Wall clock time and date at job start Tue Mar 31 2020 15:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47029 * 2 1 4 4 H 1.08997 * 109.47563 * 304.67567 * 3 2 1 5 5 C 1.50702 * 109.46950 * 184.67789 * 3 2 1 6 6 H 1.07998 * 120.00279 * 240.00472 * 5 3 2 7 7 C 1.37878 * 120.00000 * 60.00134 * 5 3 2 8 8 N 1.31515 * 119.99842 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00309 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47487 * 119.99367 * 9 7 5 12 12 H 1.48497 * 109.47223 * 239.99897 * 9 7 5 13 13 N 1.46499 * 109.47258 * 64.68265 * 3 2 1 14 14 S 1.65601 * 119.99796 * 243.51364 * 13 3 2 15 15 O 1.42101 * 106.40283 * 51.38550 * 14 13 3 16 16 O 1.42095 * 106.40269 * 184.30574 * 14 13 3 17 17 C 1.76202 * 107.21719 * 297.84598 * 14 13 3 18 18 C 1.38288 * 119.94472 * 116.18246 * 17 14 13 19 19 C 1.38115 * 120.05578 * 179.72660 * 18 17 14 20 20 C 1.50705 * 120.02992 * 180.27814 * 19 18 17 21 21 C 1.38754 * 119.94547 * 0.54207 * 19 18 17 22 22 O 1.35899 * 120.05706 * 179.75148 * 21 19 18 23 23 C 1.42902 * 116.99788 * 179.97438 * 22 21 19 24 24 C 1.38711 * 119.88829 * 359.72789 * 21 19 18 25 25 C 1.38170 * 119.94022 * 0.02562 * 24 21 19 26 26 C 1.50707 * 119.97052 * 180.02562 * 25 24 21 27 27 H 1.08998 * 109.46952 * 56.51664 * 1 2 3 28 28 H 1.08995 * 109.47488 * 176.51647 * 1 2 3 29 29 H 1.09000 * 109.47221 * 296.52438 * 1 2 3 30 30 H 1.08996 * 109.46888 * 239.99815 * 2 1 3 31 31 H 1.09005 * 109.46711 * 119.99766 * 2 1 3 32 32 H 0.97007 * 119.99942 * 180.02562 * 8 7 5 33 33 H 0.97005 * 120.00433 * 63.78833 * 13 3 2 34 34 H 1.08004 * 119.96894 * 0.02562 * 18 17 14 35 35 H 1.09003 * 109.46690 * 270.26627 * 20 19 18 36 36 H 1.08997 * 109.47123 * 30.26573 * 20 19 18 37 37 H 1.08997 * 109.47560 * 150.27293 * 20 19 18 38 38 H 1.09001 * 109.47407 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.47406 * 299.99862 * 23 22 21 40 40 H 1.08996 * 109.47382 * 59.99926 * 23 22 21 41 41 H 1.07995 * 120.03295 * 179.97438 * 24 21 19 42 42 H 1.09005 * 109.46710 * 264.02057 * 26 25 24 43 43 H 1.08998 * 109.46852 * 24.01448 * 26 25 24 44 44 H 1.08996 * 109.47142 * 144.01751 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6099 1.9800 -0.8451 5 6 3.5425 1.4440 -0.1159 6 1 4.1437 1.8900 0.6626 7 6 4.1497 0.8761 -1.2158 8 7 3.4177 0.3325 -2.1635 9 14 6.0122 0.8773 -1.3591 10 1 6.5997 1.5447 -0.1698 11 1 6.5038 -0.5219 -1.4353 12 1 6.4137 1.6106 -2.5864 13 7 1.6459 2.0998 1.2485 14 16 0.6161 3.3962 1.2125 15 8 -0.5071 2.9951 0.4400 16 8 0.5124 3.8635 2.5504 17 6 1.4170 4.6732 0.3001 18 6 0.8735 5.1144 -0.8925 19 6 1.4964 6.1192 -1.6068 20 6 0.9002 6.6039 -2.9032 21 6 2.6744 6.6782 -1.1324 22 8 3.2919 7.6634 -1.8359 23 6 4.5005 8.1926 -1.2872 24 6 3.2206 6.2300 0.0612 25 6 2.5909 5.2281 0.7746 26 6 3.1834 4.7411 2.0718 27 1 -0.3633 0.5670 -0.8571 28 1 -0.3634 -1.0257 -0.0624 29 1 -0.3633 0.4589 0.9195 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8449 -0.0674 -2.9372 33 1 1.9913 1.7782 2.0960 34 1 -0.0414 4.6763 -1.2633 35 1 1.2983 6.0143 -3.7290 36 1 -0.1837 6.4945 -2.8680 37 1 1.1548 7.6535 -3.0503 38 1 4.8893 8.9691 -1.9459 39 1 4.2978 8.6176 -0.3041 40 1 5.2368 7.3945 -1.1930 41 1 4.1376 6.6631 0.4324 42 1 3.7852 3.8516 1.8851 43 1 3.8121 5.5218 2.4999 44 1 2.3815 4.4975 2.7687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186432312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:06 Heat of formation + Delta-G solvation = -102.370460 kcal Electronic energy + Delta-G solvation = -27562.697558 eV Core-core repulsion = 23800.034916 eV Total energy + Delta-G solvation = -3762.662641 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.25082 -37.62883 -36.75408 -35.88792 -35.24756 -33.66015 -32.21759 -30.50527 -30.28389 -29.05024 -27.67410 -26.63481 -24.68512 -22.98667 -22.53561 -21.31397 -20.07578 -18.80570 -17.53858 -17.26810 -16.68497 -16.57904 -16.11298 -15.85507 -15.23308 -14.61773 -14.41610 -13.93101 -13.72485 -13.63446 -13.31005 -13.12949 -12.93925 -12.82830 -12.74068 -12.46274 -11.94225 -11.85746 -11.81206 -11.70633 -11.67331 -11.40445 -11.23110 -11.16925 -10.90671 -10.87462 -10.83912 -10.82877 -10.41247 -10.16558 -9.95634 -9.65721 -9.44763 -8.64264 -8.51528 -8.21010 -8.13960 -6.13299 -4.21560 1.04914 1.28335 1.49751 3.18039 3.20194 3.29107 3.30453 3.56474 3.83847 4.33063 4.36059 4.70481 4.84028 4.96602 5.04424 5.10945 5.17005 5.24950 5.30786 5.40350 5.56660 5.68807 5.72720 5.83532 5.91846 5.95544 6.12978 6.26399 6.29369 6.38463 6.39785 6.42788 6.44166 6.55206 6.70432 6.86945 6.95516 7.15886 7.28943 7.35485 7.62146 7.68613 7.88979 8.02359 8.27397 8.81501 9.44793 10.91202 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.006461 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.144052 B = 4332.358455 C = 5703.724477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.128 4.128 3 C 0.282 3.718 4 H 0.046 0.954 5 C -0.526 4.526 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.884 5.884 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.285 1.285 13 N -1.100 6.100 14 S 2.696 3.304 15 O -0.966 6.966 16 O -0.985 6.985 17 C -0.696 4.696 18 C 0.021 3.979 19 C -0.147 4.147 20 C -0.101 4.101 21 C 0.177 3.823 22 O -0.312 6.312 23 C 0.025 3.975 24 C -0.231 4.231 25 C 0.069 3.931 26 C -0.172 4.172 27 H 0.051 0.949 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.263 0.737 33 H 0.407 0.593 34 H 0.147 0.853 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 11.428 2.544 11.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.178 3.822 4 H 0.064 0.936 5 C -0.565 4.565 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.522 5.522 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.860 5.860 14 S 2.785 3.215 15 O -0.956 6.956 16 O -0.976 6.976 17 C -0.783 4.783 18 C 0.001 3.999 19 C -0.149 4.149 20 C -0.158 4.158 21 C 0.130 3.870 22 O -0.225 6.225 23 C -0.071 4.071 24 C -0.250 4.250 25 C 0.068 3.932 26 C -0.228 4.228 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.240 0.760 34 H 0.164 0.836 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.093 0.907 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.930 11.561 2.362 11.836 hybrid contribution 2.225 0.172 -0.144 2.237 sum 1.295 11.733 2.218 12.011 Atomic orbital electron populations 1.21820 0.98446 0.99085 1.01001 1.21909 0.92482 0.99533 1.02826 1.18551 0.94689 0.89991 0.78994 0.93612 1.21446 0.91130 1.38067 1.05881 0.91857 1.24896 0.98166 0.95017 0.95612 1.69871 1.34893 1.37941 1.09509 0.86536 0.85634 0.77797 0.78000 1.19802 1.20901 1.21087 1.55478 1.67576 1.46277 1.16685 1.01604 0.73778 0.73139 0.72940 1.93543 1.48299 1.81516 1.72221 1.93467 1.86639 1.81648 1.35803 1.30649 1.11295 1.23754 1.12565 1.20636 0.97625 0.91277 0.90319 1.19235 0.95483 1.00385 0.99781 1.20580 1.00285 1.01325 0.93628 1.18985 0.91317 0.86865 0.89792 1.86059 1.38429 1.49730 1.48254 1.23099 0.85014 0.99009 0.99930 1.21092 1.03178 1.03552 0.97200 1.19177 0.89968 0.90144 0.93937 1.21627 1.03578 1.03356 0.94280 0.92967 0.94954 0.94425 0.87967 0.94330 0.92676 0.75957 0.83565 0.91200 0.91519 0.91460 0.88234 0.92545 0.92262 0.85060 0.88261 0.90749 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.11 37.16 0.34 -2.67 16 2 C -0.13 -2.88 5.45 -26.73 -0.15 -3.02 16 3 C 0.28 6.47 2.24 -69.08 -0.15 6.32 16 4 H 0.05 1.16 7.80 -51.93 -0.41 0.75 16 5 C -0.53 -12.98 8.84 -34.44 -0.30 -13.29 16 6 H 0.06 1.51 7.58 -52.49 -0.40 1.11 16 7 C 0.07 1.69 5.29 -17.82 -0.09 1.60 16 8 N -0.88 -23.58 11.29 55.43 0.63 -22.95 16 9 Si 0.89 20.10 29.54 -169.99 -5.02 15.08 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -1.10 -21.36 4.62 -5.88 -0.03 -21.39 16 14 S 2.70 51.78 4.88 -107.50 -0.52 51.26 16 15 O -0.97 -20.36 15.60 -57.17 -0.89 -21.25 16 16 O -0.99 -19.36 15.48 -57.17 -0.89 -20.24 16 17 C -0.70 -12.97 5.82 -39.56 -0.23 -13.20 16 18 C 0.02 0.37 9.20 -39.61 -0.36 0.00 16 19 C -0.15 -2.43 5.89 -104.47 -0.62 -3.04 16 20 C -0.10 -1.36 9.79 36.01 0.35 -1.01 16 21 C 0.18 2.82 6.66 -39.22 -0.26 2.56 16 22 O -0.31 -4.31 9.54 -19.42 -0.19 -4.50 16 23 C 0.02 0.24 9.81 101.05 0.99 1.23 16 24 C -0.23 -3.63 8.67 -39.43 -0.34 -3.98 16 25 C 0.07 1.20 5.87 -104.64 -0.61 0.58 16 26 C -0.17 -2.63 9.21 36.01 0.33 -2.30 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.74 7.38 -51.93 -0.38 0.36 16 30 H 0.10 2.56 5.96 -51.93 -0.31 2.25 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.41 6.99 8.96 -34.47 -0.31 6.68 16 34 H 0.15 2.44 7.33 -52.48 -0.38 2.06 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.07 0.82 7.53 -51.93 -0.39 0.43 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 40 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 41 H 0.13 1.67 6.30 -52.49 -0.33 1.34 16 42 H 0.10 1.55 7.91 -51.93 -0.41 1.14 16 43 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 44 H 0.10 1.63 5.16 -51.93 -0.27 1.36 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -30.39 366.52 -8.97 -39.36 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.47 Total: 9.33 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -1.11 Total: -30.22 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 0.60 Total: -44.34 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.96 Total: -45.99 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 16 Polarization: 51.78 SS G_CDS: -0.52 Total: 51.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.39 -8.97 -39.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186432312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.006 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds