Wall clock time and date at job start Tue Mar 31 2020 15:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47191 * 2 1 4 4 H 1.09004 * 109.46963 * 178.48128 * 3 2 1 5 5 C 1.50702 * 109.47224 * 298.47584 * 3 2 1 6 6 H 1.07997 * 119.99789 * 119.99771 * 5 3 2 7 7 C 1.37877 * 119.99896 * 300.00388 * 5 3 2 8 8 N 1.31513 * 120.00426 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99742 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46881 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46896 * 119.99940 * 9 7 5 12 12 H 1.48501 * 109.47233 * 240.00234 * 9 7 5 13 13 N 1.46493 * 109.47244 * 58.47955 * 3 2 1 14 14 S 1.65606 * 119.99897 * 96.25911 * 13 3 2 15 15 O 1.42098 * 106.40335 * 311.68362 * 14 13 3 16 16 O 1.42104 * 106.40222 * 178.76336 * 14 13 3 17 17 C 1.76206 * 107.21600 * 65.22602 * 14 13 3 18 18 C 1.38264 * 119.94018 * 269.72108 * 17 14 13 19 19 C 1.38149 * 120.05502 * 179.72387 * 18 17 14 20 20 C 1.50702 * 120.02758 * 180.27252 * 19 18 17 21 21 C 1.38726 * 119.93934 * 0.55425 * 19 18 17 22 22 O 1.35902 * 120.05315 * 179.74345 * 21 19 18 23 23 C 1.42899 * 117.00059 * 269.97878 * 22 21 19 24 24 C 1.38735 * 119.89204 * 359.72358 * 21 19 18 25 25 C 1.50698 * 120.02724 * 179.97438 * 24 21 19 26 26 C 1.38140 * 119.94050 * 0.02562 * 24 21 19 27 27 H 1.09004 * 109.46641 * 295.72161 * 1 2 3 28 28 H 1.08993 * 109.47198 * 55.71217 * 1 2 3 29 29 H 1.08992 * 109.47199 * 175.72027 * 1 2 3 30 30 H 1.08997 * 109.46569 * 239.99532 * 2 1 3 31 31 H 1.09002 * 109.46845 * 120.00284 * 2 1 3 32 32 H 0.96994 * 119.99865 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00013 * 276.25748 * 13 3 2 34 34 H 1.08005 * 119.97565 * 0.02562 * 18 17 14 35 35 H 1.09000 * 109.47541 * 270.27758 * 20 19 18 36 36 H 1.08999 * 109.47075 * 30.28060 * 20 19 18 37 37 H 1.08997 * 109.46435 * 150.28007 * 20 19 18 38 38 H 1.09002 * 109.47354 * 299.99966 * 23 22 21 39 39 H 1.09001 * 109.47439 * 60.00227 * 23 22 21 40 40 H 1.09003 * 109.47317 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47209 * 270.02016 * 25 24 21 42 42 H 1.09007 * 109.47081 * 30.02252 * 25 24 21 43 43 H 1.09001 * 109.47111 * 150.02514 * 25 24 21 44 44 H 1.08004 * 119.96588 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1298 1.4425 0.0272 5 6 1.5688 2.1419 -1.2489 6 1 0.9457 3.0207 -1.1732 7 6 1.9331 1.6598 -2.4882 8 7 2.6922 0.5898 -2.5805 9 14 1.3484 2.5264 -4.0363 10 1 0.5138 3.6967 -3.6632 11 1 2.5231 2.9863 -4.8198 12 1 0.5439 1.5855 -4.8565 13 7 1.5221 2.1436 1.1774 14 16 2.4499 2.2646 2.5437 15 8 2.9430 0.9590 2.8109 16 8 1.6889 3.0148 3.4804 17 6 3.8514 3.2521 2.1367 18 6 5.0033 2.6529 1.6618 19 6 6.1015 3.4254 1.3365 20 6 7.3547 2.7721 0.8132 21 6 6.0516 4.8023 1.4976 22 8 7.1324 5.5640 1.1833 23 6 8.0815 5.8043 2.2242 24 6 4.8965 5.4007 1.9798 25 6 4.8391 6.8961 2.1565 26 6 3.7994 4.6242 2.2986 27 1 -0.3633 0.4460 0.9259 28 1 -0.3633 0.5789 -0.8490 29 1 -0.3633 -1.0247 -0.0767 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 2.9481 0.2504 -3.4523 33 1 0.6357 2.5369 1.1566 34 1 5.0431 1.5804 1.5404 35 1 8.0063 2.5149 1.6482 36 1 7.0912 1.8672 0.2657 37 1 7.8729 3.4620 0.1471 38 1 7.5916 6.3183 3.0511 39 1 8.4848 4.8543 2.5747 40 1 8.8921 6.4241 1.8408 41 1 5.1750 7.1565 3.1603 42 1 5.4867 7.3740 1.4213 43 1 3.8143 7.2396 2.0158 44 1 2.8997 5.0896 2.6736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186432183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:56 Heat of formation + Delta-G solvation = -102.703276 kcal Electronic energy + Delta-G solvation = -27081.072956 eV Core-core repulsion = 23318.395882 eV Total energy + Delta-G solvation = -3762.677074 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26809 -37.35686 -36.76516 -35.95183 -35.30013 -33.60591 -32.20324 -31.40347 -30.28929 -28.14935 -26.74367 -26.37486 -26.28889 -23.54954 -22.48603 -21.03724 -20.04414 -18.61835 -17.76952 -17.33370 -16.69061 -16.66553 -16.13807 -15.77593 -15.16163 -14.60452 -14.07607 -14.03668 -13.68750 -13.58692 -13.41460 -13.23085 -13.12269 -12.98797 -12.74032 -12.41950 -12.20933 -11.96322 -11.92197 -11.69223 -11.59424 -11.56182 -11.51932 -11.41019 -11.03663 -10.88300 -10.63325 -10.47249 -10.32587 -10.05838 -10.00716 -9.67309 -9.13894 -8.79174 -8.59821 -8.55523 -8.22971 -6.13373 -4.20171 0.75546 1.10916 1.36630 3.15956 3.23120 3.32010 3.34741 3.72494 3.81508 4.31575 4.34814 4.63315 4.72671 5.00336 5.08121 5.10988 5.18665 5.26883 5.29143 5.34958 5.42050 5.52211 5.56273 5.61590 5.72589 5.82196 6.04991 6.20961 6.22332 6.26492 6.28042 6.42091 6.46532 6.55095 6.64699 6.71575 7.04202 7.28396 7.40208 7.44928 7.52138 7.67993 7.82052 8.04621 8.27745 8.82048 9.45245 10.91927 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.005131 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.348238 B = 5455.361594 C = 6570.644002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.136 4.136 3 C 0.279 3.721 4 H 0.041 0.959 5 C -0.518 4.518 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 N -1.096 6.096 14 S 2.689 3.311 15 O -0.962 6.962 16 O -0.983 6.983 17 C -0.662 4.662 18 C -0.004 4.004 19 C -0.120 4.120 20 C -0.112 4.112 21 C 0.139 3.861 22 O -0.335 6.335 23 C 0.037 3.963 24 C -0.126 4.126 25 C -0.109 4.109 26 C -0.013 4.013 27 H 0.030 0.970 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.410 0.590 34 H 0.145 0.855 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.848 8.071 8.364 14.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.176 4.176 3 C 0.175 3.825 4 H 0.059 0.941 5 C -0.558 4.558 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.858 5.858 14 S 2.778 3.222 15 O -0.952 6.952 16 O -0.973 6.973 17 C -0.747 4.747 18 C -0.023 4.023 19 C -0.121 4.121 20 C -0.169 4.169 21 C 0.095 3.905 22 O -0.252 6.252 23 C -0.057 4.057 24 C -0.128 4.128 25 C -0.166 4.166 26 C -0.032 4.032 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.118 0.882 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.163 0.837 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 8.024 7.592 8.867 14.164 hybrid contribution -0.166 0.973 -1.300 1.632 sum 7.858 8.565 7.567 13.870 Atomic orbital electron populations 1.21567 0.97785 0.98796 1.00650 1.21966 0.94959 0.98917 1.01720 1.18578 0.93817 0.88722 0.81407 0.94124 1.21255 1.32479 1.12201 0.89850 0.91787 1.24865 0.94893 0.94912 0.98937 1.69862 1.35727 1.22245 1.24505 0.86497 0.78580 0.79637 0.83056 1.19734 1.21017 1.20896 1.55507 1.27990 1.70449 1.31821 1.01881 0.73377 0.73840 0.73144 1.93563 1.81343 1.36493 1.83804 1.93516 1.69749 1.73327 1.60690 1.31158 1.18977 1.08344 1.16270 1.20768 0.90168 1.00394 0.90967 1.20239 0.97650 0.92586 1.01632 1.20717 0.94075 1.01165 1.00901 1.18519 0.87100 0.88855 0.95993 1.85942 1.32552 1.69866 1.36814 1.22968 0.91310 1.00829 0.90594 1.20185 0.94228 0.96981 1.01371 1.20687 1.03262 0.90589 1.02074 1.20621 0.97788 0.91372 0.93418 0.95057 0.91934 0.95537 0.88202 0.94956 0.92668 0.75598 0.83697 0.91484 0.90537 0.90844 0.93489 0.93386 0.88731 0.91503 0.90841 0.91029 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.51 37.16 0.35 -2.35 16 2 C -0.14 -3.14 5.69 -26.73 -0.15 -3.29 16 3 C 0.28 6.45 2.46 -69.09 -0.17 6.28 16 4 H 0.04 1.00 7.27 -51.93 -0.38 0.62 16 5 C -0.52 -12.92 7.51 -34.44 -0.26 -13.18 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -23.50 11.31 55.43 0.63 -22.88 16 9 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 13 N -1.10 -21.70 4.75 -5.89 -0.03 -21.73 16 14 S 2.69 50.84 5.64 -107.50 -0.61 50.23 16 15 O -0.96 -20.28 16.68 -57.17 -0.95 -21.24 16 16 O -0.98 -19.25 17.28 -57.17 -0.99 -20.24 16 17 C -0.66 -11.74 5.84 -39.56 -0.23 -11.97 16 18 C 0.00 -0.07 8.59 -39.60 -0.34 -0.41 16 19 C -0.12 -1.89 5.89 -104.47 -0.62 -2.51 16 20 C -0.11 -1.45 9.79 36.01 0.35 -1.10 16 21 C 0.14 2.11 5.67 -39.22 -0.22 1.88 16 22 O -0.33 -4.44 8.51 -19.43 -0.17 -4.60 16 23 C 0.04 0.34 11.13 101.05 1.12 1.46 16 24 C -0.13 -1.87 5.89 -104.48 -0.62 -2.49 16 25 C -0.11 -1.24 9.79 36.00 0.35 -0.89 16 26 C -0.01 -0.20 9.17 -39.61 -0.36 -0.57 16 27 H 0.03 0.59 7.59 -51.93 -0.39 0.19 16 28 H 0.06 1.35 7.12 -51.93 -0.37 0.98 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 2.53 6.03 -51.93 -0.31 2.21 16 31 H 0.03 0.73 7.80 -51.93 -0.40 0.32 16 32 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 33 H 0.41 7.40 8.68 -34.48 -0.30 7.10 16 34 H 0.15 2.48 7.61 -52.48 -0.40 2.08 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.07 0.92 7.53 -51.93 -0.39 0.52 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.81 7.53 -51.92 -0.39 0.42 16 43 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 44 H 0.14 2.02 7.61 -52.48 -0.40 1.62 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -30.59 373.20 -9.05 -39.64 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.66 Total: 7.45 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -0.88 Total: -27.50 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.60 Total: -44.61 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -2.11 Total: -46.08 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 50.84 SS G_CDS: -0.61 Total: 50.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.59 -9.05 -39.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186432183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.062 kcal (2) G-P(sol) polarization free energy of solvation -30.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds