Wall clock time and date at job start Tue Mar 31 2020 15:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50706 * 120.00302 * 2 1 4 4 C 1.50702 * 120.00204 * 179.97438 * 2 1 3 5 5 H 1.09004 * 109.46937 * 5.00335 * 4 2 1 6 6 N 1.46901 * 109.47213 * 124.99711 * 4 2 1 7 7 C 1.46897 * 111.00153 * 275.00777 * 6 4 2 8 8 C 1.53000 * 109.46843 * 180.02562 * 7 6 4 9 9 C 1.53002 * 109.47013 * 179.97438 * 8 7 6 10 10 S 1.81000 * 109.47185 * 179.97438 * 9 8 7 11 11 C 1.76197 * 100.00001 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00133 * 0.02562 * 11 10 9 13 13 C 1.38797 * 120.00084 * 179.97438 * 11 10 9 14 14 N 1.31632 * 120.00060 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00010 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47199 * 90.00276 * 15 13 11 17 17 H 1.48501 * 109.47098 * 209.99803 * 15 13 11 18 18 H 1.48497 * 109.47288 * 330.00212 * 15 13 11 19 19 C 1.50693 * 109.47414 * 245.00258 * 4 2 1 20 20 C 1.38257 * 119.96637 * 99.99876 * 19 4 2 21 21 C 1.38214 * 120.07045 * 179.97438 * 20 19 4 22 22 C 1.38404 * 120.00148 * 0.02562 * 21 20 19 23 23 F 1.35103 * 120.03829 * 180.02562 * 22 21 20 24 24 C 1.38647 * 119.92983 * 359.97438 * 22 21 20 25 25 F 1.35106 * 120.03539 * 179.97438 * 24 22 21 26 26 C 1.38213 * 119.96720 * 279.72557 * 19 4 2 27 27 H 1.08002 * 120.00352 * 180.02562 * 1 2 3 28 28 H 1.08005 * 119.99880 * 359.72812 * 1 2 3 29 29 H 1.08994 * 109.47126 * 89.99714 * 3 2 1 30 30 H 1.09003 * 109.47057 * 210.00026 * 3 2 1 31 31 H 1.09002 * 109.46747 * 329.99549 * 3 2 1 32 32 H 1.00901 * 110.99477 * 38.96312 * 6 4 2 33 33 H 1.09003 * 109.46906 * 299.99371 * 7 6 4 34 34 H 1.08995 * 109.47315 * 59.99854 * 7 6 4 35 35 H 1.09003 * 109.46683 * 299.99295 * 8 7 6 36 36 H 1.08995 * 109.47457 * 59.99728 * 8 7 6 37 37 H 1.09001 * 109.47134 * 299.99824 * 9 8 7 38 38 H 1.09004 * 109.47044 * 59.99532 * 9 8 7 39 39 H 0.97000 * 119.99953 * 180.02562 * 14 13 11 40 40 H 1.08002 * 119.96612 * 359.97438 * 20 19 4 41 41 H 1.08008 * 119.99558 * 179.97438 * 21 20 19 42 42 H 1.08001 * 119.99826 * 359.97438 * 26 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 1 1.3585 -2.1317 -0.0887 6 7 2.9963 -1.3325 -1.1340 7 6 2.3248 -1.7931 -2.3566 8 6 3.3261 -1.8087 -3.5133 9 6 2.6269 -2.2891 -4.7866 10 16 3.8112 -2.3069 -6.1552 11 6 2.7691 -2.8824 -7.4542 12 1 1.7306 -3.1029 -7.2559 13 6 3.2825 -3.0514 -8.7326 14 7 4.5478 -2.7812 -8.9747 15 14 2.1774 -3.6609 -10.1099 16 1 1.5439 -2.5006 -10.7865 17 1 2.9870 -4.4253 -11.0925 18 1 1.1229 -4.5412 -9.5457 19 6 2.8346 -1.4394 1.2883 20 6 2.3349 -2.2197 2.3143 21 6 3.0406 -2.3448 3.4961 22 6 4.2487 -1.6881 3.6536 23 9 4.9394 -1.8103 4.8082 24 6 4.7499 -0.9056 2.6246 25 9 5.9288 -0.2632 2.7762 26 6 4.0435 -0.7869 1.4403 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9354 0.0044 29 1 2.2452 1.6198 1.0276 30 1 3.0160 1.1747 -0.5139 31 1 1.4745 2.0647 -0.5139 32 1 3.4220 -0.4284 -1.2738 33 1 1.9352 -2.7990 -2.2002 34 1 1.5030 -1.1183 -2.5960 35 1 3.7160 -0.8030 -3.6699 36 1 4.1476 -2.4838 -3.2737 37 1 2.2372 -3.2949 -4.6298 38 1 1.8051 -1.6143 -5.0265 39 1 4.9065 -2.8990 -9.8683 40 1 1.3920 -2.7321 2.1923 41 1 2.6488 -2.9544 4.2970 42 1 4.4352 -0.1815 0.6363 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187766761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:34 Heat of formation + Delta-G solvation = -79.048572 kcal Electronic energy + Delta-G solvation = -24208.959574 eV Core-core repulsion = 20336.220729 eV Total energy + Delta-G solvation = -3872.738844 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 327.116 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.49141 -49.57872 -40.69797 -38.33034 -35.84612 -34.59439 -33.20595 -31.82495 -31.47828 -28.41125 -27.91817 -27.14983 -25.08062 -23.96626 -22.71489 -22.36643 -19.76715 -19.52484 -18.90761 -18.15554 -17.92824 -17.33994 -17.05339 -16.88741 -16.39405 -16.15340 -16.01078 -15.84549 -15.57596 -15.49607 -14.92224 -14.80553 -14.54103 -14.14789 -13.89869 -13.86473 -13.70395 -13.39888 -13.16347 -13.02756 -12.93084 -12.68759 -12.59440 -12.48578 -12.34278 -12.15885 -12.07447 -11.72978 -11.36767 -11.13403 -10.29881 -10.09008 -10.02188 -9.64069 -9.41326 -8.65326 -8.36447 -6.12488 -0.11030 0.05780 1.27930 1.32318 1.39937 1.49530 1.76676 2.29484 2.37790 2.82014 2.97812 3.08463 3.32648 3.35345 3.58448 3.72787 3.85910 3.95543 4.06167 4.15819 4.20149 4.27708 4.37173 4.53316 4.57737 4.68082 4.73558 4.78797 4.81813 4.86985 4.87278 4.91383 5.01352 5.06232 5.10696 5.23376 5.31674 5.39401 5.40649 5.64778 5.76192 5.77725 6.08463 6.18985 6.36020 7.05838 8.72905 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.019636 B = 0.002101 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.598819 B =13322.628391 C =13908.926297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.167 4.167 3 C -0.123 4.123 4 C 0.165 3.835 5 H 0.109 0.891 6 N -0.683 5.683 7 C 0.079 3.921 8 C -0.086 4.086 9 C -0.085 4.085 10 S -0.203 6.203 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.013 3.987 14 N -0.908 5.908 15 Si 0.994 3.006 16 H -0.268 1.268 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.043 4.043 20 C -0.086 4.086 21 C -0.116 4.116 22 C 0.042 3.958 23 F -0.143 7.143 24 C 0.044 3.956 25 F -0.145 7.145 26 C -0.106 4.106 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.345 0.655 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.271 0.729 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.258 4.387 26.276 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.169 4.169 3 C -0.179 4.179 4 C 0.056 3.944 5 H 0.127 0.873 6 N -0.314 5.314 7 C -0.052 4.052 8 C -0.125 4.125 9 C -0.235 4.235 10 S 0.026 5.974 11 C -0.684 4.684 12 H 0.092 0.908 13 C -0.191 4.191 14 N -0.545 5.545 15 Si 0.816 3.184 16 H -0.193 1.193 17 H -0.200 1.200 18 H -0.186 1.186 19 C -0.044 4.044 20 C -0.104 4.104 21 C -0.135 4.135 22 C 0.022 3.978 23 F -0.122 7.122 24 C 0.024 3.976 25 F -0.124 7.124 26 C -0.125 4.125 27 H 0.129 0.871 28 H 0.123 0.877 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.166 0.834 33 H 0.097 0.903 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.187 0.813 41 H 0.189 0.811 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -7.657 4.064 26.302 27.694 hybrid contribution -1.353 0.406 -0.954 1.705 sum -9.010 4.470 25.349 27.271 Atomic orbital electron populations 1.23944 0.94821 1.03057 0.99114 1.22336 0.96225 0.95952 1.02356 1.20866 1.00209 0.94436 1.02432 1.19558 0.91804 0.95670 0.87394 0.87278 1.60677 1.32291 1.34209 1.04230 1.21818 0.94714 1.00820 0.87834 1.21136 0.98381 1.01516 0.91422 1.23135 1.00590 1.02740 0.97020 1.84687 1.20463 1.87734 1.04528 1.23039 0.97998 1.51346 0.96019 0.90833 1.26085 0.97062 0.95018 1.00978 1.70162 1.14658 1.46942 1.22719 0.85015 0.77888 0.78541 0.76964 1.19281 1.20043 1.18603 1.19729 0.93540 0.95467 0.95696 1.21276 1.00977 0.97207 0.90977 1.21325 0.91938 0.99763 1.00461 1.18017 0.94499 1.02762 0.82530 1.91489 1.79110 1.94837 1.46751 1.17957 0.84580 0.98811 0.96249 1.91490 1.44796 1.79938 1.96129 1.20932 0.95227 1.01324 0.95063 0.87142 0.87673 0.91088 0.91973 0.91239 0.83380 0.90253 0.94249 0.92003 0.91657 0.91822 0.91932 0.92020 0.81324 0.81139 0.83669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 13.91 67.79 0.94 -1.06 16 2 C -0.17 -2.22 4.78 -16.48 -0.08 -2.30 16 3 C -0.12 -1.60 9.09 71.24 0.65 -0.95 16 4 C 0.17 2.35 2.44 43.42 0.11 2.45 16 5 H 0.11 1.33 7.31 -2.38 -0.02 1.32 16 6 N -0.68 -12.64 5.69 -499.37 -2.84 -15.48 16 7 C 0.08 1.71 5.48 86.30 0.47 2.19 16 8 C -0.09 -2.57 5.48 30.60 0.17 -2.40 16 9 C -0.09 -3.29 5.67 71.98 0.41 -2.88 16 10 S -0.20 -10.73 21.44 -56.49 -1.21 -11.94 16 11 C -0.54 -30.80 9.50 67.95 0.65 -30.15 16 12 H 0.07 4.05 7.80 -2.91 -0.02 4.02 16 13 C 0.01 0.76 5.49 84.86 0.47 1.22 16 14 N -0.91 -54.95 13.22 21.65 0.29 -54.66 16 15 Si 0.99 43.66 29.55 68.60 2.03 45.69 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 19 C -0.04 -0.63 4.90 -19.87 -0.10 -0.73 16 20 C -0.09 -0.96 9.66 22.27 0.22 -0.75 16 21 C -0.12 -1.47 10.02 22.30 0.22 -1.25 16 22 C 0.04 0.80 7.31 22.41 0.16 0.96 16 23 F -0.14 -3.12 17.18 44.97 0.77 -2.34 16 24 C 0.04 0.92 7.31 22.41 0.16 1.08 16 25 F -0.14 -3.54 17.18 44.97 0.77 -2.77 16 26 C -0.11 -1.89 8.61 22.30 0.19 -1.69 16 27 H 0.11 1.04 7.84 -2.91 -0.02 1.02 16 28 H 0.11 1.12 8.04 -2.91 -0.02 1.10 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.82 5.85 -2.39 -0.01 0.81 16 31 H 0.07 0.87 8.06 -2.39 -0.02 0.85 16 32 H 0.35 6.18 5.96 -89.69 -0.53 5.65 16 33 H 0.08 1.66 8.06 -2.39 -0.02 1.64 16 34 H 0.04 0.83 8.00 -2.39 -0.02 0.81 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 40 H 0.17 0.86 8.04 -2.91 -0.02 0.84 16 41 H 0.17 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.15 2.46 6.72 -2.91 -0.02 2.44 16 Total: -1.00 -68.84 373.98 4.94 -63.90 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.49 Total: 13.86 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 4.64 Total: -36.26 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -2.56 Total: -70.14 kcal Atomic # 9 Polarization: -6.66 SS G_CDS: 1.55 Total: -5.11 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -10.73 SS G_CDS: -1.21 Total: -11.94 kcal Total: -68.84 4.94 -63.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187766761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.147 kcal (2) G-P(sol) polarization free energy of solvation -68.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds