 -11.51864 -11.35506 -11.16277 -10.83631 -10.69902 -10.10074 -10.02653 -9.50225 -8.15768 -6.22276 -0.94813 0.11456 0.35255 0.94287 1.25945 1.32267 1.36725 1.45410 1.56392 1.84050 2.34837 2.49224 2.75396 2.95839 3.35289 3.46353 3.65307 3.87300 3.94249 4.01512 4.14139 4.17164 4.24401 4.32856 4.39845 4.47023 4.51980 4.58871 4.59835 4.69679 4.72415 4.82755 4.86820 4.90250 5.02944 5.09610 5.14719 5.32091 5.33227 5.40560 5.45813 5.47180 5.53134 5.76068 5.87703 6.16469 6.28055 6.60381 6.76542 7.38436 8.85317 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011127 B = 0.004126 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.703465 B = 6785.392663 C = 8060.354829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.106 3.894 3 N -0.485 5.485 4 C 0.273 3.727 5 C -0.062 4.062 6 C -0.067 4.067 7 C -0.119 4.119 8 C -0.081 4.081 9 C -0.123 4.123 10 C -0.099 4.099 11 O -0.185 6.185 12 C -0.128 4.128 13 C 0.546 3.454 14 O -0.504 6.504 15 O -0.327 6.327 16 C 0.119 3.881 17 C 0.006 3.994 18 C -0.500 4.500 19 H 0.056 0.944 20 C 0.035 3.965 21 N -0.905 5.905 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.289 1.289 25 H -0.267 1.267 26 C -0.179 4.179 27 C -0.188 4.188 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.119 0.881 36 H 0.043 0.957 37 H 0.085 0.915 38 H 0.261 0.739 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.245 18.412 6.255 19.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.020 4.020 3 N -0.215 5.215 4 C 0.072 3.928 5 C -0.063 4.063 6 C -0.086 4.086 7 C -0.136 4.136 8 C -0.099 4.099 9 C -0.141 4.141 10 C -0.118 4.118 11 O -0.072 6.072 12 C -0.181 4.181 13 C 0.391 3.609 14 O -0.396 6.396 15 O -0.241 6.241 16 C 0.046 3.954 17 C 0.006 3.994 18 C -0.537 4.537 19 H 0.074 0.926 20 C -0.166 4.166 21 N -0.543 5.543 22 Si 0.766 3.234 23 H -0.193 1.193 24 H -0.215 1.215 25 H -0.192 1.192 26 C -0.217 4.217 27 C -0.225 4.225 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.160 0.840 32 H 0.185 0.815 33 H 0.185 0.815 34 H 0.172 0.828 35 H 0.137 0.863 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.653 18.951 6.151 20.257 hybrid contribution 0.500 -1.270 -0.818 1.591 sum 4.153 17.682 5.333 18.930 Atomic orbital electron populations 1.20570 0.82575 1.05510 1.04958 1.22590 0.99688 0.85211 0.94521 1.70566 0.99555 1.29890 1.21440 1.24887 0.94513 0.78425 0.94967 1.17594 0.87037 0.91680 1.09997 1.21400 1.01610 0.89816 0.95818 1.21544 0.91285 1.01525 0.99268 1.21909 0.98718 0.94965 0.94333 1.21439 0.98896 0.94070 0.99695 1.21481 0.91701 1.01038 0.97605 1.84638 1.29488 1.23674 1.69363 1.21784 0.81989 0.93529 1.20760 1.19160 0.84179 0.84025 0.73502 1.90810 1.17186 1.83468 1.48181 1.86221 1.38867 1.17746 1.81272 1.22338 0.96588 0.75923 1.00549 1.18997 0.95357 0.90576 0.94488 1.20654 0.92521 1.42595 0.97955 0.92550 1.25524 0.96794 0.94926 0.99346 1.69915 1.16768 1.47804 1.19833 0.85812 0.79953 0.78638 0.79034 1.19279 1.21504 1.19170 1.22962 0.99733 0.95174 1.03787 1.22994 0.99631 1.06303 0.93552 0.88594 0.89233 0.87303 0.83954 0.81481 0.81532 0.82792 0.86313 0.93888 0.89715 0.92972 0.89714 0.89839 0.89671 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.16 9.89 71.24 0.70 -1.46 16 2 C 0.11 3.70 7.15 41.97 0.30 4.00 16 3 N -0.48 -16.12 10.86 -292.18 -3.17 -19.29 16 4 C 0.27 9.31 7.88 87.22 0.69 10.00 16 5 C -0.06 -1.65 5.87 -20.10 -0.12 -1.77 16 6 C -0.07 -1.35 9.69 22.54 0.22 -1.13 16 7 C -0.12 -1.55 10.03 22.23 0.22 -1.32 16 8 C -0.08 -0.97 10.04 22.33 0.22 -0.74 16 9 C -0.12 -2.05 10.03 22.23 0.22 -1.83 16 10 C -0.10 -2.42 9.71 22.54 0.22 -2.20 16 11 O -0.18 -7.55 10.53 -12.96 -0.14 -7.68 16 12 C -0.13 -5.33 7.24 24.02 0.17 -5.15 16 13 C 0.55 25.38 7.90 69.94 0.55 25.94 16 14 O -0.50 -23.21 14.53 19.40 0.28 -22.93 16 15 O -0.33 -16.80 9.79 -57.27 -0.56 -17.36 16 16 C 0.12 6.07 4.50 71.98 0.32 6.40 16 17 C 0.01 0.32 2.10 -52.93 -0.11 0.21 16 18 C -0.50 -27.79 8.76 25.60 0.22 -27.57 16 19 H 0.06 3.11 7.85 -2.91 -0.02 3.08 16 20 C 0.03 1.92 5.15 84.65 0.44 2.36 16 21 N -0.91 -52.09 10.90 21.45 0.23 -51.85 16 22 Si 0.94 44.41 29.56 68.60 2.03 46.44 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 C -0.18 -7.84 9.96 30.62 0.30 -7.53 16 27 C -0.19 -7.97 9.92 30.62 0.30 -7.67 16 28 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.09 2.62 6.41 -2.38 -0.02 2.61 16 30 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.14 2.69 7.83 -2.91 -0.02 2.66 16 32 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 33 H 0.17 0.78 8.06 -2.91 -0.02 0.75 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.12 3.26 7.89 -2.91 -0.02 3.23 16 36 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 37 H 0.08 4.77 6.06 -2.39 -0.01 4.76 16 38 H 0.26 14.49 8.32 -92.71 -0.77 13.72 16 39 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 40 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 Total: -1.00 -68.63 368.75 4.61 -64.02 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.05 Total: 18.14 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 4.89 Total: -9.49 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: -2.94 Total: -71.14 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.41 Total: -47.97 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -68.63 4.61 -64.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181761554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.404 kcal (2) G-P(sol) polarization free energy of solvation -68.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds