Wall clock time and date at job start Tue Mar 31 2020 15:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99893 * 2 1 4 4 C 1.50697 * 109.46948 * 66.04834 * 3 2 1 5 5 H 1.07996 * 120.00630 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99680 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99931 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 120.00131 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.46601 * 90.00086 * 8 6 4 10 10 H 1.48496 * 109.47116 * 210.00032 * 8 6 4 11 11 H 1.48504 * 109.47035 * 330.00347 * 8 6 4 12 12 C 1.46900 * 110.99950 * 236.04760 * 2 1 3 13 13 C 1.53008 * 109.46665 * 286.60509 * 12 2 1 14 14 C 1.52997 * 109.47281 * 304.82827 * 13 12 2 15 15 O 1.42901 * 109.47325 * 64.83305 * 13 12 2 16 16 C 1.50699 * 109.46650 * 184.83274 * 13 12 2 17 17 C 1.38239 * 120.00314 * 29.72547 * 16 13 12 18 18 C 1.38241 * 119.99938 * 180.37001 * 17 16 13 19 19 C 1.38236 * 120.00152 * 359.85886 * 18 17 16 20 20 S 1.76195 * 119.99885 * 180.02562 * 19 18 17 21 21 C 1.81407 * 104.44777 * 270.02296 * 20 19 18 22 22 O 1.42097 * 104.27665 * 26.09446 * 20 19 18 23 23 O 1.42101 * 104.27822 * 153.95466 * 20 19 18 24 24 C 1.38232 * 119.99791 * 0.09689 * 19 18 17 25 25 C 1.38234 * 120.00406 * 359.97438 * 24 19 18 26 26 H 1.08994 * 109.47560 * 192.15753 * 1 2 3 27 27 H 1.09000 * 109.47249 * 312.16361 * 1 2 3 28 28 H 1.09006 * 109.47433 * 72.15560 * 1 2 3 29 29 H 1.09005 * 109.46433 * 186.04374 * 3 2 1 30 30 H 1.08999 * 109.47133 * 306.04339 * 3 2 1 31 31 H 0.97006 * 119.99998 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47294 * 166.60739 * 12 2 1 33 33 H 1.08992 * 109.47464 * 46.60221 * 12 2 1 34 34 H 1.09001 * 109.47511 * 300.00582 * 14 13 12 35 35 H 1.09004 * 109.47045 * 60.00300 * 14 13 12 36 36 H 1.08993 * 109.47105 * 180.02562 * 14 13 12 37 37 H 0.96704 * 113.99821 * 59.99318 * 15 13 12 38 38 H 1.08000 * 119.99739 * 0.27462 * 17 16 13 39 39 H 1.07991 * 119.99632 * 179.97438 * 18 17 16 40 40 H 1.09000 * 109.46992 * 60.00267 * 21 20 19 41 41 H 1.09000 * 109.46706 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47162 * 300.00124 * 21 20 19 43 43 H 1.08005 * 119.99798 * 179.97438 * 24 19 18 44 44 H 1.08001 * 120.00005 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5115 2.0485 6 6 2.0277 3.3491 1.5289 7 7 1.7144 3.9389 2.6619 8 14 3.0020 4.2753 0.2319 9 1 2.0661 4.9798 -0.6808 10 1 3.8888 5.2662 0.8928 11 1 3.8255 3.3162 -0.5474 12 6 1.9954 -0.7660 -1.1376 13 6 1.7933 -2.2611 -0.8829 14 6 2.4336 -2.6420 0.4534 15 8 0.3949 -2.5525 -0.8413 16 6 2.4382 -3.0512 -1.9923 17 6 3.5449 -2.5452 -2.6483 18 6 4.1318 -3.2666 -3.6711 19 6 3.6140 -4.4953 -4.0359 20 16 4.3626 -5.4150 -5.3391 21 6 3.5013 -4.8613 -6.8366 22 8 5.7132 -4.9736 -5.3486 23 8 4.0356 -6.7666 -5.0468 24 6 2.5080 -5.0016 -3.3793 25 6 1.9201 -4.2797 -2.3576 26 1 -0.3634 -1.0045 0.2164 27 1 -0.3634 0.6898 0.7617 28 1 -0.3634 0.3149 -0.9783 29 1 3.0797 1.3443 -0.1082 30 1 1.5611 1.9273 -0.8309 31 1 1.9896 4.8549 2.8241 32 1 3.0589 -0.5579 -1.2548 33 1 1.4665 -0.4774 -2.0459 34 1 3.5002 -2.4197 0.4217 35 1 1.9671 -2.0705 1.2558 36 1 2.2900 -3.7071 0.6345 37 1 -0.0765 -2.3356 -1.6574 38 1 3.9499 -1.5856 -2.3628 39 1 4.9961 -2.8711 -4.1838 40 1 3.6441 -3.7880 -6.9619 41 1 3.9051 -5.3855 -7.7027 42 1 2.4371 -5.0780 -6.7448 43 1 2.1031 -5.9614 -3.6647 44 1 1.0557 -4.6752 -1.8449 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182418005.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:00 Heat of formation + Delta-G solvation = -104.706530 kcal Electronic energy + Delta-G solvation = -25979.475727 eV Core-core repulsion = 22216.711786 eV Total energy + Delta-G solvation = -3762.763941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17378 -39.03537 -38.12647 -37.06547 -36.93587 -34.60202 -33.67636 -32.04633 -30.91702 -30.21300 -29.75885 -28.13036 -25.83233 -24.54977 -23.70774 -22.13856 -21.21768 -19.99733 -19.06612 -18.90979 -18.04622 -17.14798 -17.09029 -16.87495 -16.48851 -16.09890 -15.95378 -15.72042 -15.41858 -14.95053 -14.74391 -14.43346 -14.36052 -14.09640 -13.98428 -13.92102 -13.65720 -13.42964 -13.28843 -13.13014 -13.07360 -13.03193 -12.66676 -12.61883 -12.50636 -12.39840 -12.27192 -12.01646 -11.84315 -11.75782 -11.60349 -11.48639 -10.79740 -10.72929 -10.18076 -10.03471 -8.97876 -8.28193 -6.31452 -0.84426 -0.23070 0.30426 1.33416 1.35687 1.46086 1.93574 2.33808 2.39736 3.02456 3.05353 3.06654 3.20213 3.26869 3.70535 3.77543 3.93677 3.97642 4.07632 4.13011 4.21581 4.32279 4.46997 4.54070 4.57748 4.68504 4.71667 4.75788 4.90277 4.92402 4.97921 4.98580 5.02726 5.06450 5.10677 5.15841 5.34079 5.41914 5.48474 5.54349 5.83097 5.99175 6.37448 6.65277 6.75473 6.78652 7.32006 8.88590 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020735 B = 0.002740 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.024968 B =10215.816469 C =11040.452782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.535 5.535 3 C 0.170 3.830 4 C -0.514 4.514 5 H 0.036 0.964 6 C 0.005 3.995 7 N -0.950 5.950 8 Si 0.948 3.052 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.246 1.246 12 C 0.029 3.971 13 C 0.185 3.815 14 C -0.123 4.123 15 O -0.550 6.550 16 C -0.061 4.061 17 C -0.144 4.144 18 C -0.032 4.032 19 C -0.663 4.663 20 S 2.509 3.491 21 C -0.625 4.625 22 O -0.979 6.979 23 O -0.976 6.976 24 C -0.030 4.030 25 C -0.127 4.127 26 H 0.094 0.906 27 H 0.037 0.963 28 H 0.020 0.980 29 H 0.030 0.970 30 H -0.015 1.015 31 H 0.266 0.734 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.385 0.615 38 H 0.138 0.862 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.159 0.841 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 -19.066 -22.968 29.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.259 5.259 3 C 0.043 3.957 4 C -0.552 4.552 5 H 0.054 0.946 6 C -0.192 4.192 7 N -0.591 5.591 8 Si 0.771 3.229 9 H -0.194 1.194 10 H -0.209 1.209 11 H -0.170 1.170 12 C -0.100 4.100 13 C 0.144 3.856 14 C -0.180 4.180 15 O -0.357 6.357 16 C -0.062 4.062 17 C -0.163 4.163 18 C -0.051 4.051 19 C -0.749 4.749 20 S 2.692 3.308 21 C -0.779 4.779 22 O -0.976 6.976 23 O -0.974 6.974 24 C -0.049 4.049 25 C -0.145 4.145 26 H 0.113 0.887 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.048 0.952 30 H 0.003 0.997 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.234 0.766 38 H 0.156 0.844 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.171 0.829 42 H 0.172 0.828 43 H 0.176 0.824 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 2.585 -19.936 -21.711 29.589 hybrid contribution -0.670 2.162 -0.818 2.407 sum 1.915 -17.774 -22.529 28.760 Atomic orbital electron populations 1.22463 0.87216 1.02748 0.98921 1.61751 1.08558 1.14106 1.41467 1.19986 0.95181 0.86114 0.94430 1.21262 1.34615 0.97439 1.01899 0.94552 1.25877 0.97079 0.98492 0.97729 1.70061 1.48664 1.13874 1.26455 0.85707 0.79211 0.78748 0.79196 1.19368 1.20860 1.16990 1.22934 1.01095 0.93926 0.92023 1.19913 0.81529 0.90740 0.93459 1.21556 1.00028 1.01159 0.95284 1.86579 1.19132 1.87449 1.42523 1.20880 0.95233 0.95347 0.94757 1.21467 0.96547 1.01317 0.96945 1.21139 0.97221 0.91687 0.95010 1.30690 1.11120 1.10379 1.22739 1.04769 0.74725 0.73789 0.77470 1.30036 1.15853 1.14884 1.17086 1.93540 1.33891 1.82795 1.87369 1.93536 1.85295 1.34013 1.84508 1.21191 0.91818 0.98864 0.93031 1.21290 1.01430 0.93940 0.97859 0.88738 0.94379 0.96195 0.95214 0.99728 0.92489 0.89960 0.93859 0.91424 0.91923 0.91995 0.76570 0.84404 0.82794 0.83021 0.82876 0.82752 0.82365 0.83505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.27 8.90 127.69 1.14 2.41 16 2 N -0.54 -20.89 3.73 -927.05 -3.46 -24.34 16 3 C 0.17 7.89 3.78 85.56 0.32 8.21 16 4 C -0.51 -29.47 8.89 25.60 0.23 -29.24 16 5 H 0.04 2.35 7.45 -2.91 -0.02 2.33 16 6 C 0.01 0.30 5.47 84.65 0.46 0.77 16 7 N -0.95 -59.42 13.96 21.45 0.30 -59.12 16 8 Si 0.95 43.36 27.47 68.60 1.88 45.25 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.25 -10.31 6.54 99.48 0.65 -9.66 16 12 C 0.03 0.83 3.76 86.31 0.32 1.16 16 13 C 0.18 4.56 0.98 -11.54 -0.01 4.55 16 14 C -0.12 -3.45 8.61 71.98 0.62 -2.83 16 15 O -0.55 -12.66 9.02 -148.98 -1.34 -14.00 16 16 C -0.06 -1.27 4.81 -19.86 -0.10 -1.37 16 17 C -0.14 -2.88 9.14 22.27 0.20 -2.67 16 18 C -0.03 -0.56 9.47 22.27 0.21 -0.35 16 19 C -0.66 -10.51 5.66 22.27 0.13 -10.39 16 20 S 2.51 32.50 5.80 -56.49 -0.33 32.18 16 21 C -0.62 -1.44 10.80 113.37 1.22 -0.22 16 22 O -0.98 -20.09 17.13 -127.65 -2.19 -22.28 16 23 O -0.98 -19.27 17.13 -127.65 -2.19 -21.46 16 24 C -0.03 -0.48 9.47 22.27 0.21 -0.27 16 25 C -0.13 -2.27 9.35 22.27 0.21 -2.07 16 26 H 0.09 3.11 5.81 -2.39 -0.01 3.10 16 27 H 0.04 1.68 6.62 -2.39 -0.02 1.66 16 28 H 0.02 0.65 7.93 -2.38 -0.02 0.63 16 29 H 0.03 1.36 6.90 -2.38 -0.02 1.34 16 30 H -0.01 -0.68 7.55 -2.39 -0.02 -0.70 16 31 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 32 H 0.08 2.32 5.86 -2.39 -0.01 2.31 16 33 H 0.04 1.14 7.89 -2.39 -0.02 1.13 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.06 2.13 7.48 -2.39 -0.02 2.11 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.39 6.30 9.04 -74.05 -0.67 5.63 16 38 H 0.14 2.66 6.05 -2.91 -0.02 2.64 16 39 H 0.15 2.18 7.57 -2.92 -0.02 2.16 16 40 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.15 -0.15 8.14 -2.39 -0.02 -0.17 16 42 H 0.15 -0.18 8.14 -2.39 -0.02 -0.20 16 43 H 0.16 1.87 7.57 -2.91 -0.02 1.85 16 44 H 0.15 2.35 7.49 -2.91 -0.02 2.33 16 Total: -1.00 -80.86 364.29 -1.86 -82.72 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.29 Total: 13.38 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: 5.17 Total: -32.32 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -3.16 Total: -83.46 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -5.72 Total: -57.74 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Atomic # 16 Polarization: 32.50 SS G_CDS: -0.33 Total: 32.18 kcal Total: -80.86 -1.86 -82.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182418005.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.991 kcal (2) G-P(sol) polarization free energy of solvation -80.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds