Wall clock time and date at job start Tue Mar 31 2020 15:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.50702 * 120.00204 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.46937 * 5.00335 * 4 2 1 6 6 N 1.46901 * 109.47213 * 124.99711 * 4 2 1 7 7 C 1.46897 * 111.00153 * 275.00777 * 6 4 2 8 8 C 1.53000 * 109.46843 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47013 * 179.97438 * 8 7 6 10 10 S 1.81000 * 109.47185 * 179.97438 * 9 8 7 11 11 C 1.76197 * 100.00001 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00133 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00084 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00060 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00010 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47199 * 90.00276 * 15 13 11 17 17 H 1.48501 * 109.47098 * 209.99803 * 15 13 11 18 18 H 1.48497 * 109.47288 * 330.00212 * 15 13 11 19 19 C 1.50693 * 109.47414 * 245.00258 * 4 2 1 20 20 C 1.38257 * 119.96637 * 99.99876 * 19 4 2 21 21 C 1.38214 * 120.07045 * 179.97438 * 20 19 4 22 22 C 1.38404 * 120.00148 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.03829 * 180.02562 * 22 21 20 24 24 C 1.38647 * 119.92983 * 359.97438 * 22 21 20 25 25 F 1.35106 * 120.03539 * 179.97438 * 24 22 21 26 26 C 1.38213 * 119.96720 * 279.72557 * 19 4 2 27 27 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 29 29 H 1.08994 * 109.47126 * 89.99714 * 3 2 1 30 30 H 1.09003 * 109.47057 * 210.00026 * 3 2 1 31 31 H 1.09002 * 109.46747 * 329.99549 * 3 2 1 32 32 H 1.00901 * 110.99477 * 38.96312 * 6 4 2 33 33 H 1.09003 * 109.46906 * 299.99371 * 7 6 4 34 34 H 1.08995 * 109.47315 * 59.99854 * 7 6 4 35 35 H 1.09003 * 109.46683 * 299.99295 * 8 7 6 36 36 H 1.08995 * 109.47457 * 59.99728 * 8 7 6 37 37 H 1.09001 * 109.47134 * 299.99824 * 9 8 7 38 38 H 1.09004 * 109.47044 * 59.99532 * 9 8 7 39 39 H 0.97000 * 119.99953 * 180.02562 * 14 13 11 40 40 H 1.08002 * 119.96612 * 359.97438 * 20 19 4 41 41 H 1.08008 * 119.99558 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.99826 * 359.97438 * 26 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1317 -0.0887 6 7 2.9963 -1.3325 -1.1340 7 6 2.3248 -1.7931 -2.3566 8 6 3.3261 -1.8087 -3.5133 9 6 2.6269 -2.2891 -4.7866 10 16 3.8112 -2.3069 -6.1552 11 6 2.7691 -2.8824 -7.4542 12 1 1.7306 -3.1029 -7.2559 13 6 3.2825 -3.0514 -8.7326 14 7 4.5478 -2.7812 -8.9747 15 14 2.1774 -3.6609 -10.1099 16 1 1.5439 -2.5006 -10.7865 17 1 2.9870 -4.4253 -11.0925 18 1 1.1229 -4.5412 -9.5457 19 6 2.8346 -1.4394 1.2883 20 6 2.3349 -2.2197 2.3143 21 6 3.0406 -2.3448 3.4961 22 6 4.2487 -1.6881 3.6536 23 9 4.9394 -1.8103 4.8082 24 6 4.7499 -0.9056 2.6246 25 9 5.9288 -0.2632 2.7762 26 6 4.0435 -0.7869 1.4403 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0044 29 1 2.2452 1.6198 1.0276 30 1 3.0160 1.1747 -0.5139 31 1 1.4745 2.0647 -0.5139 32 1 3.4220 -0.4284 -1.2738 33 1 1.9352 -2.7990 -2.2002 34 1 1.5030 -1.1183 -2.5960 35 1 3.7160 -0.8030 -3.6699 36 1 4.1476 -2.4838 -3.2737 37 1 2.2372 -3.2949 -4.6298 38 1 1.8051 -1.6143 -5.0265 39 1 4.9065 -2.8990 -9.8683 40 1 1.3920 -2.7321 2.1923 41 1 2.6488 -2.9544 4.2970 42 1 4.4352 -0.1815 0.6363 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187766761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:35 Heat of formation + Delta-G solvation = -62.562346 kcal Electronic energy + Delta-G solvation = -24208.244677 eV Core-core repulsion = 20336.220729 eV Total energy + Delta-G solvation = -3872.023948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.70148 -48.77783 -40.03917 -37.60038 -34.88859 -32.46283 -32.31333 -31.15860 -30.61950 -27.85194 -26.45083 -25.54046 -24.16201 -23.19779 -22.03843 -21.15703 -19.11955 -18.19260 -17.48248 -17.42369 -17.18578 -16.56641 -16.24857 -15.33566 -15.24545 -15.18795 -14.84050 -14.80539 -14.73032 -14.26761 -14.22477 -13.81687 -13.45671 -13.24531 -13.09876 -12.89733 -12.61376 -12.46154 -12.14263 -11.86205 -11.73846 -11.50923 -11.46167 -11.32912 -11.07750 -10.82630 -10.63985 -10.47381 -9.62254 -9.45524 -9.36807 -9.06429 -8.93975 -8.62958 -8.30705 -6.53264 -6.23233 -3.93509 0.57372 0.69216 1.84206 3.01704 3.20661 3.21551 3.28520 3.49282 3.52530 3.91791 4.04338 4.20997 4.22074 4.38968 4.45870 4.55133 4.73981 4.81610 5.03302 5.12717 5.22101 5.27960 5.29874 5.33922 5.42148 5.46880 5.51727 5.53050 5.54431 5.64477 5.66018 5.69029 5.87885 5.97919 6.08143 6.19825 6.29821 6.38066 6.42524 6.56918 6.69813 6.88588 7.15719 7.59931 8.36036 9.23026 10.84937 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.019636 B = 0.002101 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.598819 B =13322.628391 C =13908.926297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.156 4.156 3 C -0.122 4.122 4 C 0.161 3.839 5 H 0.098 0.902 6 N -0.677 5.677 7 C 0.064 3.936 8 C -0.096 4.096 9 C -0.112 4.112 10 S -0.132 6.132 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.070 3.930 14 N -0.870 5.870 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.040 4.040 20 C -0.095 4.095 21 C -0.125 4.125 22 C 0.060 3.940 23 F -0.132 7.132 24 C 0.068 3.932 25 F -0.129 7.129 26 C -0.103 4.103 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.343 0.657 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.267 0.733 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 5.127 25.704 27.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.158 4.158 3 C -0.179 4.179 4 C 0.050 3.950 5 H 0.116 0.884 6 N -0.308 5.308 7 C -0.066 4.066 8 C -0.135 4.135 9 C -0.261 4.261 10 S 0.096 5.904 11 C -0.664 4.664 12 H 0.090 0.910 13 C -0.138 4.138 14 N -0.505 5.505 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.041 4.041 20 C -0.113 4.113 21 C -0.143 4.143 22 C 0.040 3.960 23 F -0.110 7.110 24 C 0.048 3.952 25 F -0.108 7.108 26 C -0.122 4.122 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.163 0.837 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.033 4.795 25.711 26.634 hybrid contribution -2.141 0.151 -0.871 2.317 sum -7.174 4.946 24.840 26.324 Atomic orbital electron populations 1.23765 0.94995 1.02220 1.00422 1.22364 0.95982 0.96224 1.01220 1.20861 1.00280 0.94370 1.02345 1.19555 0.92078 0.94900 0.88425 0.88398 1.60747 1.31746 1.33790 1.04486 1.22074 0.95921 1.00128 0.88523 1.21246 0.98067 1.02192 0.91963 1.23209 1.02249 1.02249 0.98375 1.84649 1.16721 1.87581 1.01464 1.22685 0.97734 1.51063 0.94956 0.90993 1.25019 0.95508 0.95128 0.98176 1.70023 1.12666 1.45925 1.21899 0.86170 0.79898 0.78824 0.80659 1.20293 1.20745 1.19696 1.19613 0.93910 0.95388 0.95196 1.20924 1.00250 0.98266 0.91906 1.21015 0.93175 1.00549 0.99604 1.17705 0.93510 1.01924 0.82901 1.91524 1.78654 1.94680 1.46184 1.17689 0.84536 0.97758 0.95254 1.91539 1.43823 1.79449 1.95972 1.20882 0.94787 1.01035 0.95460 0.88233 0.88166 0.91176 0.91722 0.91413 0.83660 0.90891 0.94843 0.91823 0.90646 0.92110 0.92350 0.92304 0.84350 0.83728 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.28 13.91 29.02 0.40 -0.88 16 2 C -0.16 -1.22 4.78 -101.06 -0.48 -1.70 16 3 C -0.12 -0.88 9.09 36.01 0.33 -0.55 16 4 C 0.16 1.35 2.44 -70.02 -0.17 1.17 16 5 H 0.10 0.78 7.31 -51.93 -0.38 0.40 16 6 N -0.68 -6.90 5.69 -109.19 -0.62 -7.52 16 7 C 0.06 0.76 5.48 -3.83 -0.02 0.74 16 8 C -0.10 -1.48 5.48 -26.73 -0.15 -1.63 16 9 C -0.11 -2.19 5.67 37.16 0.21 -1.98 16 10 S -0.13 -3.44 21.44 -107.50 -2.30 -5.75 16 11 C -0.52 -14.74 9.50 30.94 0.29 -14.45 16 12 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 13 C 0.07 2.00 5.49 -17.43 -0.10 1.91 16 14 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 15 Si 0.92 21.45 29.55 -169.99 -5.02 16.42 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 19 C -0.04 -0.33 4.90 -104.63 -0.51 -0.85 16 20 C -0.09 -0.68 9.66 -39.58 -0.38 -1.06 16 21 C -0.12 -0.93 10.02 -39.53 -0.40 -1.33 16 22 C 0.06 0.59 7.31 -39.37 -0.29 0.30 16 23 F -0.13 -1.44 17.18 2.25 0.04 -1.40 16 24 C 0.07 0.70 7.31 -39.37 -0.29 0.41 16 25 F -0.13 -1.51 17.18 2.25 0.04 -1.47 16 26 C -0.10 -0.94 8.61 -39.53 -0.34 -1.28 16 27 H 0.10 0.65 7.84 -52.49 -0.41 0.24 16 28 H 0.10 0.67 8.04 -52.48 -0.42 0.24 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 5.85 -51.93 -0.30 0.15 16 31 H 0.07 0.47 8.06 -51.93 -0.42 0.05 16 32 H 0.34 3.29 5.96 -39.29 -0.23 3.05 16 33 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 34 H 0.03 0.40 8.00 -51.93 -0.42 -0.02 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 38 H 0.06 1.13 8.14 -51.91 -0.42 0.71 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.14 0.67 8.04 -52.49 -0.42 0.25 16 41 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.15 1.23 6.72 -52.49 -0.35 0.88 16 LS Contribution 373.98 15.07 5.64 5.64 Total: -1.00 -31.43 373.98 -9.25 -40.68 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -5.86 Total: -0.22 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: -1.89 Total: -21.16 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.11 Total: -32.75 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.87 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -2.30 Total: -5.75 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.43 -9.25 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187766761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.882 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds