Wall clock time and date at job start Tue Mar 31 2020 15:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47029 * 2 1 4 4 H 1.08997 * 109.47563 * 304.67567 * 3 2 1 5 5 C 1.50702 * 109.46950 * 184.67789 * 3 2 1 6 6 H 1.07998 * 120.00279 * 240.00472 * 5 3 2 7 7 C 1.37878 * 120.00000 * 60.00134 * 5 3 2 8 8 N 1.31515 * 119.99842 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00309 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47487 * 119.99367 * 9 7 5 12 12 H 1.48497 * 109.47223 * 239.99897 * 9 7 5 13 13 N 1.46499 * 109.47258 * 64.68265 * 3 2 1 14 14 S 1.65601 * 119.99796 * 243.51364 * 13 3 2 15 15 O 1.42101 * 106.40283 * 51.38550 * 14 13 3 16 16 O 1.42095 * 106.40269 * 184.30574 * 14 13 3 17 17 C 1.76202 * 107.21719 * 297.84598 * 14 13 3 18 18 C 1.38288 * 119.94472 * 116.18246 * 17 14 13 19 19 C 1.38115 * 120.05578 * 179.72660 * 18 17 14 20 20 C 1.50705 * 120.02992 * 180.27814 * 19 18 17 21 21 C 1.38754 * 119.94547 * 0.54207 * 19 18 17 22 22 O 1.35899 * 120.05706 * 179.75148 * 21 19 18 23 23 C 1.42902 * 116.99788 * 179.97438 * 22 21 19 24 24 C 1.38711 * 119.88829 * 359.72789 * 21 19 18 25 25 C 1.38170 * 119.94022 * 0.02562 * 24 21 19 26 26 C 1.50707 * 119.97052 * 180.02562 * 25 24 21 27 27 H 1.08998 * 109.46952 * 56.51664 * 1 2 3 28 28 H 1.08995 * 109.47488 * 176.51647 * 1 2 3 29 29 H 1.09000 * 109.47221 * 296.52438 * 1 2 3 30 30 H 1.08996 * 109.46888 * 239.99815 * 2 1 3 31 31 H 1.09005 * 109.46711 * 119.99766 * 2 1 3 32 32 H 0.97007 * 119.99942 * 180.02562 * 8 7 5 33 33 H 0.97005 * 120.00433 * 63.78833 * 13 3 2 34 34 H 1.08004 * 119.96894 * 0.02562 * 18 17 14 35 35 H 1.09003 * 109.46690 * 270.26627 * 20 19 18 36 36 H 1.08997 * 109.47123 * 30.26573 * 20 19 18 37 37 H 1.08997 * 109.47560 * 150.27293 * 20 19 18 38 38 H 1.09001 * 109.47407 * 179.97438 * 23 22 21 39 39 H 1.08999 * 109.47406 * 299.99862 * 23 22 21 40 40 H 1.08996 * 109.47382 * 59.99926 * 23 22 21 41 41 H 1.07995 * 120.03295 * 179.97438 * 24 21 19 42 42 H 1.09005 * 109.46710 * 264.02057 * 26 25 24 43 43 H 1.08998 * 109.46852 * 24.01448 * 26 25 24 44 44 H 1.08996 * 109.47142 * 144.01751 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6099 1.9800 -0.8451 5 6 3.5425 1.4440 -0.1159 6 1 4.1437 1.8900 0.6626 7 6 4.1497 0.8761 -1.2158 8 7 3.4177 0.3325 -2.1635 9 14 6.0122 0.8773 -1.3591 10 1 6.5997 1.5447 -0.1698 11 1 6.5038 -0.5219 -1.4353 12 1 6.4137 1.6106 -2.5864 13 7 1.6459 2.0998 1.2485 14 16 0.6161 3.3962 1.2125 15 8 -0.5071 2.9951 0.4400 16 8 0.5124 3.8635 2.5504 17 6 1.4170 4.6732 0.3001 18 6 0.8735 5.1144 -0.8925 19 6 1.4964 6.1192 -1.6068 20 6 0.9002 6.6039 -2.9032 21 6 2.6744 6.6782 -1.1324 22 8 3.2919 7.6634 -1.8359 23 6 4.5005 8.1926 -1.2872 24 6 3.2206 6.2300 0.0612 25 6 2.5909 5.2281 0.7746 26 6 3.1834 4.7411 2.0718 27 1 -0.3633 0.5670 -0.8571 28 1 -0.3634 -1.0257 -0.0624 29 1 -0.3633 0.4589 0.9195 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8449 -0.0674 -2.9372 33 1 1.9913 1.7782 2.0960 34 1 -0.0414 4.6763 -1.2633 35 1 1.2983 6.0143 -3.7290 36 1 -0.1837 6.4945 -2.8680 37 1 1.1548 7.6535 -3.0503 38 1 4.8893 8.9691 -1.9459 39 1 4.2978 8.6176 -0.3041 40 1 5.2368 7.3945 -1.1930 41 1 4.1376 6.6631 0.4324 42 1 3.7852 3.8516 1.8851 43 1 3.8121 5.5218 2.4999 44 1 2.3815 4.4975 2.7687 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186432312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:06 Heat of formation + Delta-G solvation = -121.682578 kcal Electronic energy + Delta-G solvation = -27563.534994 eV Core-core repulsion = 23800.034916 eV Total energy + Delta-G solvation = -3763.500078 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.40148 -38.77435 -38.34335 -37.62871 -36.84223 -34.87307 -34.09734 -32.20352 -31.52547 -30.20781 -28.53014 -28.50074 -25.87256 -24.82362 -23.74604 -22.56139 -21.86052 -20.34453 -18.97258 -18.61040 -18.21770 -17.96021 -17.61142 -16.98083 -16.83168 -16.24203 -15.59255 -15.47700 -14.98295 -14.92827 -14.83238 -14.69842 -14.34683 -14.13258 -13.93084 -13.66049 -13.49035 -13.40084 -13.09685 -13.08348 -13.04091 -12.81583 -12.80101 -12.64348 -12.62105 -12.49210 -12.09076 -12.05291 -11.98102 -11.79305 -11.60964 -11.47190 -11.24652 -10.46504 -9.96369 -9.84312 -9.37981 -8.07029 -6.20366 -0.41638 -0.07457 0.23084 1.42309 1.46126 1.54617 2.14958 2.17669 2.39626 2.49695 2.86446 3.21434 3.47266 3.63483 3.74532 4.01374 4.13473 4.29545 4.34727 4.43518 4.44929 4.53550 4.60740 4.65072 4.67511 4.71310 4.74284 4.75989 4.79029 4.95738 5.00785 5.01421 5.17896 5.22811 5.27640 5.31532 5.41183 5.51837 5.65669 5.72633 5.84455 6.12093 6.21344 6.25208 6.50726 6.90019 7.48578 8.96859 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.006461 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2887.144052 B = 4332.358455 C = 5703.724477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.290 3.710 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.070 0.930 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.948 3.052 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.289 1.289 13 N -1.095 6.095 14 S 2.709 3.291 15 O -0.990 6.990 16 O -0.990 6.990 17 C -0.717 4.717 18 C 0.000 4.000 19 C -0.161 4.161 20 C -0.100 4.100 21 C 0.176 3.824 22 O -0.318 6.318 23 C 0.012 3.988 24 C -0.234 4.234 25 C 0.053 3.947 26 C -0.172 4.172 27 H 0.036 0.964 28 H 0.053 0.947 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.262 0.738 33 H 0.417 0.583 34 H 0.145 0.855 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.163 0.837 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.596 12.885 3.159 13.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.185 3.815 4 H 0.036 0.964 5 C -0.569 4.569 6 H 0.089 0.911 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.775 3.225 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.216 1.216 13 N -0.856 5.856 14 S 2.801 3.199 15 O -0.980 6.980 16 O -0.981 6.981 17 C -0.806 4.806 18 C -0.020 4.020 19 C -0.163 4.163 20 C -0.156 4.156 21 C 0.129 3.871 22 O -0.231 6.231 23 C -0.082 4.082 24 C -0.253 4.253 25 C 0.052 3.948 26 C -0.228 4.228 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.252 0.748 34 H 0.163 0.837 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.146 0.854 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.181 0.819 42 H 0.112 0.888 43 H 0.124 0.876 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.660 13.008 3.016 13.370 hybrid contribution 1.761 -0.158 -0.359 1.804 sum 2.421 12.850 2.657 13.343 Atomic orbital electron populations 1.21740 0.97071 1.00278 1.00619 1.21811 0.93728 0.99069 1.01968 1.18233 0.93883 0.90020 0.79377 0.96423 1.21756 0.92073 1.37274 1.05802 0.91145 1.25587 1.01797 0.95064 0.95578 1.70001 1.36294 1.38918 1.09988 0.85656 0.81332 0.77601 0.77953 1.18599 1.20921 1.21553 1.55244 1.67518 1.46700 1.16116 1.01025 0.73289 0.73012 0.72602 1.93504 1.49730 1.82095 1.72676 1.93456 1.86775 1.81622 1.36207 1.30487 1.12627 1.24222 1.13289 1.20782 0.98166 0.92293 0.90716 1.19587 0.95978 1.00043 1.00666 1.20629 1.01032 1.01879 0.92083 1.19145 0.91133 0.87007 0.89858 1.86062 1.39783 1.48813 1.48409 1.23480 0.83420 0.99713 1.01577 1.21447 1.04022 1.02903 0.96892 1.19517 0.89742 0.90661 0.94925 1.21664 1.03622 1.04224 0.93320 0.94510 0.92805 0.93760 0.90460 0.93441 0.92886 0.74754 0.83745 0.91315 0.90241 0.90176 0.85437 0.90963 0.92034 0.81944 0.88753 0.87569 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 9.11 71.98 0.66 -5.11 16 2 C -0.13 -5.72 5.45 30.59 0.17 -5.55 16 3 C 0.29 13.49 2.24 44.24 0.10 13.59 16 4 H 0.02 0.94 7.80 -2.39 -0.02 0.92 16 5 C -0.53 -26.05 8.84 25.60 0.23 -25.82 16 6 H 0.07 3.29 7.58 -2.91 -0.02 3.27 16 7 C 0.02 1.01 5.29 84.65 0.45 1.45 16 8 N -0.91 -49.42 11.29 21.45 0.24 -49.18 16 9 Si 0.95 40.78 29.54 68.60 2.03 42.80 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 13 N -1.09 -42.61 4.62 -172.53 -0.80 -43.40 16 14 S 2.71 105.12 4.88 -56.49 -0.28 104.85 16 15 O -0.99 -42.77 15.60 -128.00 -2.00 -44.77 16 16 O -0.99 -38.72 15.48 -128.00 -1.98 -40.70 16 17 C -0.72 -26.89 5.82 22.28 0.13 -26.76 16 18 C 0.00 -0.01 9.20 22.25 0.20 0.20 16 19 C -0.16 -5.24 5.89 -19.77 -0.12 -5.36 16 20 C -0.10 -2.59 9.79 71.24 0.70 -1.89 16 21 C 0.18 5.34 6.66 22.51 0.15 5.49 16 22 O -0.32 -8.02 9.54 -92.42 -0.88 -8.91 16 23 C 0.01 0.19 9.81 113.37 1.11 1.30 16 24 C -0.23 -6.87 8.67 22.37 0.19 -6.68 16 25 C 0.05 1.78 5.87 -19.88 -0.12 1.66 16 26 C -0.17 -4.96 9.21 71.24 0.66 -4.31 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.04 1.73 7.38 -2.39 -0.02 1.72 16 30 H 0.08 3.95 5.96 -2.39 -0.01 3.93 16 31 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.26 13.60 8.31 -92.70 -0.77 12.83 16 33 H 0.42 14.16 8.96 -96.74 -0.87 13.30 16 34 H 0.14 5.06 7.33 -2.91 -0.02 5.04 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 37 H 0.08 1.84 7.53 -2.39 -0.02 1.82 16 38 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.07 0.95 7.66 -2.39 -0.02 0.93 16 40 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 41 H 0.16 3.57 6.30 -2.91 -0.02 3.56 16 42 H 0.09 2.80 7.91 -2.38 -0.02 2.78 16 43 H 0.11 2.30 8.04 -2.39 -0.02 2.28 16 44 H 0.09 2.89 5.16 -2.39 -0.01 2.87 16 Total: -1.00 -64.73 366.52 0.99 -63.74 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.15 Total: 33.35 kcal Atomic # 6 Polarization: -62.29 SS G_CDS: 4.51 Total: -57.78 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -0.55 Total: -92.58 kcal Atomic # 8 Polarization: -89.52 SS G_CDS: -4.86 Total: -94.38 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 16 Polarization: 105.12 SS G_CDS: -0.28 Total: 104.85 kcal Total: -64.73 0.99 -63.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186432312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.941 kcal (2) G-P(sol) polarization free energy of solvation -64.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds