Wall clock time and date at job start Tue Mar 31 2020 15:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47182 * 2 1 4 4 H 1.09004 * 109.47079 * 177.16612 * 3 2 1 5 5 C 1.50703 * 109.47271 * 297.16477 * 3 2 1 6 6 H 1.08007 * 119.99921 * 116.60565 * 5 3 2 7 7 C 1.37872 * 120.00238 * 296.60201 * 5 3 2 8 8 N 1.31513 * 119.99631 * 349.71841 * 7 5 3 9 9 Si 1.86802 * 120.00076 * 169.71009 * 7 5 3 10 10 H 1.48507 * 109.46991 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47227 * 300.00402 * 9 7 5 12 12 H 1.48496 * 109.47077 * 60.00434 * 9 7 5 13 13 N 1.46498 * 109.47284 * 57.16612 * 3 2 1 14 14 S 1.65606 * 120.00067 * 96.26225 * 13 3 2 15 15 O 1.42104 * 106.40035 * 176.72735 * 14 13 3 16 16 O 1.42100 * 106.40073 * 309.64974 * 14 13 3 17 17 C 1.76203 * 107.21592 * 63.18848 * 14 13 3 18 18 C 1.38270 * 119.94380 * 269.72713 * 17 14 13 19 19 C 1.38147 * 120.05067 * 179.72592 * 18 17 14 20 20 C 1.38729 * 119.94663 * 0.56933 * 19 18 17 21 21 O 1.35898 * 120.05595 * 179.68108 * 20 19 18 22 22 C 1.42902 * 116.99707 * 354.60528 * 21 20 19 23 23 C 1.53008 * 109.47205 * 84.51350 * 22 21 20 24 24 C 1.53005 * 109.46992 * 204.50799 * 22 21 20 25 25 C 1.38734 * 119.88750 * 359.70513 * 20 19 18 26 26 C 1.38141 * 119.94375 * 359.97438 * 25 20 19 27 27 H 1.08997 * 109.47808 * 184.94215 * 1 2 3 28 28 H 1.09004 * 109.47292 * 304.94728 * 1 2 3 29 29 H 1.09006 * 109.47106 * 64.94385 * 1 2 3 30 30 H 1.08998 * 109.46573 * 239.99882 * 2 1 3 31 31 H 1.09001 * 109.46790 * 120.00361 * 2 1 3 32 32 H 0.97001 * 120.00441 * 359.61549 * 8 7 5 33 33 H 0.97007 * 120.00459 * 276.26498 * 13 3 2 34 34 H 1.07996 * 119.96702 * 359.97438 * 18 17 14 35 35 H 1.08001 * 120.01947 * 180.24971 * 19 18 17 36 36 H 1.08994 * 109.47221 * 324.50908 * 22 21 20 37 37 H 1.08998 * 109.46939 * 59.99485 * 23 22 21 38 38 H 1.08993 * 109.46814 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.46372 * 299.99843 * 23 22 21 40 40 H 1.08996 * 109.47145 * 60.00028 * 24 22 21 41 41 H 1.09003 * 109.47104 * 180.02562 * 24 22 21 42 42 H 1.09002 * 109.46930 * 299.99967 * 24 22 21 43 43 H 1.08005 * 120.02407 * 179.97438 * 25 20 19 44 44 H 1.08005 * 119.96917 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1289 1.4428 0.0508 5 6 1.5959 2.1323 -1.2641 6 1 0.9270 2.9786 -1.2110 7 6 2.0435 1.6832 -2.4884 8 7 3.0080 0.7911 -2.5490 9 14 1.2799 2.3415 -4.0609 10 1 1.9324 1.7039 -5.2327 11 1 -0.1722 2.0310 -4.0739 12 1 1.4721 3.8125 -4.1264 13 7 1.4968 2.1525 1.1605 14 16 2.3949 2.2842 2.5457 15 8 1.6343 3.0818 3.4427 16 8 2.8423 0.9726 2.8599 17 6 3.8344 3.2188 2.1469 18 6 4.9791 2.5734 1.7168 19 6 6.1072 3.3044 1.3982 20 6 6.0947 4.6861 1.5214 21 8 7.2052 5.4069 1.2147 22 6 8.3856 4.6715 0.8861 23 6 8.3547 4.2933 -0.5962 24 6 9.6182 5.5334 1.1668 25 6 4.9467 5.3308 1.9586 26 6 3.8191 4.5959 2.2696 27 1 -0.3634 -1.0238 0.0885 28 1 -0.3634 0.5887 0.8424 29 1 -0.3633 0.4352 -0.9310 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.4082 0.4533 -1.7325 33 1 0.6109 2.5455 1.1177 34 1 4.9899 1.4973 1.6261 35 1 6.9997 2.8000 1.0584 36 1 8.4298 3.7660 1.4912 37 1 8.3104 5.1988 -1.2013 38 1 9.2548 3.7320 -0.8467 39 1 7.4766 3.6793 -0.7962 40 1 9.6402 5.8028 2.2227 41 1 10.5185 4.9726 0.9157 42 1 9.5739 6.4388 0.5616 43 1 4.9346 6.4064 2.0557 44 1 2.9250 5.0974 2.6096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186436792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:26 Heat of formation + Delta-G solvation = -103.932204 kcal Electronic energy + Delta-G solvation = -26744.024541 eV Core-core repulsion = 22981.294177 eV Total energy + Delta-G solvation = -3762.730364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38919 -37.74155 -36.84947 -36.21593 -35.34699 -33.48170 -32.27278 -30.99462 -30.45120 -29.93954 -27.51486 -25.92873 -23.78788 -23.60575 -22.86461 -21.07401 -20.18165 -18.97585 -18.45210 -17.59529 -17.18543 -16.64732 -16.15310 -15.63986 -15.01914 -14.87709 -14.18473 -13.99179 -13.91735 -13.72165 -13.46206 -13.31562 -13.23360 -13.05169 -12.76336 -12.67568 -12.56359 -12.44172 -12.08531 -11.64456 -11.56601 -11.38689 -11.35748 -11.15927 -11.02407 -10.87902 -10.76828 -10.64058 -10.44356 -10.28591 -10.17064 -9.96183 -9.10224 -8.98883 -8.50845 -8.38632 -8.27434 -6.48055 -4.19827 0.89374 1.15411 1.37995 2.96156 3.37402 3.39033 3.46442 3.57099 3.78022 4.28218 4.44138 4.49512 4.60734 4.69846 4.77435 4.86185 5.00597 5.22307 5.24055 5.29903 5.32084 5.45662 5.52141 5.57900 5.66262 5.79587 5.96504 5.98072 6.03793 6.06796 6.18756 6.25753 6.26225 6.33756 6.42626 6.69593 6.82641 6.99289 7.20616 7.26972 7.28452 7.39170 7.70031 8.08932 8.35119 8.70395 9.48147 10.88428 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.004904 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.903445 B = 5708.591443 C = 7447.840407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.140 4.140 3 C 0.269 3.731 4 H 0.031 0.969 5 C -0.601 4.601 6 H 0.058 0.942 7 C 0.029 3.971 8 N -0.903 5.903 9 Si 1.064 2.936 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.289 1.289 13 N -1.094 6.094 14 S 2.692 3.308 15 O -0.982 6.982 16 O -0.967 6.967 17 C -0.703 4.703 18 C 0.028 3.972 19 C -0.230 4.230 20 C 0.180 3.820 21 O -0.308 6.308 22 C 0.073 3.927 23 C -0.184 4.184 24 C -0.147 4.147 25 C -0.177 4.177 26 C 0.021 3.979 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.271 0.729 33 H 0.411 0.589 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.136 0.864 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.879 6.831 6.443 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.179 4.179 3 C 0.164 3.836 4 H 0.049 0.951 5 C -0.640 4.640 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.539 5.539 9 Si 0.892 3.108 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.854 5.854 14 S 2.782 3.218 15 O -0.973 6.973 16 O -0.957 6.957 17 C -0.789 4.789 18 C 0.008 3.992 19 C -0.250 4.250 20 C 0.134 3.866 21 O -0.221 6.221 22 C 0.017 3.983 23 C -0.241 4.241 24 C -0.204 4.204 25 C -0.196 4.196 26 C 0.001 3.999 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.245 0.755 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.154 0.846 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 8.992 6.504 5.594 12.428 hybrid contribution 0.175 0.515 0.974 1.116 sum 9.167 7.019 6.569 13.283 Atomic orbital electron populations 1.21512 0.96777 0.98688 1.01604 1.22029 0.96254 0.99031 1.00635 1.18597 0.92930 0.88514 0.83557 0.95139 1.21990 1.33184 1.17613 0.91204 0.92375 1.25689 0.94897 0.95486 1.01656 1.70819 1.21691 1.29072 1.32301 0.83607 0.75885 0.75717 0.75581 1.20794 1.21254 1.21528 1.55359 1.28539 1.70117 1.31413 1.01717 0.73338 0.73775 0.73007 1.93517 1.69851 1.71204 1.62693 1.93551 1.82510 1.36692 1.82956 1.30908 1.19866 1.07452 1.20694 1.20734 0.90303 1.00204 0.87928 1.21347 1.00917 0.93059 1.09630 1.19211 0.86704 0.90303 0.90376 1.86127 1.17909 1.36059 1.82042 1.22536 0.83608 0.95494 0.96619 1.22422 1.03503 1.02959 0.95262 1.21853 0.95149 1.00588 1.02845 1.20467 0.91698 1.00633 1.06814 1.20667 0.97443 0.91588 0.90163 0.95217 0.94228 0.91962 0.90896 0.94110 0.91765 0.75458 0.84100 0.84597 0.90602 0.91274 0.90807 0.91162 0.91685 0.90382 0.91382 0.84585 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.50 37.16 0.35 -2.24 16 2 C -0.14 -3.13 5.58 -26.73 -0.15 -3.28 16 3 C 0.27 6.15 2.10 -69.09 -0.15 6.00 16 4 H 0.03 0.73 6.45 -51.93 -0.34 0.40 16 5 C -0.60 -15.07 7.67 -34.44 -0.26 -15.33 16 6 H 0.06 1.45 7.84 -52.48 -0.41 1.04 16 7 C 0.03 0.74 5.16 -17.82 -0.09 0.65 16 8 N -0.90 -24.89 12.90 55.43 0.72 -24.17 16 9 Si 1.06 23.58 29.92 -169.99 -5.09 18.50 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.09 7.11 56.52 0.40 -5.68 16 12 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 13 N -1.09 -21.59 4.66 -5.88 -0.03 -21.62 16 14 S 2.69 50.69 5.65 -107.50 -0.61 50.08 16 15 O -0.98 -19.30 17.28 -57.17 -0.99 -20.29 16 16 O -0.97 -20.20 16.75 -57.17 -0.96 -21.16 16 17 C -0.70 -12.38 5.74 -39.56 -0.23 -12.61 16 18 C 0.03 0.47 8.82 -39.60 -0.35 0.12 16 19 C -0.23 -3.49 8.22 -39.43 -0.32 -3.81 16 20 C 0.18 2.69 6.60 -39.22 -0.26 2.43 16 21 O -0.31 -4.10 9.80 -19.42 -0.19 -4.29 16 22 C 0.07 0.76 2.85 -26.72 -0.08 0.68 16 23 C -0.18 -1.89 9.16 37.16 0.34 -1.55 16 24 C -0.15 -1.14 9.56 37.16 0.36 -0.79 16 25 C -0.18 -2.61 9.99 -39.43 -0.39 -3.01 16 26 C 0.02 0.33 9.51 -39.61 -0.38 -0.05 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.04 0.73 7.09 -51.93 -0.37 0.37 16 29 H 0.06 1.32 7.48 -51.93 -0.39 0.93 16 30 H 0.07 1.76 6.29 -51.93 -0.33 1.44 16 31 H 0.04 0.89 7.82 -51.93 -0.41 0.48 16 32 H 0.27 7.40 6.15 -40.82 -0.25 7.14 16 33 H 0.41 7.47 8.42 -34.47 -0.29 7.18 16 34 H 0.14 2.33 7.60 -52.49 -0.40 1.93 16 35 H 0.14 1.72 5.41 -52.49 -0.28 1.44 16 36 H 0.08 0.73 6.34 -51.93 -0.33 0.40 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.86 6.86 -51.93 -0.36 0.51 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.14 2.02 7.61 -52.48 -0.40 1.62 16 LS Contribution 367.03 15.07 5.53 5.53 Total: -1.00 -31.23 367.03 -9.52 -40.75 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.30 Total: 9.44 kcal Atomic # 6 Polarization: -31.16 SS G_CDS: -1.61 Total: -32.77 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.69 Total: -45.79 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -2.14 Total: -45.73 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.09 Total: 18.50 kcal Atomic # 16 Polarization: 50.69 SS G_CDS: -0.61 Total: 50.08 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.23 -9.52 -40.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.186 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds