Wall clock time and date at job start Tue Mar 31 2020 14:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46946 * 2 1 4 4 O 1.42898 * 109.47298 * 240.00404 * 2 1 3 5 5 C 1.50696 * 109.47207 * 119.99724 * 2 1 3 6 6 C 1.38238 * 119.99728 * 150.00400 * 5 2 1 7 7 C 1.38235 * 120.00108 * 180.02562 * 6 5 2 8 8 C 1.38243 * 119.99617 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99586 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47014 * 89.99954 * 9 8 7 11 11 S 1.65596 * 120.00034 * 164.99846 * 10 9 8 12 12 O 1.42097 * 104.27822 * 181.07072 * 11 10 9 13 13 O 1.42107 * 104.27703 * 308.92806 * 11 10 9 14 14 C 1.81393 * 104.45000 * 64.99722 * 11 10 9 15 15 C 1.53006 * 109.47382 * 180.02562 * 14 11 10 16 16 C 1.50700 * 109.47061 * 180.02562 * 15 14 11 17 17 H 1.07989 * 120.00316 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99553 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99973 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 119.99708 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47544 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47280 * 120.00142 * 20 18 16 23 23 H 1.48503 * 109.47032 * 240.00015 * 20 18 16 24 24 C 1.38233 * 120.00248 * 0.25361 * 8 7 6 25 25 C 1.38234 * 120.00209 * 330.02806 * 5 2 1 26 26 H 1.08997 * 109.47348 * 299.99365 * 1 2 3 27 27 H 1.09001 * 109.47359 * 60.00058 * 1 2 3 28 28 H 1.09002 * 109.46939 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47351 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47044 * 300.00134 * 3 2 1 31 31 H 1.09006 * 109.47112 * 59.99581 * 3 2 1 32 32 H 0.96708 * 113.99704 * 299.99281 * 4 2 1 33 33 H 1.08000 * 120.00578 * 359.97438 * 6 5 2 34 34 H 1.07999 * 120.00165 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.46646 * 209.99280 * 9 8 7 36 36 H 1.09000 * 109.47248 * 329.99998 * 9 8 7 37 37 H 0.96999 * 119.99608 * 345.00138 * 10 9 8 38 38 H 1.09002 * 109.47486 * 299.99813 * 14 11 10 39 39 H 1.09003 * 109.47547 * 60.00357 * 14 11 10 40 40 H 1.09002 * 109.46452 * 300.00195 * 15 14 11 41 41 H 1.08997 * 109.47274 * 59.99945 * 15 14 11 42 42 H 0.96999 * 119.99745 * 179.97438 * 19 18 16 43 43 H 1.08004 * 119.99934 * 179.72684 * 24 8 7 44 44 H 1.07999 * 120.00005 * 359.97438 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1668 5 6 2.0323 -0.7103 1.2305 6 6 3.2403 -1.3817 1.1962 7 6 3.7009 -2.0337 2.3247 8 6 2.9533 -2.0149 3.4874 9 6 3.4552 -2.7262 4.7175 10 7 4.2687 -1.8060 5.5160 11 16 4.6427 -2.1800 7.0852 12 8 5.4038 -1.0690 7.5385 13 8 3.3911 -2.5010 7.6768 14 6 5.6862 -3.6586 6.9617 15 6 6.1017 -4.1082 8.3640 16 6 6.9691 -5.3363 8.2613 17 1 7.2012 -5.7540 7.2929 18 6 7.4673 -5.9259 9.4038 19 7 7.1850 -5.4168 10.5831 20 14 8.5430 -7.4476 9.2765 21 1 8.7101 -7.8177 7.8482 22 1 9.8733 -7.1647 9.8729 23 1 7.9015 -8.5699 10.0074 24 6 1.7426 -1.3484 3.5199 25 6 1.2850 -0.6910 2.3932 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 1.7211 -1.5952 -1.2329 33 1 3.8238 -1.3975 0.2876 34 1 4.6444 -2.5585 2.2978 35 1 2.6071 -3.0692 5.3102 36 1 4.0609 -3.5823 4.4204 37 1 4.5882 -0.9775 5.1255 38 1 5.1275 -4.4580 6.4750 39 1 6.5756 -3.4278 6.3754 40 1 6.6602 -3.3089 8.8511 41 1 5.2121 -4.3392 8.9499 42 1 7.5351 -5.8318 11.3869 43 1 1.1565 -1.3374 4.4270 44 1 0.3413 -0.1665 2.4200 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186475629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:38 Heat of formation + Delta-G solvation = -143.652274 kcal Electronic energy + Delta-G solvation = -25026.055653 eV Core-core repulsion = 21261.602898 eV Total energy + Delta-G solvation = -3764.452755 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95146 -38.62752 -38.12462 -37.01129 -36.10864 -35.88199 -33.64449 -33.11159 -31.85499 -30.93495 -28.26751 -27.58077 -26.65367 -23.61482 -23.54605 -23.02482 -21.03539 -20.32572 -19.11937 -18.61726 -18.30088 -17.57795 -17.05819 -16.67732 -16.51263 -16.36615 -15.97903 -15.60520 -15.56904 -15.08879 -14.76559 -14.51595 -14.40476 -14.16430 -13.89163 -13.69034 -13.41357 -13.21989 -13.18036 -13.11610 -13.09659 -12.94830 -12.91503 -12.76495 -12.61963 -12.35386 -12.23040 -12.09766 -12.01965 -11.73566 -11.58689 -11.17302 -10.97757 -10.64963 -10.38230 -9.83408 -9.63466 -8.25544 -6.39152 -0.69416 0.28150 0.48941 1.41583 1.41997 1.55268 1.90126 2.38446 2.78947 2.84097 3.08121 3.28763 3.30395 3.56225 3.76981 3.89228 4.02554 4.05991 4.11945 4.15866 4.20681 4.40663 4.45045 4.54757 4.72478 4.73632 4.78446 4.86123 4.86432 4.89151 4.95733 5.09490 5.17620 5.21879 5.29263 5.30101 5.30364 5.47758 5.62759 5.67797 5.69652 6.04860 6.06877 6.09538 6.75116 6.82307 7.30955 8.86899 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.024499 B = 0.002248 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.642687 B =12450.018921 C =13062.910271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.169 3.831 3 C -0.138 4.138 4 O -0.568 6.568 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.106 4.106 8 C -0.102 4.102 9 C 0.146 3.854 10 N -1.105 6.105 11 S 2.622 3.378 12 O -1.001 7.001 13 O -0.997 6.997 14 C -0.587 4.587 15 C 0.018 3.982 16 C -0.536 4.536 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.935 5.935 20 Si 0.974 3.026 21 H -0.255 1.255 22 H -0.280 1.280 23 H -0.278 1.278 24 C -0.113 4.113 25 C -0.116 4.116 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.389 0.611 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.423 0.577 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.005 0.995 41 H 0.008 0.992 42 H 0.267 0.733 43 H 0.128 0.872 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.985 9.080 -25.198 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.128 3.872 3 C -0.195 4.195 4 O -0.376 6.376 5 C -0.115 4.115 6 C -0.130 4.130 7 C -0.125 4.125 8 C -0.103 4.103 9 C 0.021 3.979 10 N -0.866 5.866 11 S 2.719 3.281 12 O -0.991 6.991 13 O -0.986 6.986 14 C -0.719 4.719 15 C -0.020 4.020 16 C -0.575 4.575 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.179 1.179 22 H -0.205 1.205 23 H -0.204 1.204 24 C -0.132 4.132 25 C -0.134 4.134 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.239 0.761 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.259 0.741 38 H 0.163 0.837 39 H 0.162 0.838 40 H 0.024 0.976 41 H 0.026 0.974 42 H 0.076 0.924 43 H 0.146 0.854 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.076 9.971 -24.285 29.329 hybrid contribution 0.757 -1.278 0.287 1.513 sum -12.319 8.693 -23.998 28.341 Atomic orbital electron populations 1.22524 0.93914 1.03273 1.03544 1.20029 0.93407 0.92166 0.81581 1.21790 1.01604 0.92964 1.03135 1.86527 1.77604 1.30229 1.43263 1.20724 0.95539 0.98858 0.96384 1.21135 0.95840 0.97261 0.98774 1.21313 1.00003 0.99078 0.92077 1.19832 0.95716 1.00112 0.94666 1.20458 0.95455 0.91587 0.90446 1.55378 1.67019 1.32403 1.31787 1.04404 0.74573 0.76086 0.73043 1.93503 1.74038 1.51365 1.80190 1.93498 1.42692 1.86185 1.76261 1.30334 1.15494 1.19071 1.07039 1.18838 0.96635 0.97332 0.89240 1.21555 1.30829 1.11387 0.93745 0.90499 1.26134 0.98058 1.01323 0.94945 1.70109 1.46370 1.42361 0.98591 0.85255 0.77838 0.78061 0.79027 1.17859 1.20529 1.20415 1.21322 0.95932 0.96933 0.99021 1.21283 1.00541 0.99522 0.92066 0.90371 0.91191 0.91597 0.92740 0.91149 0.90259 0.76144 0.84764 0.84295 0.89736 0.88535 0.74132 0.83672 0.83811 0.97627 0.97386 0.92446 0.85441 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 8.12 71.98 0.58 -0.95 16 2 C 0.17 2.03 1.24 -11.54 -0.01 2.01 16 3 C -0.14 -1.69 8.82 71.98 0.64 -1.05 16 4 O -0.57 -7.36 11.97 -148.98 -1.78 -9.14 16 5 C -0.11 -1.63 4.81 -19.87 -0.10 -1.73 16 6 C -0.11 -1.70 9.35 22.27 0.21 -1.50 16 7 C -0.11 -1.70 9.70 22.27 0.22 -1.48 16 8 C -0.10 -1.83 5.28 -19.86 -0.10 -1.94 16 9 C 0.15 2.90 6.26 85.63 0.54 3.43 16 10 N -1.10 -26.27 5.88 -190.77 -1.12 -27.39 16 11 S 2.62 90.56 5.46 -56.49 -0.31 90.25 16 12 O -1.00 -41.50 18.08 -127.65 -2.31 -43.81 16 13 O -1.00 -40.58 17.50 -127.65 -2.23 -42.81 16 14 C -0.59 -21.26 6.01 71.98 0.43 -20.83 16 15 C 0.02 0.95 4.98 29.85 0.15 1.10 16 16 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 17 H 0.08 3.86 7.74 -2.92 -0.02 3.84 16 18 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 19 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16 20 Si 0.97 43.03 29.54 68.60 2.03 45.06 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 24 C -0.11 -1.99 9.70 22.27 0.22 -1.77 16 25 C -0.12 -1.70 9.14 22.27 0.20 -1.50 16 26 H 0.08 0.57 6.51 -2.39 -0.02 0.55 16 27 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.39 2.77 9.04 -74.05 -0.67 2.10 16 33 H 0.13 1.85 7.48 -2.91 -0.02 1.83 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.08 1.78 7.64 -2.39 -0.02 1.76 16 36 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 37 H 0.42 8.80 8.61 -96.75 -0.83 7.96 16 38 H 0.15 4.44 8.14 -2.39 -0.02 4.42 16 39 H 0.14 4.53 8.14 -2.39 -0.02 4.51 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 43 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.14 1.51 6.17 -2.91 -0.02 1.49 16 Total: -1.00 -77.37 379.96 -2.27 -79.64 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.49 Total: 19.86 kcal Atomic # 6 Polarization: -58.86 SS G_CDS: 3.66 Total: -55.20 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -0.84 Total: -83.84 kcal Atomic # 8 Polarization: -89.43 SS G_CDS: -6.32 Total: -95.76 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: 90.56 SS G_CDS: -0.31 Total: 90.25 kcal Total: -77.37 -2.27 -79.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186475629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.015 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds