Wall clock time and date at job start Tue Mar 31 2020 14:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46946 * 2 1 4 4 O 1.42898 * 109.47298 * 240.00404 * 2 1 3 5 5 C 1.50696 * 109.47207 * 119.99724 * 2 1 3 6 6 C 1.38238 * 119.99728 * 150.00400 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 S 1.65596 * 120.00034 * 164.99846 * 10 9 8 12 12 O 1.42097 * 104.27822 * 181.07072 * 11 10 9 13 13 O 1.42107 * 104.27703 * 308.92806 * 11 10 9 14 14 C 1.81393 * 104.45000 * 64.99722 * 11 10 9 15 15 C 1.53006 * 109.47382 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.47061 * 180.02562 * 15 14 11 17 17 H 1.07989 * 120.00316 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99553 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99973 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99708 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47544 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47280 * 120.00142 * 20 18 16 23 23 H 1.48503 * 109.47032 * 240.00015 * 20 18 16 24 24 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 25 25 C 1.38234 * 120.00209 * 330.02806 * 5 2 1 26 26 H 1.08997 * 109.47348 * 299.99365 * 1 2 3 27 27 H 1.09001 * 109.47359 * 60.00058 * 1 2 3 28 28 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47351 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47044 * 300.00134 * 3 2 1 31 31 H 1.09006 * 109.47112 * 59.99581 * 3 2 1 32 32 H 0.96708 * 113.99704 * 299.99281 * 4 2 1 33 33 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 34 34 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 36 36 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 37 37 H 0.96999 * 119.99608 * 345.00138 * 10 9 8 38 38 H 1.09002 * 109.47486 * 299.99813 * 14 11 10 39 39 H 1.09003 * 109.47547 * 60.00357 * 14 11 10 40 40 H 1.09002 * 109.46452 * 300.00195 * 15 14 11 41 41 H 1.08997 * 109.47274 * 59.99945 * 15 14 11 42 42 H 0.96999 * 119.99745 * 179.97438 * 19 18 16 43 43 H 1.08004 * 119.99934 * 179.72684 * 24 8 7 44 44 H 1.07999 * 120.00005 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 3.2403 -1.3817 1.1962 7 6 3.7009 -2.0337 2.3247 8 6 2.9533 -2.0149 3.4874 9 6 3.4552 -2.7262 4.7175 10 7 4.2687 -1.8060 5.5160 11 16 4.6427 -2.1800 7.0852 12 8 5.4038 -1.0690 7.5385 13 8 3.3911 -2.5010 7.6768 14 6 5.6862 -3.6586 6.9617 15 6 6.1017 -4.1082 8.3640 16 6 6.9691 -5.3363 8.2613 17 1 7.2012 -5.7540 7.2929 18 6 7.4673 -5.9259 9.4038 19 7 7.1850 -5.4168 10.5831 20 14 8.5430 -7.4476 9.2765 21 1 8.7101 -7.8177 7.8482 22 1 9.8733 -7.1647 9.8729 23 1 7.9015 -8.5699 10.0074 24 6 1.7426 -1.3484 3.5199 25 6 1.2850 -0.6910 2.3932 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.7211 -1.5952 -1.2329 33 1 3.8238 -1.3975 0.2876 34 1 4.6444 -2.5585 2.2978 35 1 2.6071 -3.0692 5.3102 36 1 4.0609 -3.5823 4.4204 37 1 4.5882 -0.9775 5.1255 38 1 5.1275 -4.4580 6.4750 39 1 6.5756 -3.4278 6.3754 40 1 6.6602 -3.3089 8.8511 41 1 5.2121 -4.3392 8.9499 42 1 7.5351 -5.8318 11.3869 43 1 1.1565 -1.3374 4.4270 44 1 0.3413 -0.1665 2.4200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186475629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:38 Heat of formation + Delta-G solvation = -116.735754 kcal Electronic energy + Delta-G solvation = -25024.888466 eV Core-core repulsion = 21261.602898 eV Total energy + Delta-G solvation = -3763.285567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33015 -37.98856 -36.59763 -35.49001 -35.17442 -33.90343 -33.03836 -31.20128 -31.16565 -30.21820 -27.80160 -25.84969 -25.61210 -22.92361 -22.36165 -21.67790 -20.44278 -18.96832 -17.98936 -17.54264 -16.85368 -16.24701 -15.89704 -15.76275 -15.37384 -15.04143 -14.98290 -14.67594 -14.54419 -14.10526 -13.78718 -13.46763 -13.35818 -13.10678 -12.84126 -12.62212 -12.51801 -12.43534 -12.19990 -12.07150 -11.76105 -11.60618 -11.56513 -11.50495 -11.33166 -11.10443 -10.98615 -10.96892 -10.43834 -10.41914 -10.39827 -9.82525 -9.51327 -9.17619 -9.06048 -8.93346 -8.51803 -6.13682 -4.19158 0.67997 1.04013 1.15075 3.10391 3.24436 3.31776 3.35025 3.53620 3.76567 4.15793 4.23214 4.36588 4.43139 4.50511 4.62629 4.65992 4.74259 4.79680 5.09919 5.13806 5.20986 5.21695 5.25823 5.30798 5.39091 5.41318 5.49911 5.61325 5.65415 5.65964 5.73170 5.79535 5.82073 5.90288 6.13855 6.25291 6.36927 6.47447 6.70696 7.06593 7.22065 7.29249 7.35270 7.79556 8.16334 8.84537 9.45661 10.97376 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002248 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.642687 B =12450.018921 C =13062.910271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.169 3.831 3 C -0.135 4.135 4 O -0.556 6.556 5 C -0.117 4.117 6 C -0.106 4.106 7 C -0.103 4.103 8 C -0.091 4.091 9 C 0.154 3.846 10 N -1.124 6.124 11 S 2.593 3.407 12 O -0.966 6.966 13 O -0.967 6.967 14 C -0.589 4.589 15 C 0.027 3.973 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C -0.101 4.101 25 C -0.115 4.115 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.378 0.622 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.413 0.587 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.264 0.736 43 H 0.128 0.872 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 9.685 -22.714 27.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.128 3.872 3 C -0.192 4.192 4 O -0.362 6.362 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.092 4.092 9 C 0.028 3.972 10 N -0.881 5.881 11 S 2.691 3.309 12 O -0.957 6.957 13 O -0.957 6.957 14 C -0.723 4.723 15 C -0.012 4.012 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.120 4.120 25 C -0.133 4.133 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.225 0.775 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.246 0.754 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.146 0.854 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.948 10.582 -21.786 27.463 hybrid contribution 0.787 -1.527 -0.382 1.760 sum -12.160 9.054 -22.168 26.857 Atomic orbital electron populations 1.22551 0.95144 1.02834 1.03022 1.19988 0.92519 0.92457 0.82203 1.21755 1.02276 0.92688 1.02521 1.86551 1.77253 1.29174 1.43194 1.20533 0.95818 0.99438 0.95991 1.20992 0.95537 0.97254 0.98636 1.21160 0.99639 0.99107 0.92313 1.19912 0.95195 0.99237 0.94881 1.20200 0.95396 0.91235 0.90329 1.55873 1.67169 1.31704 1.33360 1.05558 0.75747 0.77307 0.72330 1.93556 1.73314 1.50191 1.78628 1.93537 1.41515 1.85947 1.74674 1.30447 1.13728 1.17374 1.10739 1.18973 0.98153 0.98358 0.85702 1.21038 1.30959 1.10835 0.93067 0.91996 1.25080 0.96457 0.97734 0.95312 1.69964 1.44778 1.40424 0.97644 0.86408 0.80133 0.82491 0.78212 1.19666 1.20810 1.20798 1.21171 0.95770 0.96568 0.98449 1.21087 0.99865 0.99800 0.92499 0.91096 0.91489 0.91985 0.91660 0.91600 0.90965 0.77459 0.85359 0.85471 0.89314 0.90747 0.75369 0.86303 0.86060 0.94822 0.94786 0.92578 0.85426 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 8.12 37.16 0.30 -0.67 16 2 C 0.17 1.17 1.24 -91.77 -0.11 1.06 16 3 C -0.14 -0.93 8.82 37.16 0.33 -0.60 16 4 O -0.56 -4.08 11.97 -35.23 -0.42 -4.51 16 5 C -0.12 -0.95 4.81 -104.63 -0.50 -1.45 16 6 C -0.11 -0.91 9.35 -39.58 -0.37 -1.28 16 7 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 8 C -0.09 -0.90 5.28 -104.62 -0.55 -1.45 16 9 C 0.15 1.68 6.26 -5.19 -0.03 1.65 16 10 N -1.12 -14.22 5.88 -11.65 -0.07 -14.28 16 11 S 2.59 45.14 5.46 -107.50 -0.59 44.56 16 12 O -0.97 -19.89 18.08 -57.54 -1.04 -20.93 16 13 O -0.97 -19.57 17.50 -57.54 -1.01 -20.57 16 14 C -0.59 -10.94 6.01 37.16 0.22 -10.72 16 15 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 16 C -0.52 -14.24 9.11 -34.44 -0.31 -14.56 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.38 13.29 55.43 0.74 -25.65 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 C -0.10 -0.96 9.70 -39.58 -0.38 -1.34 16 25 C -0.11 -0.95 9.14 -39.58 -0.36 -1.31 16 26 H 0.07 0.34 6.51 -51.93 -0.34 0.01 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.38 1.68 9.04 45.56 0.41 2.09 16 33 H 0.13 1.00 7.48 -52.49 -0.39 0.61 16 34 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.09 0.99 7.64 -51.93 -0.40 0.60 16 36 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 37 H 0.41 4.64 8.61 -34.47 -0.30 4.35 16 38 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 39 H 0.12 2.03 8.14 -51.92 -0.42 1.60 16 40 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 44 H 0.13 0.81 6.17 -52.49 -0.32 0.48 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -35.69 379.96 -10.03 -45.72 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.95 Total: 3.81 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: -2.40 Total: -29.95 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.67 Total: -39.93 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -2.47 Total: -46.01 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 45.14 SS G_CDS: -0.59 Total: 44.56 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.69 -10.03 -45.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186475629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.019 kcal (2) G-P(sol) polarization free energy of solvation -35.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds