Wall clock time and date at job start Tue Mar 31 2020 15:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46905 * 111.00126 * 2 1 4 4 C 1.50702 * 109.46909 * 61.23538 * 3 2 1 5 5 H 1.07997 * 119.99872 * 0.02562 * 4 3 2 6 6 C 1.37867 * 119.99791 * 179.97438 * 4 3 2 7 7 N 1.31519 * 120.00395 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00109 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47174 * 59.99860 * 8 6 4 10 10 H 1.48503 * 109.47305 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47154 * 299.99989 * 8 6 4 12 12 C 1.46909 * 110.99788 * 236.04770 * 2 1 3 13 13 C 1.52997 * 109.46942 * 201.34631 * 12 2 1 14 14 C 1.53007 * 109.46992 * 54.25194 * 13 12 2 15 15 O 1.42893 * 109.47379 * 294.25217 * 13 12 2 16 16 C 1.50701 * 109.46858 * 174.24990 * 13 12 2 17 17 C 1.38230 * 120.00075 * 150.00302 * 16 13 12 18 18 C 1.38228 * 120.00269 * 180.02562 * 17 16 13 19 19 C 1.38232 * 119.99906 * 0.25494 * 18 17 16 20 20 S 1.76205 * 120.00158 * 179.72397 * 19 18 17 21 21 C 1.81400 * 104.44838 * 89.99973 * 20 19 18 22 22 O 1.42101 * 104.27707 * 206.07307 * 20 19 18 23 23 O 1.42106 * 104.27492 * 333.93005 * 20 19 18 24 24 C 1.38231 * 120.00148 * 359.48960 * 19 18 17 25 25 C 1.38237 * 119.99822 * 330.02311 * 16 13 12 26 26 H 1.08999 * 109.47263 * 188.76806 * 1 2 3 27 27 H 1.09006 * 109.46882 * 308.76946 * 1 2 3 28 28 H 1.09002 * 109.47321 * 68.76475 * 1 2 3 29 29 H 1.08996 * 109.46797 * 181.23716 * 3 2 1 30 30 H 1.08999 * 109.47232 * 301.23353 * 3 2 1 31 31 H 0.96996 * 120.00542 * 180.02562 * 7 6 4 32 32 H 1.08998 * 109.46964 * 81.34678 * 12 2 1 33 33 H 1.08999 * 109.46635 * 321.34934 * 12 2 1 34 34 H 1.08996 * 109.46941 * 184.87578 * 14 13 12 35 35 H 1.08999 * 109.47093 * 304.87802 * 14 13 12 36 36 H 1.09004 * 109.46953 * 64.87845 * 14 13 12 37 37 H 0.96700 * 113.99975 * 299.99704 * 15 13 12 38 38 H 1.08008 * 119.99954 * 359.97438 * 17 16 13 39 39 H 1.08001 * 120.00346 * 179.97438 * 18 17 16 40 40 H 1.08997 * 109.46903 * 60.00358 * 21 20 19 41 41 H 1.09004 * 109.46653 * 179.97438 * 21 20 19 42 42 H 1.08997 * 109.47064 * 300.00099 * 21 20 19 43 43 H 1.08001 * 120.00458 * 180.22844 * 24 19 18 44 44 H 1.07998 * 120.00222 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.5372 2.0854 1.2455 5 1 0.9173 1.5716 1.9653 6 6 1.9103 3.3941 1.4666 7 7 2.6656 4.0197 0.5904 8 14 1.3428 4.2790 3.0108 9 1 1.8432 3.5562 4.2076 10 1 1.8749 5.6654 3.0108 11 1 -0.1413 4.3190 3.0413 12 6 1.9954 -0.7660 -1.1377 13 6 3.4325 -1.1986 -0.8400 14 6 3.4732 -1.9507 0.4918 15 8 4.2708 -0.0441 -0.7608 16 6 3.9238 -2.1015 -1.9421 17 6 5.2677 -2.1306 -2.2642 18 6 5.7183 -2.9583 -3.2754 19 6 4.8241 -3.7531 -3.9680 20 16 5.3974 -4.8029 -5.2619 21 6 5.7955 -6.3666 -4.4332 22 8 4.2687 -4.9615 -6.1105 23 8 6.5813 -4.1700 -5.7280 24 6 3.4810 -3.7280 -3.6424 25 6 3.0303 -2.9002 -2.6310 26 1 -0.3634 -1.0156 0.1566 27 1 -0.3633 0.6436 0.8013 28 1 -0.3634 0.3722 -0.9579 29 1 3.0849 1.3424 -0.0222 30 1 1.6283 1.9017 -0.8787 31 1 2.9284 4.9403 0.7461 32 1 1.9813 -0.1436 -2.0324 33 1 1.3763 -1.6485 -1.2991 34 1 4.5072 -2.1832 0.7463 35 1 3.0374 -1.3288 1.2738 36 1 2.9038 -2.8761 0.4040 37 1 4.2934 0.4820 -1.5719 38 1 5.9656 -1.5059 -1.7264 39 1 6.7682 -2.9808 -3.5274 40 1 4.8998 -6.7625 -3.9547 41 1 6.1620 -7.0839 -5.1676 42 1 6.5636 -6.1931 -3.6795 43 1 2.7829 -4.3517 -4.1810 44 1 1.9803 -2.8775 -2.3793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182418028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:04 Heat of formation + Delta-G solvation = -105.301231 kcal Electronic energy + Delta-G solvation = -26089.837151 eV Core-core repulsion = 22327.047421 eV Total energy + Delta-G solvation = -3762.789729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13632 -38.97821 -38.12084 -36.99173 -36.88244 -34.65554 -33.58621 -32.03787 -30.79286 -30.15925 -29.26934 -28.02028 -25.93426 -24.62408 -23.73959 -22.32479 -21.11743 -19.99069 -18.97624 -18.48438 -18.02330 -17.14963 -17.07823 -16.85932 -16.69181 -16.03664 -15.86044 -15.71491 -15.10607 -14.89663 -14.82478 -14.44239 -14.12323 -13.91615 -13.90808 -13.82247 -13.76420 -13.21876 -13.16496 -13.12680 -13.11556 -13.01668 -12.72678 -12.61774 -12.57546 -12.31455 -12.20662 -12.10020 -11.91331 -11.84810 -11.53493 -11.26958 -10.75829 -10.42588 -10.15322 -10.03110 -8.94578 -8.15602 -6.22617 -0.83575 -0.21786 0.30859 1.40382 1.43240 1.50680 1.93615 2.40835 2.42199 3.06298 3.12488 3.17134 3.20862 3.33269 3.75083 3.80979 3.94966 4.02212 4.12678 4.14614 4.23078 4.31756 4.47651 4.55530 4.57770 4.70970 4.76032 4.81233 4.93692 4.99529 4.99843 5.01174 5.08277 5.13292 5.16741 5.28900 5.44306 5.53193 5.58609 5.68213 5.83595 6.15120 6.39712 6.67983 6.75551 6.93821 7.44839 8.95353 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.029668 B = 0.002564 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.546436 B =10917.203075 C =11217.088601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.535 5.535 3 C 0.193 3.807 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.933 5.933 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.032 3.968 13 C 0.174 3.826 14 C -0.118 4.118 15 O -0.555 6.555 16 C -0.061 4.061 17 C -0.134 4.134 18 C -0.031 4.031 19 C -0.665 4.665 20 S 2.508 3.492 21 C -0.623 4.623 22 O -0.976 6.976 23 O -0.979 6.979 24 C -0.029 4.029 25 C -0.140 4.140 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.007 0.993 29 H 0.052 0.948 30 H -0.055 1.055 31 H 0.261 0.739 32 H 0.018 0.982 33 H 0.101 0.899 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.376 0.624 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.161 0.839 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.967 -24.070 -8.615 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.259 5.259 3 C 0.067 3.933 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.573 5.573 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.097 4.097 13 C 0.132 3.868 14 C -0.175 4.175 15 O -0.361 6.361 16 C -0.062 4.062 17 C -0.153 4.153 18 C -0.049 4.049 19 C -0.750 4.750 20 S 2.692 3.308 21 C -0.777 4.777 22 O -0.974 6.974 23 O -0.976 6.976 24 C -0.048 4.048 25 C -0.158 4.158 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.026 0.974 29 H 0.070 0.930 30 H -0.037 1.037 31 H 0.070 0.930 32 H 0.037 0.963 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.224 0.776 38 H 0.153 0.847 39 H 0.173 0.827 40 H 0.173 0.827 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.179 0.821 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 5.348 -24.099 -8.477 26.100 hybrid contribution -0.736 1.891 0.164 2.036 sum 4.611 -22.208 -8.314 24.157 Atomic orbital electron populations 1.22304 0.88039 1.01679 0.99417 1.62033 1.07493 1.15733 1.40624 1.19791 0.97218 0.83008 0.93262 1.21509 1.31143 0.96949 1.06456 0.92213 1.25827 0.95474 0.98443 0.99904 1.70074 1.37769 1.12167 1.37319 0.85548 0.78711 0.77265 0.79745 1.19469 1.21085 1.19415 1.22847 0.96641 0.98506 0.91712 1.20145 0.88130 0.84227 0.94258 1.21549 1.01871 0.99386 0.94695 1.86655 1.68873 1.38882 1.41668 1.20941 0.94707 0.95538 0.95053 1.21262 0.95494 0.99998 0.98528 1.21132 1.00239 0.91886 0.91676 1.30715 1.02687 1.19499 1.22141 1.04812 0.73275 0.78019 0.74735 1.30023 1.14550 1.17389 1.15723 1.93536 1.52297 1.87329 1.64213 1.93538 1.49367 1.75421 1.79307 1.21192 0.93886 0.95899 0.93813 1.21469 1.00717 0.97014 0.96643 0.90028 0.92450 0.97440 0.93017 1.03735 0.93002 0.96342 0.88095 0.92552 0.91932 0.89678 0.77607 0.84667 0.82691 0.82691 0.82735 0.82924 0.82126 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.26 9.33 127.69 1.19 2.45 16 2 N -0.54 -22.07 3.61 -927.01 -3.35 -25.41 16 3 C 0.19 10.12 4.48 85.56 0.38 10.51 16 4 C -0.52 -29.65 8.36 25.60 0.21 -29.44 16 5 H 0.06 3.32 6.82 -2.91 -0.02 3.30 16 6 C 0.00 0.07 5.46 84.65 0.46 0.53 16 7 N -0.93 -56.67 13.29 21.44 0.28 -56.38 16 8 Si 0.96 44.86 29.54 68.60 2.03 46.88 16 9 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 12 C 0.03 1.04 3.82 86.30 0.33 1.37 16 13 C 0.17 5.29 1.00 -11.54 -0.01 5.28 16 14 C -0.12 -3.48 8.69 71.98 0.63 -2.85 16 15 O -0.55 -20.32 9.14 -148.98 -1.36 -21.68 16 16 C -0.06 -1.53 4.81 -19.87 -0.10 -1.63 16 17 C -0.13 -3.16 9.35 22.27 0.21 -2.95 16 18 C -0.03 -0.61 9.47 22.27 0.21 -0.40 16 19 C -0.66 -11.94 5.66 22.27 0.13 -11.81 16 20 S 2.51 36.09 5.80 -56.49 -0.33 35.76 16 21 C -0.62 -1.96 10.80 113.37 1.22 -0.73 16 22 O -0.98 -20.71 17.13 -127.65 -2.19 -22.89 16 23 O -0.98 -21.44 17.13 -127.65 -2.19 -23.63 16 24 C -0.03 -0.54 9.47 22.27 0.21 -0.32 16 25 C -0.14 -2.94 9.14 22.27 0.20 -2.73 16 26 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 27 H 0.06 2.37 6.32 -2.38 -0.02 2.36 16 28 H 0.01 0.26 8.13 -2.39 -0.02 0.24 16 29 H 0.05 2.88 5.26 -2.39 -0.01 2.87 16 30 H -0.05 -3.21 8.14 -2.39 -0.02 -3.23 16 31 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 32 H 0.02 0.65 7.97 -2.39 -0.02 0.63 16 33 H 0.10 2.63 5.94 -2.39 -0.01 2.61 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 2.27 7.29 -2.39 -0.02 2.25 16 36 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.38 12.73 9.00 -74.06 -0.67 12.06 16 38 H 0.14 3.23 7.48 -2.91 -0.02 3.21 16 39 H 0.16 2.50 7.57 -2.91 -0.02 2.48 16 40 H 0.15 -0.05 8.14 -2.39 -0.02 -0.07 16 41 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.15 0.04 8.14 -2.39 -0.02 0.02 16 43 H 0.16 2.18 7.58 -2.91 -0.02 2.16 16 44 H 0.15 2.63 6.04 -2.91 -0.02 2.61 16 Total: -1.00 -80.15 367.47 -1.47 -81.62 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.35 Total: 18.46 kcal Atomic # 6 Polarization: -38.01 SS G_CDS: 5.28 Total: -32.73 kcal Atomic # 7 Polarization: -78.73 SS G_CDS: -3.06 Total: -81.80 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -5.73 Total: -68.20 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 36.09 SS G_CDS: -0.33 Total: 35.76 kcal Total: -80.15 -1.47 -81.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182418028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.678 kcal (2) G-P(sol) polarization free energy of solvation -80.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds