Wall clock time and date at job start Tue Mar 31 2020 15:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99893 * 2 1 4 4 C 1.50697 * 109.46948 * 66.04834 * 3 2 1 5 5 H 1.07996 * 120.00630 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99680 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99931 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 120.00131 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46601 * 90.00086 * 8 6 4 10 10 H 1.48496 * 109.47116 * 210.00032 * 8 6 4 11 11 H 1.48504 * 109.47035 * 330.00347 * 8 6 4 12 12 C 1.46900 * 110.99950 * 236.04760 * 2 1 3 13 13 C 1.53008 * 109.46665 * 286.60509 * 12 2 1 14 14 C 1.52997 * 109.47281 * 304.82827 * 13 12 2 15 15 O 1.42901 * 109.47325 * 64.83305 * 13 12 2 16 16 C 1.50699 * 109.46650 * 184.83274 * 13 12 2 17 17 C 1.38239 * 120.00314 * 29.72547 * 16 13 12 18 18 C 1.38241 * 119.99938 * 180.37001 * 17 16 13 19 19 C 1.38236 * 120.00152 * 359.85886 * 18 17 16 20 20 S 1.76195 * 119.99885 * 180.02562 * 19 18 17 21 21 C 1.81407 * 104.44777 * 270.02296 * 20 19 18 22 22 O 1.42097 * 104.27665 * 26.09446 * 20 19 18 23 23 O 1.42101 * 104.27822 * 153.95466 * 20 19 18 24 24 C 1.38232 * 119.99791 * 0.09689 * 19 18 17 25 25 C 1.38234 * 120.00406 * 359.97438 * 24 19 18 26 26 H 1.08994 * 109.47560 * 192.15753 * 1 2 3 27 27 H 1.09000 * 109.47249 * 312.16361 * 1 2 3 28 28 H 1.09006 * 109.47433 * 72.15560 * 1 2 3 29 29 H 1.09005 * 109.46433 * 186.04374 * 3 2 1 30 30 H 1.08999 * 109.47133 * 306.04339 * 3 2 1 31 31 H 0.97006 * 119.99998 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47294 * 166.60739 * 12 2 1 33 33 H 1.08992 * 109.47464 * 46.60221 * 12 2 1 34 34 H 1.09001 * 109.47511 * 300.00582 * 14 13 12 35 35 H 1.09004 * 109.47045 * 60.00300 * 14 13 12 36 36 H 1.08993 * 109.47105 * 180.02562 * 14 13 12 37 37 H 0.96704 * 113.99821 * 59.99318 * 15 13 12 38 38 H 1.08000 * 119.99739 * 0.27462 * 17 16 13 39 39 H 1.07991 * 119.99632 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.46992 * 60.00267 * 21 20 19 41 41 H 1.09000 * 109.46706 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47162 * 300.00124 * 21 20 19 43 43 H 1.08005 * 119.99798 * 179.97438 * 24 19 18 44 44 H 1.08001 * 120.00005 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5115 2.0485 6 6 2.0277 3.3491 1.5289 7 7 1.7144 3.9389 2.6619 8 14 3.0020 4.2753 0.2319 9 1 2.0661 4.9798 -0.6808 10 1 3.8888 5.2662 0.8928 11 1 3.8255 3.3162 -0.5474 12 6 1.9954 -0.7660 -1.1376 13 6 1.7933 -2.2611 -0.8829 14 6 2.4336 -2.6420 0.4534 15 8 0.3949 -2.5525 -0.8413 16 6 2.4382 -3.0512 -1.9923 17 6 3.5449 -2.5452 -2.6483 18 6 4.1318 -3.2666 -3.6711 19 6 3.6140 -4.4953 -4.0359 20 16 4.3626 -5.4150 -5.3391 21 6 3.5013 -4.8613 -6.8366 22 8 5.7132 -4.9736 -5.3486 23 8 4.0356 -6.7666 -5.0468 24 6 2.5080 -5.0016 -3.3793 25 6 1.9201 -4.2797 -2.3576 26 1 -0.3634 -1.0045 0.2164 27 1 -0.3634 0.6898 0.7617 28 1 -0.3634 0.3149 -0.9783 29 1 3.0797 1.3443 -0.1082 30 1 1.5611 1.9273 -0.8309 31 1 1.9896 4.8549 2.8241 32 1 3.0589 -0.5579 -1.2548 33 1 1.4665 -0.4774 -2.0459 34 1 3.5002 -2.4197 0.4217 35 1 1.9671 -2.0705 1.2558 36 1 2.2900 -3.7071 0.6345 37 1 -0.0765 -2.3356 -1.6574 38 1 3.9499 -1.5856 -2.3628 39 1 4.9961 -2.8711 -4.1838 40 1 3.6441 -3.7880 -6.9619 41 1 3.9051 -5.3855 -7.7027 42 1 2.4371 -5.0780 -6.7448 43 1 2.1031 -5.9614 -3.6647 44 1 1.0557 -4.6752 -1.8449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182418005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:01 Heat of formation + Delta-G solvation = -76.004270 kcal Electronic energy + Delta-G solvation = -25978.231104 eV Core-core repulsion = 22216.711786 eV Total energy + Delta-G solvation = -3761.519318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27251 -37.97024 -37.43939 -36.27459 -35.64182 -32.90644 -32.33342 -31.30088 -30.10449 -29.64025 -27.97303 -26.79681 -24.42850 -23.50114 -22.75061 -20.63407 -20.06292 -19.34162 -18.25771 -17.28496 -16.79248 -16.54717 -16.32739 -15.68347 -15.33089 -14.97075 -14.90754 -14.31535 -14.12318 -13.90067 -13.77879 -13.67533 -13.65068 -13.26553 -12.96047 -12.70162 -12.41978 -12.35825 -12.31602 -12.13375 -11.98953 -11.70530 -11.53576 -11.52517 -11.28962 -11.06729 -10.82920 -10.80463 -10.71836 -10.62616 -9.90444 -9.65992 -9.42323 -9.29791 -9.20264 -8.62412 -7.44237 -6.09290 -4.06729 -0.31552 0.52330 1.04809 2.50878 3.12527 3.23262 3.31569 3.31927 3.59905 3.74375 4.12886 4.26298 4.32091 4.37188 4.40766 4.62101 4.65666 4.92878 5.00706 5.08202 5.17060 5.20833 5.22004 5.28818 5.42168 5.66194 5.72429 5.81978 5.86065 5.90213 5.99981 6.13738 6.15875 6.25457 6.32262 6.55828 6.64243 6.75796 6.82082 6.96937 7.53978 7.61608 7.83967 7.99150 8.60750 8.99924 9.52114 11.03812 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020735 B = 0.002740 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.024968 B =10215.816469 C =11040.452782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.520 5.520 3 C 0.160 3.840 4 C -0.508 4.508 5 H 0.082 0.918 6 C 0.068 3.932 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.028 3.972 13 C 0.172 3.828 14 C -0.123 4.123 15 O -0.542 6.542 16 C -0.051 4.051 17 C -0.133 4.133 18 C -0.024 4.024 19 C -0.665 4.665 20 S 2.502 3.498 21 C -0.650 4.650 22 O -0.939 6.939 23 O -0.940 6.940 24 C -0.026 4.026 25 C -0.125 4.125 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.003 0.997 29 H 0.026 0.974 30 H -0.018 1.018 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.028 0.972 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.370 0.630 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.131 0.869 43 H 0.140 0.860 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 -18.146 -19.142 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.243 5.243 3 C 0.034 3.966 4 C -0.547 4.547 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.101 4.101 13 C 0.131 3.869 14 C -0.180 4.180 15 O -0.347 6.347 16 C -0.052 4.052 17 C -0.152 4.152 18 C -0.043 4.043 19 C -0.752 4.752 20 S 2.682 3.318 21 C -0.800 4.800 22 O -0.936 6.936 23 O -0.937 6.937 24 C -0.045 4.045 25 C -0.144 4.144 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.021 0.979 29 H 0.044 0.956 30 H -0.001 1.001 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.217 0.783 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.158 0.842 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.240 -18.981 -17.912 26.194 hybrid contribution -0.482 1.984 -1.980 2.844 sum 1.758 -16.997 -19.891 26.223 Atomic orbital electron populations 1.22569 0.87675 1.02683 0.99390 1.61873 1.07994 1.15895 1.38530 1.20235 0.95009 0.84263 0.97082 1.21013 1.35554 0.97194 1.00896 0.90023 1.24906 0.95781 0.97373 0.95304 1.69892 1.46781 1.13267 1.23882 0.86866 0.80615 0.80069 0.82157 1.20421 1.21099 1.19311 1.22832 1.00916 0.93107 0.93239 1.20233 0.81063 0.92092 0.93496 1.21603 1.00093 1.01026 0.95294 1.86621 1.19331 1.87557 1.41189 1.21128 0.94588 0.94785 0.94718 1.21380 0.96442 1.00948 0.96447 1.20938 0.96824 0.91384 0.95169 1.30440 1.11641 1.10831 1.22320 1.05051 0.75334 0.74855 0.76532 1.30230 1.15447 1.13570 1.20779 1.93590 1.30999 1.82542 1.86466 1.93583 1.84964 1.31910 1.83250 1.20924 0.91853 0.98269 0.93482 1.21177 1.01185 0.94369 0.97688 0.90567 0.90485 0.97857 0.95595 1.00077 0.92631 0.90365 0.95368 0.91494 0.88900 0.93001 0.78281 0.84422 0.84107 0.84948 0.85095 0.84992 0.84204 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 8.90 60.06 0.53 0.99 16 2 N -0.52 -10.17 3.73 -244.37 -0.91 -11.09 16 3 C 0.16 3.75 3.78 -4.98 -0.02 3.73 16 4 C -0.51 -14.12 8.89 -34.44 -0.31 -14.42 16 5 H 0.08 2.48 7.45 -52.49 -0.39 2.09 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 8 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 12 C 0.03 0.43 3.76 -3.82 -0.01 0.42 16 13 C 0.17 2.24 0.98 -91.77 -0.09 2.15 16 14 C -0.12 -1.74 8.61 37.16 0.32 -1.42 16 15 O -0.54 -6.71 9.02 -35.23 -0.32 -7.03 16 16 C -0.05 -0.58 4.81 -104.62 -0.50 -1.08 16 17 C -0.13 -1.45 9.14 -39.58 -0.36 -1.82 16 18 C -0.02 -0.24 9.47 -39.58 -0.37 -0.61 16 19 C -0.67 -6.02 5.66 -39.58 -0.22 -6.24 16 20 S 2.50 18.91 5.80 -107.50 -0.62 18.28 16 21 C -0.65 -2.22 10.80 101.05 1.09 -1.13 16 22 O -0.94 -10.24 17.13 -57.54 -0.99 -11.23 16 23 O -0.94 -10.00 17.13 -57.54 -0.99 -10.98 16 24 C -0.03 -0.24 9.47 -39.59 -0.37 -0.62 16 25 C -0.13 -1.26 9.35 -39.58 -0.37 -1.63 16 26 H 0.08 1.27 5.81 -51.93 -0.30 0.97 16 27 H 0.08 1.64 6.62 -51.93 -0.34 1.29 16 28 H 0.00 0.05 7.93 -51.93 -0.41 -0.36 16 29 H 0.03 0.61 6.90 -51.93 -0.36 0.25 16 30 H -0.02 -0.43 7.55 -51.93 -0.39 -0.83 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.08 1.17 5.86 -51.93 -0.30 0.86 16 33 H 0.03 0.41 7.89 -51.93 -0.41 0.00 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.54 7.48 -51.93 -0.39 1.15 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.37 3.49 9.04 45.56 0.41 3.90 16 38 H 0.14 1.44 6.05 -52.49 -0.32 1.12 16 39 H 0.14 1.13 7.57 -52.49 -0.40 0.73 16 40 H 0.13 0.31 8.14 -51.92 -0.42 -0.12 16 41 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 42 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.14 1.01 7.57 -52.48 -0.40 0.61 16 44 H 0.14 1.27 7.49 -52.49 -0.39 0.88 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -36.03 364.29 -8.69 -44.72 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -5.67 Total: 1.67 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -0.79 Total: -19.84 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.14 Total: -37.53 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -2.29 Total: -29.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 16 Polarization: 18.91 SS G_CDS: -0.62 Total: 18.28 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.03 -8.69 -44.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182418005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.281 kcal (2) G-P(sol) polarization free energy of solvation -36.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds