Wall clock time and date at job start Tue Mar 31 2020 15:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.08999 * 109.47238 * 304.62655 * 3 2 1 5 5 C 1.50700 * 109.46681 * 184.62538 * 3 2 1 6 6 H 1.07997 * 119.99735 * 239.71960 * 5 3 2 7 7 C 1.37869 * 120.00113 * 60.00222 * 5 3 2 8 8 N 1.31515 * 120.00324 * 359.72249 * 7 5 3 9 9 Si 1.86808 * 119.99896 * 179.72143 * 7 5 3 10 10 H 1.48500 * 109.46922 * 90.00188 * 9 7 5 11 11 H 1.48506 * 109.46886 * 209.99547 * 9 7 5 12 12 H 1.48489 * 109.47189 * 329.99671 * 9 7 5 13 13 N 1.46505 * 109.47225 * 64.62668 * 3 2 1 14 14 S 1.65594 * 119.99639 * 216.66384 * 13 3 2 15 15 O 1.42100 * 106.40390 * 179.32907 * 14 13 3 16 16 O 1.42100 * 106.40431 * 312.24834 * 14 13 3 17 17 C 1.76201 * 107.22162 * 65.79195 * 14 13 3 18 18 C 1.38271 * 119.94206 * 274.23720 * 17 14 13 19 19 C 1.38147 * 120.05437 * 179.72374 * 18 17 14 20 20 C 1.38727 * 119.94323 * 0.56968 * 19 18 17 21 21 O 1.35902 * 120.05408 * 179.68363 * 20 19 18 22 22 C 1.42899 * 116.99781 * 185.35496 * 21 20 19 23 23 C 1.53004 * 109.47169 * 155.07427 * 22 21 20 24 24 C 1.53009 * 109.47083 * 275.07002 * 22 21 20 25 25 C 1.38729 * 119.88890 * 359.70195 * 20 19 18 26 26 C 1.38141 * 119.94708 * 0.02562 * 25 20 19 27 27 H 1.09003 * 109.46756 * 64.85863 * 1 2 3 28 28 H 1.08991 * 109.47238 * 184.85777 * 1 2 3 29 29 H 1.09007 * 109.47216 * 304.85941 * 1 2 3 30 30 H 1.08996 * 109.47154 * 239.99936 * 2 1 3 31 31 H 1.08998 * 109.46942 * 119.99399 * 2 1 3 32 32 H 0.97002 * 120.00554 * 180.02562 * 8 7 5 33 33 H 0.96997 * 120.00024 * 36.65810 * 13 3 2 34 34 H 1.08004 * 119.97051 * 359.97438 * 18 17 14 35 35 H 1.07998 * 120.02560 * 180.24956 * 19 18 17 36 36 H 1.08992 * 109.47605 * 35.06799 * 22 21 20 37 37 H 1.08995 * 109.47381 * 59.99768 * 23 22 21 38 38 H 1.08994 * 109.46943 * 179.97438 * 23 22 21 39 39 H 1.08997 * 109.46700 * 299.99714 * 23 22 21 40 40 H 1.09000 * 109.46744 * 59.99885 * 24 22 21 41 41 H 1.08995 * 109.46996 * 180.02562 * 24 22 21 42 42 H 1.09001 * 109.46752 * 300.00598 * 24 22 21 43 43 H 1.08002 * 120.02630 * 179.97438 * 25 20 19 44 44 H 1.08000 * 119.97897 * 179.97438 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 -0.8456 5 6 3.5426 1.4440 -0.1146 6 1 4.1429 1.8942 0.6621 7 6 4.1508 0.8757 -1.2137 8 7 3.4198 0.3275 -2.1596 9 14 6.0131 0.8845 -1.3594 10 1 6.5646 -0.3425 -0.7304 11 1 6.3972 0.9210 -2.7935 12 1 6.5579 2.0817 -0.6704 13 7 1.6448 2.1003 1.2480 14 16 1.2083 3.6976 1.2398 15 8 0.8701 4.0281 2.5798 16 8 2.2087 4.3831 0.4991 17 6 -0.2795 3.8271 0.3049 18 6 -0.2212 3.9602 -1.0702 19 6 -1.3864 4.0561 -1.8061 20 6 -2.6155 4.0309 -1.1631 21 8 -3.7630 4.1316 -1.8842 22 6 -4.9856 4.2169 -1.1494 23 6 -6.0438 4.9223 -1.9999 24 6 -5.4692 2.8082 -0.7987 25 6 -2.6711 3.9030 0.2171 26 6 -1.5033 3.8017 0.9479 27 1 -0.3633 0.4366 -0.9303 28 1 -0.3633 -1.0239 0.0870 29 1 -0.3634 0.5874 0.8433 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8476 -0.0727 -2.9327 33 1 1.6386 1.6000 2.0790 34 1 0.7360 3.9850 -1.5697 35 1 -1.3404 4.1560 -2.8804 36 1 -4.8198 4.7827 -0.2327 37 1 -6.2096 4.3565 -2.9166 38 1 -6.9764 4.9870 -1.4396 39 1 -5.6993 5.9258 -2.2497 40 1 -4.7153 2.3056 -0.1928 41 1 -6.4020 2.8732 -0.2386 42 1 -5.6349 2.2423 -1.7155 43 1 -3.6268 3.8835 0.7200 44 1 -1.5460 3.7025 2.0225 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186436806.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:29 Heat of formation + Delta-G solvation = -120.330277 kcal Electronic energy + Delta-G solvation = -26703.791774 eV Core-core repulsion = 22940.350336 eV Total energy + Delta-G solvation = -3763.441438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.42183 -38.81983 -38.23722 -37.62632 -36.78623 -34.28860 -34.11286 -32.20296 -32.12307 -31.07077 -28.49738 -28.17600 -24.85921 -24.66852 -24.02903 -22.01637 -21.83265 -20.43974 -19.54822 -18.71144 -18.67876 -17.87369 -17.35663 -16.88654 -16.52358 -16.26697 -15.93146 -15.50414 -15.09995 -14.91401 -14.83583 -14.64890 -14.40886 -14.19009 -13.75207 -13.55103 -13.33638 -13.32615 -13.18962 -13.09836 -13.00801 -12.98748 -12.88437 -12.68770 -12.57000 -12.25267 -12.08598 -12.01525 -11.81312 -11.63825 -11.58656 -11.52338 -11.37885 -10.42458 -10.16463 -9.98190 -9.62161 -8.07274 -6.19514 -0.43842 -0.11221 0.21845 1.42842 1.45603 1.55619 2.03626 2.20322 2.46761 2.53473 2.92042 3.19144 3.45242 3.65902 3.79585 3.84667 3.96729 4.11938 4.19122 4.28864 4.45781 4.50893 4.63121 4.68038 4.72136 4.73397 4.79896 4.86332 4.87810 4.90892 4.99140 5.06157 5.10896 5.16344 5.24820 5.28121 5.37322 5.43336 5.58290 5.71104 5.83725 6.05766 6.29708 6.31576 6.50084 6.86877 7.48570 8.94678 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.016693 B = 0.003767 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.949727 B = 7430.224324 C = 7994.358314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.286 3.714 4 H 0.027 0.973 5 C -0.541 4.541 6 H 0.049 0.951 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.279 1.279 13 N -1.099 6.099 14 S 2.704 3.296 15 O -0.994 6.994 16 O -0.994 6.994 17 C -0.714 4.714 18 C 0.011 3.989 19 C -0.182 4.182 20 C 0.185 3.815 21 O -0.316 6.316 22 C 0.061 3.939 23 C -0.146 4.146 24 C -0.181 4.181 25 C -0.226 4.226 26 C 0.016 3.984 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.416 0.584 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.098 0.902 42 H 0.062 0.938 43 H 0.169 0.831 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.469 4.641 2.753 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.181 3.819 4 H 0.044 0.956 5 C -0.581 4.581 6 H 0.068 0.932 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.205 1.205 13 N -0.859 5.859 14 S 2.796 3.204 15 O -0.984 6.984 16 O -0.985 6.985 17 C -0.803 4.803 18 C -0.009 4.009 19 C -0.202 4.202 20 C 0.138 3.862 21 O -0.230 6.230 22 C 0.006 3.994 23 C -0.203 4.203 24 C -0.238 4.238 25 C -0.245 4.245 26 C -0.003 4.003 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.186 0.814 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -20.044 5.344 2.593 20.905 hybrid contribution 0.877 -0.539 -0.349 1.087 sum -19.167 4.804 2.244 19.887 Atomic orbital electron populations 1.21724 0.96257 1.00956 1.00645 1.21711 0.94372 0.97891 1.02110 1.18289 0.92812 0.91062 0.79720 0.95558 1.21848 0.93326 1.36980 1.05902 0.93237 1.25500 1.01864 0.94994 0.95383 1.69931 1.36122 1.38805 1.09958 0.85757 0.81502 0.78330 0.77276 1.19669 1.20657 1.20465 1.55291 1.82865 1.30252 1.17538 1.01091 0.73874 0.72874 0.72549 1.93477 1.85525 1.83493 1.35931 1.93541 1.57671 1.73199 1.74044 1.30587 1.19154 1.23168 1.07426 1.20787 0.99066 0.89098 0.91935 1.20659 0.89561 1.08437 1.01519 1.19284 0.86478 0.89704 0.90751 1.86172 1.13491 1.86383 1.36905 1.22925 0.81736 0.98402 0.96367 1.21894 0.97377 1.00362 1.00664 1.22417 1.03038 0.95475 1.02874 1.21618 1.00456 1.09769 0.92679 1.20944 0.89830 0.88659 1.00897 0.94558 0.92577 0.92549 0.90414 0.93641 0.92674 0.74931 0.85122 0.83480 0.89364 0.91710 0.87898 0.91915 0.92415 0.88336 0.91875 0.81358 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.85 9.85 71.98 0.71 -4.14 16 2 C -0.12 -5.23 5.38 30.60 0.16 -5.06 16 3 C 0.29 13.49 2.16 44.24 0.10 13.59 16 4 H 0.03 1.34 6.88 -2.39 -0.02 1.32 16 5 C -0.54 -29.45 8.84 25.60 0.23 -29.22 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.02 1.22 5.30 84.65 0.45 1.67 16 8 N -0.91 -49.91 11.28 21.44 0.24 -49.66 16 9 Si 0.95 43.95 29.54 68.60 2.03 45.98 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 13 N -1.10 -43.77 4.80 -172.51 -0.83 -44.60 16 14 S 2.70 106.52 5.64 -56.49 -0.32 106.20 16 15 O -0.99 -39.07 17.17 -128.00 -2.20 -41.27 16 16 O -0.99 -47.74 17.13 -128.00 -2.19 -49.93 16 17 C -0.71 -24.12 5.90 22.28 0.13 -23.99 16 18 C 0.01 0.37 8.74 22.26 0.19 0.56 16 19 C -0.18 -5.40 9.99 22.36 0.22 -5.18 16 20 C 0.19 4.76 6.60 22.50 0.15 4.90 16 21 O -0.32 -7.06 9.80 -92.45 -0.91 -7.97 16 22 C 0.06 0.87 2.85 30.60 0.09 0.96 16 23 C -0.15 -1.53 9.56 71.98 0.69 -0.85 16 24 C -0.18 -2.25 9.17 71.99 0.66 -1.59 16 25 C -0.23 -5.20 8.24 22.36 0.18 -5.02 16 26 C 0.02 0.44 9.52 22.25 0.21 0.65 16 27 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.06 1.76 7.61 -2.38 -0.02 1.74 16 30 H 0.08 3.84 5.95 -2.39 -0.01 3.83 16 31 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 33 H 0.42 14.36 8.85 -96.75 -0.86 13.50 16 34 H 0.13 4.91 7.48 -2.91 -0.02 4.89 16 35 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.09 1.07 6.31 -2.39 -0.02 1.05 16 37 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.84 6.92 -2.39 -0.02 0.82 16 41 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.17 2.63 5.43 -2.91 -0.02 2.61 16 44 H 0.16 3.67 7.52 -2.91 -0.02 3.65 16 Total: -1.00 -68.61 371.06 0.15 -68.46 By element: Atomic # 1 Polarization: 25.36 SS G_CDS: 0.15 Total: 25.51 kcal Atomic # 6 Polarization: -56.89 SS G_CDS: 4.17 Total: -52.72 kcal Atomic # 7 Polarization: -93.68 SS G_CDS: -0.59 Total: -94.26 kcal Atomic # 8 Polarization: -93.87 SS G_CDS: -5.30 Total: -99.17 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: 106.52 SS G_CDS: -0.32 Total: 106.20 kcal Total: -68.61 0.15 -68.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186436806.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.875 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds