Wall clock time and date at job start Tue Mar 31 2020 15:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50705 * 119.99666 * 2 1 4 4 C 1.50690 * 120.00203 * 180.02562 * 2 1 3 5 5 H 1.08999 * 109.47326 * 355.00050 * 4 2 1 6 6 N 1.46903 * 109.47335 * 234.99697 * 4 2 1 7 7 C 1.46898 * 110.99673 * 84.99960 * 6 4 2 8 8 C 1.53006 * 109.47006 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47127 * 180.02562 * 8 7 6 10 10 S 1.81000 * 109.47293 * 179.97438 * 9 8 7 11 11 C 1.76202 * 100.00020 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00485 * 359.97438 * 11 10 9 13 13 C 1.38806 * 119.99444 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00213 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99465 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47037 * 90.00432 * 15 13 11 17 17 H 1.48503 * 109.46955 * 210.00195 * 15 13 11 18 18 H 1.48505 * 109.47558 * 330.00572 * 15 13 11 19 19 C 1.50708 * 109.47136 * 114.99915 * 4 2 1 20 20 C 1.38256 * 119.96152 * 79.72849 * 19 4 2 21 21 C 1.38218 * 120.06478 * 179.72689 * 20 19 4 22 22 C 1.38406 * 119.99997 * 0.54386 * 21 20 19 23 23 F 1.35100 * 120.03454 * 179.74728 * 22 21 20 24 24 C 1.38645 * 119.93174 * 359.72514 * 22 21 20 25 25 F 1.35103 * 120.04006 * 180.02562 * 24 22 21 26 26 C 1.38209 * 119.96493 * 259.99674 * 19 4 2 27 27 H 1.07999 * 119.99315 * 179.97438 * 1 2 3 28 28 H 1.07991 * 120.00313 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.46761 * 270.00472 * 3 2 1 30 30 H 1.09000 * 109.46910 * 30.00373 * 3 2 1 31 31 H 1.08995 * 109.46976 * 150.00042 * 3 2 1 32 32 H 1.00894 * 111.00528 * 208.95431 * 6 4 2 33 33 H 1.09001 * 109.47392 * 60.00807 * 7 6 4 34 34 H 1.09001 * 109.47520 * 300.00529 * 7 6 4 35 35 H 1.09001 * 109.47002 * 299.99782 * 8 7 6 36 36 H 1.08993 * 109.46955 * 60.00219 * 8 7 6 37 37 H 1.09001 * 109.47289 * 299.99953 * 9 8 7 38 38 H 1.09004 * 109.47261 * 59.99697 * 9 8 7 39 39 H 0.97001 * 119.99673 * 179.97438 * 14 13 11 40 40 H 1.07999 * 119.96661 * 359.97438 * 20 19 4 41 41 H 1.08003 * 119.99337 * 180.27044 * 21 20 19 42 42 H 1.08001 * 119.99733 * 0.02807 * 26 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.0636 -1.3050 -0.0006 5 1 1.3587 -2.1316 0.0886 6 7 2.9965 -1.3324 1.1339 7 6 2.3250 -1.7931 2.3565 8 6 3.3261 -1.8075 3.5136 9 6 2.6269 -2.2880 4.7868 10 16 3.8112 -2.3059 6.1554 11 6 2.7687 -2.8801 7.4547 12 1 1.7302 -3.1001 7.2566 13 6 3.2825 -3.0497 8.7330 14 7 4.5482 -2.7811 8.9747 15 14 2.1771 -3.6577 10.1106 16 1 2.2232 -5.1411 10.1640 17 1 2.6471 -3.1010 11.4046 18 1 0.7823 -3.2147 9.8583 19 6 2.8348 -1.4392 -1.2884 20 6 4.0385 -0.7773 -1.4446 21 6 4.7504 -0.9034 -2.6226 22 6 4.2528 -1.6839 -3.6517 23 9 4.9455 -1.8035 -4.8054 24 6 3.0429 -2.3431 -3.4971 25 9 2.5554 -3.1059 -4.5000 26 6 2.3352 -2.2193 -2.3141 27 1 -0.5399 -0.9354 -0.0004 28 1 -0.5400 0.9352 0.0004 29 1 2.2451 1.6198 -1.0277 30 1 1.4744 2.0648 0.5139 31 1 3.0159 1.1749 0.5138 32 1 3.8016 -1.9038 0.9263 33 1 1.9355 -2.7990 2.2001 34 1 1.5031 -1.1184 2.5960 35 1 4.1482 -2.4821 3.2743 36 1 3.7152 -0.8015 3.6699 37 1 1.8046 -1.6138 5.0263 38 1 2.2380 -3.2942 4.6302 39 1 4.9070 -2.8993 9.8681 40 1 4.4250 -0.1644 -0.6437 41 1 5.6927 -0.3894 -2.7417 42 1 1.3925 -2.7320 -2.1926 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187766744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:30 Heat of formation + Delta-G solvation = -78.692569 kcal Electronic energy + Delta-G solvation = -24129.594714 eV Core-core repulsion = 20256.871308 eV Total energy + Delta-G solvation = -3872.723407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.54075 -49.62616 -40.73285 -38.15547 -35.88001 -34.59251 -33.34724 -32.09317 -31.23408 -28.16985 -27.89722 -27.15754 -24.95483 -24.21948 -22.83014 -22.32705 -19.59489 -19.50365 -18.87393 -18.17157 -17.97068 -17.38147 -16.95803 -16.88453 -16.46837 -16.07839 -16.03760 -15.87816 -15.57646 -15.47530 -14.98865 -14.86764 -14.57540 -14.17459 -13.96218 -13.78819 -13.64721 -13.34993 -13.16142 -12.99609 -12.90659 -12.81655 -12.48372 -12.36968 -12.25897 -12.20229 -11.96766 -11.70264 -11.35993 -11.13135 -10.29557 -10.12459 -9.96506 -9.67783 -9.45312 -8.64130 -8.36345 -6.11766 -0.18849 -0.02540 1.32127 1.35683 1.39737 1.49284 1.77333 2.29537 2.31916 2.71924 2.97886 3.01368 3.31960 3.37548 3.55973 3.64888 3.96041 3.99552 4.05839 4.11834 4.14569 4.34108 4.39280 4.49283 4.60342 4.73466 4.75413 4.82052 4.85486 4.86535 4.90130 4.98260 5.05510 5.11988 5.25738 5.27032 5.33004 5.38290 5.41009 5.67925 5.77073 5.83450 6.12788 6.19205 6.42490 7.06167 8.72910 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.020520 B = 0.002032 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.195417 B =13775.518524 C =14179.478939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.113 4.113 4 C 0.167 3.833 5 H 0.065 0.935 6 N -0.674 5.674 7 C 0.079 3.921 8 C -0.082 4.082 9 C -0.088 4.088 10 S -0.197 6.197 11 C -0.538 4.538 12 H 0.072 0.928 13 C 0.015 3.985 14 N -0.907 5.907 15 Si 0.992 3.008 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.263 1.263 19 C -0.064 4.064 20 C -0.072 4.072 21 C -0.117 4.117 22 C 0.050 3.950 23 F -0.141 7.141 24 C 0.049 3.951 25 F -0.142 7.142 26 C -0.115 4.115 27 H 0.100 0.900 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.351 0.649 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.271 0.729 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 5.264 -25.416 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.111 4.111 3 C -0.170 4.170 4 C 0.057 3.943 5 H 0.083 0.917 6 N -0.306 5.306 7 C -0.052 4.052 8 C -0.121 4.121 9 C -0.237 4.237 10 S 0.031 5.969 11 C -0.686 4.686 12 H 0.090 0.910 13 C -0.190 4.190 14 N -0.543 5.543 15 Si 0.815 3.185 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.065 4.065 20 C -0.090 4.090 21 C -0.136 4.136 22 C 0.030 3.970 23 F -0.120 7.120 24 C 0.029 3.971 25 F -0.120 7.120 26 C -0.135 4.135 27 H 0.118 0.882 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.181 0.819 41 H 0.187 0.813 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -3.639 6.172 -25.187 26.186 hybrid contribution -1.816 -1.915 0.247 2.651 sum -5.455 4.257 -24.940 25.882 Atomic orbital electron populations 1.23860 0.95193 1.02568 1.02026 1.21623 0.94804 0.95345 0.99364 1.20774 1.01082 0.93331 1.01816 1.19411 0.92703 0.95585 0.86573 0.91678 1.60436 1.09397 1.58892 1.01925 1.21815 0.96306 0.98418 0.88653 1.21110 0.97887 1.01922 0.91207 1.23155 1.00745 1.02475 0.97346 1.84616 1.20146 1.87751 1.04354 1.23042 0.97990 1.51376 0.96151 0.91002 1.26058 0.97066 0.95007 1.00910 1.70152 1.14583 1.46820 1.22791 0.85037 0.78235 0.78594 0.76679 1.19326 1.19959 1.18739 1.19743 0.95478 0.96308 0.94969 1.21271 0.93066 0.97559 0.97137 1.21382 1.02292 0.98310 0.91589 1.18025 0.91531 1.02710 0.84743 1.91502 1.78401 1.94868 1.47204 1.17821 0.94368 0.97176 0.87775 1.91500 1.87637 1.73565 1.59342 1.21051 1.01222 1.00419 0.90763 0.88205 0.87575 0.91393 0.92324 0.90578 0.82876 0.94563 0.91013 0.91626 0.91229 0.92116 0.92150 0.91997 0.81877 0.81320 0.82621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.95 13.91 67.77 0.94 -2.01 16 2 C -0.11 -1.70 4.81 -16.50 -0.08 -1.78 16 3 C -0.11 -1.63 9.11 71.24 0.65 -0.98 16 4 C 0.17 2.45 2.44 43.42 0.11 2.55 16 5 H 0.07 0.95 7.31 -2.39 -0.02 0.93 16 6 N -0.67 -11.31 5.17 -499.35 -2.58 -13.89 16 7 C 0.08 1.69 5.48 86.31 0.47 2.17 16 8 C -0.08 -2.37 5.48 30.60 0.17 -2.20 16 9 C -0.09 -3.36 5.67 71.98 0.41 -2.95 16 10 S -0.20 -10.31 21.44 -56.49 -1.21 -11.52 16 11 C -0.54 -30.79 9.50 67.96 0.65 -30.15 16 12 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 13 C 0.01 0.82 5.49 84.86 0.47 1.29 16 14 N -0.91 -54.44 13.22 21.65 0.29 -54.15 16 15 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 16 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 C -0.06 -0.88 4.66 -19.86 -0.09 -0.97 16 20 C -0.07 -0.87 8.30 22.27 0.18 -0.68 16 21 C -0.12 -1.47 10.02 22.31 0.22 -1.25 16 22 C 0.05 0.87 7.31 22.41 0.16 1.04 16 23 F -0.14 -2.87 17.18 44.97 0.77 -2.10 16 24 C 0.05 0.88 7.31 22.41 0.16 1.05 16 25 F -0.14 -3.01 17.18 44.97 0.77 -2.24 16 26 C -0.12 -1.70 9.65 22.30 0.22 -1.48 16 27 H 0.10 1.35 7.84 -2.91 -0.02 1.33 16 28 H 0.11 1.44 8.04 -2.91 -0.02 1.42 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.85 8.06 -2.39 -0.02 0.83 16 31 H 0.08 1.15 7.15 -2.39 -0.02 1.14 16 32 H 0.35 5.40 8.00 -89.70 -0.72 4.68 16 33 H 0.04 0.75 8.06 -2.39 -0.02 0.74 16 34 H 0.07 1.62 8.00 -2.39 -0.02 1.60 16 35 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.16 1.64 7.15 -2.91 -0.02 1.62 16 41 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 42 H 0.16 1.84 8.04 -2.91 -0.02 1.82 16 Total: -1.00 -66.52 376.70 5.01 -61.50 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.31 Total: 13.15 kcal Atomic # 6 Polarization: -41.00 SS G_CDS: 4.64 Total: -36.36 kcal Atomic # 7 Polarization: -65.75 SS G_CDS: -2.29 Total: -68.05 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.55 Total: -4.34 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -10.31 SS G_CDS: -1.21 Total: -11.52 kcal Total: -66.52 5.01 -61.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187766744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.190 kcal (2) G-P(sol) polarization free energy of solvation -66.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds