Wall clock time and date at job start Tue Mar 31 2020 15:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47182 * 2 1 4 4 H 1.09004 * 109.47079 * 177.16612 * 3 2 1 5 5 C 1.50703 * 109.47271 * 297.16477 * 3 2 1 6 6 H 1.08007 * 119.99921 * 116.60565 * 5 3 2 7 7 C 1.37872 * 120.00238 * 296.60201 * 5 3 2 8 8 N 1.31513 * 119.99631 * 349.71841 * 7 5 3 9 9 Si 1.86802 * 120.00076 * 169.71009 * 7 5 3 10 10 H 1.48507 * 109.46991 * 180.02562 * 9 7 5 11 11 H 1.48496 * 109.47227 * 300.00402 * 9 7 5 12 12 H 1.48496 * 109.47077 * 60.00434 * 9 7 5 13 13 N 1.46498 * 109.47284 * 57.16612 * 3 2 1 14 14 S 1.65606 * 120.00067 * 96.26225 * 13 3 2 15 15 O 1.42104 * 106.40035 * 176.72735 * 14 13 3 16 16 O 1.42100 * 106.40073 * 309.64974 * 14 13 3 17 17 C 1.76203 * 107.21592 * 63.18848 * 14 13 3 18 18 C 1.38270 * 119.94380 * 269.72713 * 17 14 13 19 19 C 1.38147 * 120.05067 * 179.72592 * 18 17 14 20 20 C 1.38729 * 119.94663 * 0.56933 * 19 18 17 21 21 O 1.35898 * 120.05595 * 179.68108 * 20 19 18 22 22 C 1.42902 * 116.99707 * 354.60528 * 21 20 19 23 23 C 1.53008 * 109.47205 * 84.51350 * 22 21 20 24 24 C 1.53005 * 109.46992 * 204.50799 * 22 21 20 25 25 C 1.38734 * 119.88750 * 359.70513 * 20 19 18 26 26 C 1.38141 * 119.94375 * 359.97438 * 25 20 19 27 27 H 1.08997 * 109.47808 * 184.94215 * 1 2 3 28 28 H 1.09004 * 109.47292 * 304.94728 * 1 2 3 29 29 H 1.09006 * 109.47106 * 64.94385 * 1 2 3 30 30 H 1.08998 * 109.46573 * 239.99882 * 2 1 3 31 31 H 1.09001 * 109.46790 * 120.00361 * 2 1 3 32 32 H 0.97001 * 120.00441 * 359.61549 * 8 7 5 33 33 H 0.97007 * 120.00459 * 276.26498 * 13 3 2 34 34 H 1.07996 * 119.96702 * 359.97438 * 18 17 14 35 35 H 1.08001 * 120.01947 * 180.24971 * 19 18 17 36 36 H 1.08994 * 109.47221 * 324.50908 * 22 21 20 37 37 H 1.08998 * 109.46939 * 59.99485 * 23 22 21 38 38 H 1.08993 * 109.46814 * 180.02562 * 23 22 21 39 39 H 1.09000 * 109.46372 * 299.99843 * 23 22 21 40 40 H 1.08996 * 109.47145 * 60.00028 * 24 22 21 41 41 H 1.09003 * 109.47104 * 180.02562 * 24 22 21 42 42 H 1.09002 * 109.46930 * 299.99967 * 24 22 21 43 43 H 1.08005 * 120.02407 * 179.97438 * 25 20 19 44 44 H 1.08005 * 119.96917 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1289 1.4428 0.0508 5 6 1.5959 2.1323 -1.2641 6 1 0.9270 2.9786 -1.2110 7 6 2.0435 1.6832 -2.4884 8 7 3.0080 0.7911 -2.5490 9 14 1.2799 2.3415 -4.0609 10 1 1.9324 1.7039 -5.2327 11 1 -0.1722 2.0310 -4.0739 12 1 1.4721 3.8125 -4.1264 13 7 1.4968 2.1525 1.1605 14 16 2.3949 2.2842 2.5457 15 8 1.6343 3.0818 3.4427 16 8 2.8423 0.9726 2.8599 17 6 3.8344 3.2188 2.1469 18 6 4.9791 2.5734 1.7168 19 6 6.1072 3.3044 1.3982 20 6 6.0947 4.6861 1.5214 21 8 7.2052 5.4069 1.2147 22 6 8.3856 4.6715 0.8861 23 6 8.3547 4.2933 -0.5962 24 6 9.6182 5.5334 1.1668 25 6 4.9467 5.3308 1.9586 26 6 3.8191 4.5959 2.2696 27 1 -0.3634 -1.0238 0.0885 28 1 -0.3634 0.5887 0.8424 29 1 -0.3633 0.4352 -0.9310 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.4082 0.4533 -1.7325 33 1 0.6109 2.5455 1.1177 34 1 4.9899 1.4973 1.6261 35 1 6.9997 2.8000 1.0584 36 1 8.4298 3.7660 1.4912 37 1 8.3104 5.1988 -1.2013 38 1 9.2548 3.7320 -0.8467 39 1 7.4766 3.6793 -0.7962 40 1 9.6402 5.8028 2.2227 41 1 10.5185 4.9726 0.9157 42 1 9.5739 6.4388 0.5616 43 1 4.9346 6.4064 2.0557 44 1 2.9250 5.0974 2.6096 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186436792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:25 Heat of formation + Delta-G solvation = -123.947190 kcal Electronic energy + Delta-G solvation = -26744.892456 eV Core-core repulsion = 22981.294177 eV Total energy + Delta-G solvation = -3763.598279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.47540 -38.86944 -38.48461 -37.94440 -36.93661 -34.35335 -34.16097 -32.19204 -32.15722 -31.13941 -28.23519 -27.79490 -25.60232 -24.75023 -24.09869 -22.03625 -21.97089 -20.43573 -19.58557 -19.38345 -18.65025 -18.22000 -17.34698 -16.67383 -16.48794 -16.01615 -15.74619 -15.45836 -15.28636 -15.14461 -14.98320 -14.84406 -14.53481 -14.48090 -14.20784 -13.79400 -13.40613 -13.25516 -13.23834 -13.21618 -13.13223 -12.97213 -12.84645 -12.61623 -12.32095 -12.28024 -12.07281 -12.00226 -11.92876 -11.86885 -11.73079 -11.71322 -10.89036 -10.36273 -10.22027 -10.06318 -9.68146 -8.53058 -6.24549 -0.54882 -0.17907 0.15687 1.59312 1.64655 1.82943 1.97190 2.07607 2.39152 2.61998 2.80174 3.24835 3.32661 3.57116 3.70859 3.77334 3.89823 4.05133 4.10965 4.21863 4.28488 4.38395 4.46884 4.61036 4.62514 4.68379 4.71198 4.71869 4.78605 4.82773 4.93141 4.99655 5.03660 5.10452 5.17691 5.23419 5.26776 5.39432 5.51933 5.53788 5.61003 5.94180 6.21260 6.25419 6.42842 6.66062 7.50068 8.83912 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.010528 B = 0.004904 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.903445 B = 5708.591443 C = 7447.840407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.139 4.139 3 C 0.272 3.728 4 H 0.017 0.983 5 C -0.601 4.601 6 H 0.059 0.941 7 C -0.015 4.015 8 N -0.929 5.929 9 Si 1.104 2.896 10 H -0.290 1.290 11 H -0.271 1.271 12 H -0.277 1.277 13 N -1.093 6.093 14 S 2.709 3.291 15 O -0.989 6.989 16 O -0.992 6.992 17 C -0.719 4.719 18 C 0.007 3.993 19 C -0.232 4.232 20 C 0.182 3.818 21 O -0.311 6.311 22 C 0.063 3.937 23 C -0.183 4.183 24 C -0.142 4.142 25 C -0.179 4.179 26 C 0.012 3.988 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.041 0.959 32 H 0.261 0.739 33 H 0.418 0.582 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.067 0.933 43 H 0.163 0.837 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.384 8.317 6.448 14.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.179 4.179 3 C 0.166 3.834 4 H 0.034 0.966 5 C -0.640 4.640 6 H 0.077 0.923 7 C -0.216 4.216 8 N -0.566 5.566 9 Si 0.927 3.073 10 H -0.216 1.216 11 H -0.196 1.196 12 H -0.202 1.202 13 N -0.854 5.854 14 S 2.801 3.199 15 O -0.980 6.980 16 O -0.982 6.982 17 C -0.808 4.808 18 C -0.012 4.012 19 C -0.252 4.252 20 C 0.134 3.866 21 O -0.225 6.225 22 C 0.008 3.992 23 C -0.240 4.240 24 C -0.199 4.199 25 C -0.198 4.198 26 C -0.007 4.007 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.253 0.747 34 H 0.153 0.847 35 H 0.174 0.826 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.086 0.914 43 H 0.181 0.819 44 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.462 7.986 5.625 13.600 hybrid contribution 0.146 0.112 1.012 1.028 sum 9.608 8.098 6.637 14.210 Atomic orbital electron populations 1.21477 0.94950 1.00226 1.01576 1.21975 0.97911 0.98448 0.99530 1.18374 0.92223 0.88922 0.83853 0.96582 1.22236 1.32392 1.17338 0.92028 0.92315 1.26821 0.94769 0.95331 1.04645 1.70910 1.23178 1.30675 1.31835 0.83080 0.75957 0.75785 0.72439 1.21577 1.19601 1.20240 1.55211 1.29268 1.70195 1.30677 1.01020 0.73270 0.73221 0.72394 1.93498 1.70497 1.71192 1.62777 1.93512 1.82869 1.38471 1.83330 1.30638 1.19182 1.08211 1.22765 1.20840 0.91109 1.00298 0.88978 1.21564 1.01032 0.93503 1.09055 1.19374 0.87438 0.90245 0.89505 1.86146 1.18207 1.36558 1.81546 1.22886 0.83347 0.96351 0.96652 1.22427 1.03517 1.02749 0.95331 1.21877 0.94520 1.00456 1.03074 1.20801 0.91152 1.01984 1.05854 1.20940 0.98659 0.90976 0.90130 0.93236 0.92797 0.93094 0.93115 0.94041 0.92811 0.74656 0.84674 0.82650 0.89908 0.91436 0.88450 0.93619 0.91406 0.88074 0.91359 0.81932 0.82264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.95 9.50 71.98 0.68 -4.26 16 2 C -0.14 -6.28 5.58 30.59 0.17 -6.11 16 3 C 0.27 12.59 2.10 44.24 0.09 12.68 16 4 H 0.02 0.81 6.45 -2.38 -0.02 0.79 16 5 C -0.60 -30.10 7.67 25.60 0.20 -29.90 16 6 H 0.06 2.88 7.84 -2.91 -0.02 2.86 16 7 C -0.02 -0.79 5.16 84.65 0.44 -0.35 16 8 N -0.93 -52.04 12.90 21.45 0.28 -51.76 16 9 Si 1.10 47.02 29.92 68.60 2.05 49.07 16 10 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 12 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 13 N -1.09 -43.07 4.66 -172.53 -0.80 -43.87 16 14 S 2.71 102.25 5.65 -56.49 -0.32 101.93 16 15 O -0.99 -38.27 17.28 -128.00 -2.21 -40.48 16 16 O -0.99 -42.07 16.75 -128.00 -2.14 -44.21 16 17 C -0.72 -25.34 5.74 22.28 0.13 -25.22 16 18 C 0.01 0.25 8.82 22.26 0.20 0.45 16 19 C -0.23 -6.94 8.22 22.37 0.18 -6.75 16 20 C 0.18 5.19 6.60 22.51 0.15 5.34 16 21 O -0.31 -7.73 9.80 -92.40 -0.91 -8.64 16 22 C 0.06 1.17 2.85 30.60 0.09 1.26 16 23 C -0.18 -3.48 9.16 71.98 0.66 -2.82 16 24 C -0.14 -1.83 9.56 71.98 0.69 -1.14 16 25 C -0.18 -4.99 9.99 22.37 0.22 -4.77 16 26 C 0.01 0.38 9.51 22.25 0.21 0.59 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.05 1.94 7.09 -2.38 -0.02 1.93 16 29 H 0.05 2.11 7.48 -2.38 -0.02 2.09 16 30 H 0.05 2.51 6.29 -2.39 -0.02 2.49 16 31 H 0.04 1.83 7.82 -2.39 -0.02 1.81 16 32 H 0.26 14.74 6.15 -92.71 -0.57 14.17 16 33 H 0.42 14.94 8.42 -96.74 -0.81 14.13 16 34 H 0.14 4.69 7.60 -2.91 -0.02 4.67 16 35 H 0.16 3.85 5.41 -2.91 -0.02 3.83 16 36 H 0.08 1.44 6.34 -2.39 -0.02 1.42 16 37 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 39 H 0.04 1.09 6.86 -2.39 -0.02 1.08 16 40 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 44 H 0.16 4.26 7.61 -2.91 -0.02 4.24 16 Total: -1.00 -65.97 367.03 0.45 -65.52 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.40 Total: 33.47 kcal Atomic # 6 Polarization: -65.13 SS G_CDS: 4.11 Total: -61.02 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -0.53 Total: -95.63 kcal Atomic # 8 Polarization: -88.07 SS G_CDS: -5.26 Total: -93.33 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.05 Total: 49.07 kcal Atomic # 16 Polarization: 102.25 SS G_CDS: -0.32 Total: 101.93 kcal Total: -65.97 0.45 -65.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.431 kcal (2) G-P(sol) polarization free energy of solvation -65.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds