Wall clock time and date at job start Tue Mar 31 2020 15:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50705 * 119.99666 * 2 1 4 4 C 1.50690 * 120.00203 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.47326 * 355.00050 * 4 2 1 6 6 N 1.46903 * 109.47335 * 234.99697 * 4 2 1 7 7 C 1.46898 * 110.99673 * 84.99960 * 6 4 2 8 8 C 1.53006 * 109.47006 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 S 1.81000 * 109.47293 * 179.97438 * 9 8 7 11 11 C 1.76202 * 100.00020 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00485 * 359.97438 * 11 10 9 13 13 C 1.38806 * 119.99444 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00213 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99465 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47037 * 90.00432 * 15 13 11 17 17 H 1.48503 * 109.46955 * 210.00195 * 15 13 11 18 18 H 1.48505 * 109.47558 * 330.00572 * 15 13 11 19 19 C 1.50708 * 109.47136 * 114.99915 * 4 2 1 20 20 C 1.38256 * 119.96152 * 79.72849 * 19 4 2 21 21 C 1.38218 * 120.06478 * 179.72689 * 20 19 4 22 22 C 1.38406 * 119.99997 * 0.54386 * 21 20 19 23 23 F 1.35100 * 120.03454 * 179.74728 * 22 21 20 24 24 C 1.38645 * 119.93174 * 359.72514 * 22 21 20 25 25 F 1.35103 * 120.04006 * 180.02562 * 24 22 21 26 26 C 1.38209 * 119.96493 * 259.99674 * 19 4 2 27 27 H 1.07999 * 119.99315 * 179.97438 * 1 2 3 28 28 H 1.07991 * 120.00313 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46761 * 270.00472 * 3 2 1 30 30 H 1.09000 * 109.46910 * 30.00373 * 3 2 1 31 31 H 1.08995 * 109.46976 * 150.00042 * 3 2 1 32 32 H 1.00894 * 111.00528 * 208.95431 * 6 4 2 33 33 H 1.09001 * 109.47392 * 60.00807 * 7 6 4 34 34 H 1.09001 * 109.47520 * 300.00529 * 7 6 4 35 35 H 1.09001 * 109.47002 * 299.99782 * 8 7 6 36 36 H 1.08993 * 109.46955 * 60.00219 * 8 7 6 37 37 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 38 38 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 39 39 H 0.97001 * 119.99673 * 179.97438 * 14 13 11 40 40 H 1.07999 * 119.96661 * 359.97438 * 20 19 4 41 41 H 1.08003 * 119.99337 * 180.27044 * 21 20 19 42 42 H 1.08001 * 119.99733 * 0.02807 * 26 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 1.3587 -2.1316 0.0886 6 7 2.9965 -1.3324 1.1339 7 6 2.3250 -1.7931 2.3565 8 6 3.3261 -1.8075 3.5136 9 6 2.6269 -2.2880 4.7868 10 16 3.8112 -2.3059 6.1554 11 6 2.7687 -2.8801 7.4547 12 1 1.7302 -3.1001 7.2566 13 6 3.2825 -3.0497 8.7330 14 7 4.5482 -2.7811 8.9747 15 14 2.1771 -3.6577 10.1106 16 1 2.2232 -5.1411 10.1640 17 1 2.6471 -3.1010 11.4046 18 1 0.7823 -3.2147 9.8583 19 6 2.8348 -1.4392 -1.2884 20 6 4.0385 -0.7773 -1.4446 21 6 4.7504 -0.9034 -2.6226 22 6 4.2528 -1.6839 -3.6517 23 9 4.9455 -1.8035 -4.8054 24 6 3.0429 -2.3431 -3.4971 25 9 2.5554 -3.1059 -4.5000 26 6 2.3352 -2.2193 -2.3141 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4744 2.0648 0.5139 31 1 3.0159 1.1749 0.5138 32 1 3.8016 -1.9038 0.9263 33 1 1.9355 -2.7990 2.2001 34 1 1.5031 -1.1184 2.5960 35 1 4.1482 -2.4821 3.2743 36 1 3.7152 -0.8015 3.6699 37 1 1.8046 -1.6138 5.0263 38 1 2.2380 -3.2942 4.6302 39 1 4.9070 -2.8993 9.8681 40 1 4.4250 -0.1644 -0.6437 41 1 5.6927 -0.3894 -2.7417 42 1 1.3925 -2.7320 -2.1926 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187766744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:31 Heat of formation + Delta-G solvation = -63.085682 kcal Electronic energy + Delta-G solvation = -24128.917949 eV Core-core repulsion = 20256.871308 eV Total energy + Delta-G solvation = -3872.046641 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.80467 -48.88158 -40.07947 -37.40065 -34.93570 -32.50098 -32.38218 -31.42718 -30.42217 -27.52335 -26.45440 -25.54465 -24.00546 -23.52457 -22.14643 -21.12438 -18.88384 -18.19536 -17.53582 -17.47024 -17.21987 -16.65448 -16.05199 -15.48171 -15.31451 -15.26097 -14.82570 -14.81479 -14.56381 -14.44538 -14.32319 -13.67542 -13.50734 -13.30582 -13.03174 -12.86154 -12.56919 -12.47750 -12.05672 -11.71733 -11.64442 -11.52159 -11.45312 -11.24065 -11.07869 -10.82713 -10.64021 -10.45864 -9.60486 -9.48658 -9.30576 -9.06750 -9.00727 -8.66329 -8.31474 -6.53724 -6.23755 -3.93926 0.46547 0.58081 2.00348 2.93402 3.20419 3.21303 3.28249 3.36457 3.52291 3.79613 4.03978 4.21065 4.23481 4.27362 4.58452 4.66239 4.72704 4.76108 5.12220 5.15123 5.24094 5.30613 5.35697 5.36763 5.44317 5.47347 5.54207 5.58515 5.65244 5.68450 5.74380 5.85925 5.90773 5.96657 6.06794 6.29593 6.31038 6.40289 6.54071 6.57230 6.72238 6.90363 7.18434 7.59692 8.35734 9.22647 10.84413 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.020520 B = 0.002032 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.195417 B =13775.518524 C =14179.478939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 C -0.115 4.115 4 C 0.161 3.839 5 H 0.062 0.938 6 N -0.678 5.678 7 C 0.064 3.936 8 C -0.094 4.094 9 C -0.112 4.112 10 S -0.132 6.132 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.070 3.930 14 N -0.870 5.870 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.065 4.065 20 C -0.078 4.078 21 C -0.125 4.125 22 C 0.065 3.935 23 F -0.130 7.130 24 C 0.066 3.934 25 F -0.130 7.130 26 C -0.118 4.118 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.345 0.655 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.267 0.733 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.810 5.167 -25.208 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.100 4.100 3 C -0.172 4.172 4 C 0.052 3.948 5 H 0.080 0.920 6 N -0.309 5.309 7 C -0.066 4.066 8 C -0.133 4.133 9 C -0.261 4.261 10 S 0.096 5.904 11 C -0.664 4.664 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.066 4.066 20 C -0.097 4.097 21 C -0.144 4.144 22 C 0.045 3.955 23 F -0.109 7.109 24 C 0.046 3.954 25 F -0.108 7.108 26 C -0.137 4.137 27 H 0.113 0.887 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.165 0.835 33 H 0.048 0.952 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.170 0.830 41 H 0.166 0.834 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.628 6.073 -24.961 25.823 hybrid contribution -2.126 -1.928 0.262 2.883 sum -4.755 4.144 -24.699 25.492 Atomic orbital electron populations 1.23712 0.95137 1.01989 1.02624 1.21515 0.94544 0.95113 0.98800 1.20789 1.01433 0.93560 1.01407 1.19464 0.92912 0.95473 0.86963 0.92016 1.60527 1.09159 1.58942 1.02286 1.22088 0.97524 0.97992 0.88981 1.21233 0.97409 1.02575 0.92102 1.23213 1.02389 1.02098 0.98437 1.84625 1.16645 1.87635 1.01505 1.22687 0.97729 1.51049 0.94971 0.90995 1.25017 0.95525 0.95113 0.98168 1.70021 1.12673 1.45858 1.21967 0.86172 0.80179 0.78928 0.80285 1.20291 1.20743 1.19693 1.19775 0.95266 0.96208 0.95341 1.21130 0.93481 0.98029 0.97012 1.21170 1.01702 0.99155 0.92379 1.17759 0.91351 1.01865 0.84511 1.91533 1.78165 1.94693 1.46484 1.17604 0.93791 0.96551 0.87455 1.91536 1.87423 1.73119 1.58748 1.20952 1.00908 1.00561 0.91295 0.88722 0.88071 0.92140 0.92168 0.90169 0.83528 0.95164 0.90766 0.91796 0.90638 0.92115 0.92389 0.92308 0.82972 0.83425 0.83800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 13.91 29.01 0.40 -1.25 16 2 C -0.10 -0.87 4.81 -101.07 -0.49 -1.35 16 3 C -0.12 -0.94 9.11 36.01 0.33 -0.61 16 4 C 0.16 1.37 2.44 -70.02 -0.17 1.20 16 5 H 0.06 0.53 7.31 -51.93 -0.38 0.15 16 6 N -0.68 -6.47 5.17 -109.18 -0.56 -7.03 16 7 C 0.06 0.76 5.48 -3.82 -0.02 0.74 16 8 C -0.09 -1.42 5.48 -26.73 -0.15 -1.57 16 9 C -0.11 -2.18 5.67 37.16 0.21 -1.97 16 10 S -0.13 -3.41 21.44 -107.50 -2.30 -5.72 16 11 C -0.52 -14.70 9.50 30.94 0.29 -14.40 16 12 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 13 C 0.07 2.00 5.49 -17.43 -0.10 1.90 16 14 N -0.87 -25.85 13.22 55.49 0.73 -25.11 16 15 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 19 C -0.07 -0.51 4.66 -104.62 -0.49 -1.00 16 20 C -0.08 -0.56 8.30 -39.58 -0.33 -0.89 16 21 C -0.13 -0.90 10.02 -39.53 -0.40 -1.30 16 22 C 0.07 0.60 7.31 -39.37 -0.29 0.31 16 23 F -0.13 -1.35 17.18 2.25 0.04 -1.31 16 24 C 0.07 0.62 7.31 -39.37 -0.29 0.34 16 25 F -0.13 -1.38 17.18 2.25 0.04 -1.34 16 26 C -0.12 -0.96 9.65 -39.53 -0.38 -1.34 16 27 H 0.09 0.74 7.84 -52.49 -0.41 0.33 16 28 H 0.10 0.78 8.04 -52.49 -0.42 0.36 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 31 H 0.08 0.69 7.15 -51.93 -0.37 0.32 16 32 H 0.35 3.09 8.00 -39.29 -0.31 2.77 16 33 H 0.03 0.35 8.06 -51.93 -0.42 -0.06 16 34 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 38 H 0.06 1.12 8.14 -51.91 -0.42 0.70 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.15 0.97 7.15 -52.49 -0.38 0.59 16 41 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.14 0.97 8.04 -52.49 -0.42 0.55 16 LS Contribution 376.70 15.07 5.68 5.68 Total: -1.00 -30.81 376.70 -9.28 -40.09 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.03 Total: -0.45 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: -1.85 Total: -21.19 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.17 Total: -32.15 kcal Atomic # 9 Polarization: -2.73 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.30 Total: -5.72 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.81 -9.28 -40.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187766744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.995 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds