Wall clock time and date at job start Tue Mar 31 2020 15:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47191 * 2 1 4 4 H 1.09004 * 109.46963 * 178.48128 * 3 2 1 5 5 C 1.50702 * 109.47224 * 298.47584 * 3 2 1 6 6 H 1.07997 * 119.99789 * 119.99771 * 5 3 2 7 7 C 1.37877 * 119.99896 * 300.00388 * 5 3 2 8 8 N 1.31513 * 120.00426 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99742 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46881 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.46896 * 119.99940 * 9 7 5 12 12 H 1.48501 * 109.47233 * 240.00234 * 9 7 5 13 13 N 1.46493 * 109.47244 * 58.47955 * 3 2 1 14 14 S 1.65606 * 119.99897 * 96.25911 * 13 3 2 15 15 O 1.42098 * 106.40335 * 311.68362 * 14 13 3 16 16 O 1.42104 * 106.40222 * 178.76336 * 14 13 3 17 17 C 1.76206 * 107.21600 * 65.22602 * 14 13 3 18 18 C 1.38264 * 119.94018 * 269.72108 * 17 14 13 19 19 C 1.38149 * 120.05502 * 179.72387 * 18 17 14 20 20 C 1.50702 * 120.02758 * 180.27252 * 19 18 17 21 21 C 1.38726 * 119.93934 * 0.55425 * 19 18 17 22 22 O 1.35902 * 120.05315 * 179.74345 * 21 19 18 23 23 C 1.42899 * 117.00059 * 269.97878 * 22 21 19 24 24 C 1.38735 * 119.89204 * 359.72358 * 21 19 18 25 25 C 1.50698 * 120.02724 * 179.97438 * 24 21 19 26 26 C 1.38140 * 119.94050 * 0.02562 * 24 21 19 27 27 H 1.09004 * 109.46641 * 295.72161 * 1 2 3 28 28 H 1.08993 * 109.47198 * 55.71217 * 1 2 3 29 29 H 1.08992 * 109.47199 * 175.72027 * 1 2 3 30 30 H 1.08997 * 109.46569 * 239.99532 * 2 1 3 31 31 H 1.09002 * 109.46845 * 120.00284 * 2 1 3 32 32 H 0.96994 * 119.99865 * 179.97438 * 8 7 5 33 33 H 0.96997 * 120.00013 * 276.25748 * 13 3 2 34 34 H 1.08005 * 119.97565 * 0.02562 * 18 17 14 35 35 H 1.09000 * 109.47541 * 270.27758 * 20 19 18 36 36 H 1.08999 * 109.47075 * 30.28060 * 20 19 18 37 37 H 1.08997 * 109.46435 * 150.28007 * 20 19 18 38 38 H 1.09002 * 109.47354 * 299.99966 * 23 22 21 39 39 H 1.09001 * 109.47439 * 60.00227 * 23 22 21 40 40 H 1.09003 * 109.47317 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47209 * 270.02016 * 25 24 21 42 42 H 1.09007 * 109.47081 * 30.02252 * 25 24 21 43 43 H 1.09001 * 109.47111 * 150.02514 * 25 24 21 44 44 H 1.08004 * 119.96588 * 180.02562 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1298 1.4425 0.0272 5 6 1.5688 2.1419 -1.2489 6 1 0.9457 3.0207 -1.1732 7 6 1.9331 1.6598 -2.4882 8 7 2.6922 0.5898 -2.5805 9 14 1.3484 2.5264 -4.0363 10 1 0.5138 3.6967 -3.6632 11 1 2.5231 2.9863 -4.8198 12 1 0.5439 1.5855 -4.8565 13 7 1.5221 2.1436 1.1774 14 16 2.4499 2.2646 2.5437 15 8 2.9430 0.9590 2.8109 16 8 1.6889 3.0148 3.4804 17 6 3.8514 3.2521 2.1367 18 6 5.0033 2.6529 1.6618 19 6 6.1015 3.4254 1.3365 20 6 7.3547 2.7721 0.8132 21 6 6.0516 4.8023 1.4976 22 8 7.1324 5.5640 1.1833 23 6 8.0815 5.8043 2.2242 24 6 4.8965 5.4007 1.9798 25 6 4.8391 6.8961 2.1565 26 6 3.7994 4.6242 2.2986 27 1 -0.3633 0.4460 0.9259 28 1 -0.3633 0.5789 -0.8490 29 1 -0.3633 -1.0247 -0.0767 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 2.9481 0.2504 -3.4523 33 1 0.6357 2.5369 1.1566 34 1 5.0431 1.5804 1.5404 35 1 8.0063 2.5149 1.6482 36 1 7.0912 1.8672 0.2657 37 1 7.8729 3.4620 0.1471 38 1 7.5916 6.3183 3.0511 39 1 8.4848 4.8543 2.5747 40 1 8.8921 6.4241 1.8408 41 1 5.1750 7.1565 3.1603 42 1 5.4867 7.3740 1.4213 43 1 3.8143 7.2396 2.0158 44 1 2.8997 5.0896 2.6736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186432183.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:55 Heat of formation + Delta-G solvation = -122.212627 kcal Electronic energy + Delta-G solvation = -27081.918945 eV Core-core repulsion = 23318.395882 eV Total energy + Delta-G solvation = -3763.523062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37977 -38.45469 -38.36315 -37.71156 -36.89924 -34.71231 -34.09325 -32.56022 -32.02378 -29.03495 -28.26507 -27.85640 -27.22992 -25.39123 -23.71331 -22.17656 -21.83926 -20.15800 -19.05813 -18.80448 -18.14150 -17.91877 -17.77649 -16.98563 -16.71854 -16.23240 -15.40019 -15.18391 -14.98281 -14.94943 -14.69110 -14.59393 -14.37738 -14.21081 -14.10975 -14.04335 -13.44246 -13.35503 -13.18965 -13.09190 -12.95753 -12.94636 -12.84260 -12.62241 -12.57478 -12.51927 -12.42093 -12.17479 -11.83807 -11.76980 -11.48733 -11.03325 -10.98379 -10.53116 -10.03508 -9.92481 -9.75352 -8.08767 -6.20549 -0.58288 -0.30077 0.15055 1.43419 1.47520 1.56176 1.95095 2.28627 2.48384 2.65701 2.84522 3.21440 3.32992 3.64393 3.73486 4.07540 4.21545 4.23062 4.40013 4.44065 4.48921 4.51111 4.52798 4.67486 4.69382 4.70812 4.72572 4.78371 4.81319 4.89456 4.98412 5.05918 5.13761 5.23096 5.26494 5.30878 5.48896 5.55573 5.61096 5.72932 5.74780 6.11736 6.15495 6.37444 6.45925 6.88445 7.47316 8.96188 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011313 B = 0.005131 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.348238 B = 5455.361594 C = 6570.644002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.136 4.136 3 C 0.285 3.715 4 H 0.021 0.979 5 C -0.523 4.523 6 H 0.066 0.934 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 0.949 3.051 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.281 1.281 13 N -1.096 6.096 14 S 2.706 3.294 15 O -0.989 6.989 16 O -0.988 6.988 17 C -0.676 4.676 18 C -0.026 4.026 19 C -0.131 4.131 20 C -0.110 4.110 21 C 0.141 3.859 22 O -0.344 6.344 23 C 0.029 3.971 24 C -0.129 4.129 25 C -0.108 4.108 26 C -0.024 4.024 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.418 0.582 34 H 0.135 0.865 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.271 10.160 8.642 15.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.176 4.176 3 C 0.179 3.821 4 H 0.039 0.961 5 C -0.563 4.563 6 H 0.084 0.916 7 C -0.176 4.176 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.857 5.857 14 S 2.797 3.203 15 O -0.979 6.979 16 O -0.979 6.979 17 C -0.764 4.764 18 C -0.046 4.046 19 C -0.133 4.133 20 C -0.166 4.166 21 C 0.097 3.903 22 O -0.262 6.262 23 C -0.065 4.065 24 C -0.130 4.130 25 C -0.164 4.164 26 C -0.043 4.043 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.253 0.747 34 H 0.153 0.847 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.139 0.861 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 8.412 9.675 9.164 15.758 hybrid contribution -0.168 0.401 -1.331 1.400 sum 8.244 10.076 7.833 15.193 Atomic orbital electron populations 1.21499 0.95862 0.99851 1.01029 1.21901 0.96719 0.98637 1.00339 1.18299 0.92770 0.88964 0.82023 0.96088 1.21494 1.32073 1.12146 0.90560 0.91574 1.25519 0.95156 0.95500 1.01447 1.69981 1.36749 1.23370 1.24934 0.85637 0.77965 0.78827 0.79986 1.19062 1.21314 1.20723 1.55321 1.28813 1.70555 1.30987 1.01161 0.73272 0.73301 0.72546 1.93522 1.81733 1.38451 1.84188 1.93498 1.70337 1.73286 1.60733 1.30841 1.18276 1.09030 1.18205 1.20810 0.91099 1.00284 0.92398 1.20543 0.98016 0.93287 1.01423 1.20757 0.93377 1.00744 1.01733 1.18663 0.88041 0.88749 0.94830 1.85917 1.32505 1.69305 1.38430 1.23285 0.91083 1.01809 0.90281 1.20587 0.93469 0.98832 1.00162 1.20778 1.04215 0.87900 1.03529 1.20885 0.98977 0.90783 0.93660 0.93387 0.92962 0.93970 0.90614 0.95256 0.92762 0.74691 0.84729 0.89150 0.91303 0.90208 0.92426 0.92859 0.86078 0.89239 0.90409 0.90030 0.82726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.51 71.98 0.68 -4.44 16 2 C -0.14 -6.40 5.69 30.60 0.17 -6.22 16 3 C 0.28 13.41 2.46 44.25 0.11 13.52 16 4 H 0.02 1.08 7.27 -2.39 -0.02 1.07 16 5 C -0.52 -26.16 7.51 25.60 0.19 -25.97 16 6 H 0.07 3.21 7.81 -2.91 -0.02 3.19 16 7 C 0.02 1.24 5.30 84.65 0.45 1.69 16 8 N -0.91 -49.21 11.31 21.45 0.24 -48.97 16 9 Si 0.95 41.38 29.54 68.60 2.03 43.41 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 13 N -1.10 -43.61 4.75 -172.53 -0.82 -44.43 16 14 S 2.71 103.41 5.64 -56.49 -0.32 103.09 16 15 O -0.99 -42.80 16.68 -128.00 -2.14 -44.93 16 16 O -0.99 -38.29 17.28 -128.00 -2.21 -40.50 16 17 C -0.68 -24.14 5.84 22.28 0.13 -24.01 16 18 C -0.03 -0.95 8.59 22.25 0.19 -0.75 16 19 C -0.13 -4.11 5.89 -19.77 -0.12 -4.22 16 20 C -0.11 -2.77 9.79 71.24 0.70 -2.07 16 21 C 0.14 4.08 5.67 22.51 0.13 4.20 16 22 O -0.34 -8.32 8.51 -92.44 -0.79 -9.11 16 23 C 0.03 0.43 11.13 113.37 1.26 1.70 16 24 C -0.13 -3.60 5.89 -19.77 -0.12 -3.72 16 25 C -0.11 -2.14 9.79 71.24 0.70 -1.44 16 26 C -0.02 -0.74 9.17 22.25 0.20 -0.54 16 27 H 0.05 1.77 7.59 -2.38 -0.02 1.75 16 28 H 0.05 2.23 7.12 -2.39 -0.02 2.21 16 29 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 3.94 6.03 -2.39 -0.01 3.93 16 31 H 0.03 1.35 7.80 -2.39 -0.02 1.33 16 32 H 0.26 13.60 8.31 -92.71 -0.77 12.83 16 33 H 0.42 14.93 8.68 -96.75 -0.84 14.09 16 34 H 0.13 4.92 7.61 -2.91 -0.02 4.89 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.07 1.82 8.09 -2.39 -0.02 1.80 16 37 H 0.08 1.89 7.53 -2.39 -0.02 1.87 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 1.49 7.53 -2.38 -0.02 1.47 16 43 H 0.08 1.46 8.09 -2.39 -0.02 1.44 16 44 H 0.16 4.24 7.61 -2.91 -0.02 4.22 16 Total: -1.00 -64.89 373.20 0.85 -64.04 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.17 Total: 29.68 kcal Atomic # 6 Polarization: -56.97 SS G_CDS: 4.69 Total: -52.28 kcal Atomic # 7 Polarization: -92.82 SS G_CDS: -0.58 Total: -93.40 kcal Atomic # 8 Polarization: -89.41 SS G_CDS: -5.13 Total: -94.54 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Atomic # 16 Polarization: 103.41 SS G_CDS: -0.32 Total: 103.09 kcal Total: -64.89 0.85 -64.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186432183.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.173 kcal (2) G-P(sol) polarization free energy of solvation -64.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds