Wall clock time and date at job start Tue Mar 31 2020 15:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46722 * 2 1 4 4 H 1.08998 * 109.47486 * 55.00082 * 3 2 1 5 5 C 1.50707 * 109.46840 * 175.00139 * 3 2 1 6 6 H 1.08002 * 120.00188 * 119.99368 * 5 3 2 7 7 C 1.37877 * 119.99892 * 300.00019 * 5 3 2 8 8 N 1.31515 * 120.00064 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00119 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46828 * 89.99870 * 9 7 5 11 11 H 1.48499 * 109.47147 * 209.99803 * 9 7 5 12 12 H 1.48495 * 109.47175 * 330.00368 * 9 7 5 13 13 O 1.45205 * 109.47030 * 294.99596 * 3 2 1 14 14 C 1.34694 * 116.99540 * 90.00613 * 13 3 2 15 15 O 1.21440 * 120.00184 * 0.02562 * 14 13 3 16 16 C 1.47900 * 119.99506 * 179.97438 * 14 13 3 17 17 C 1.39621 * 120.00641 * 359.71791 * 16 14 13 18 18 C 1.37780 * 119.99908 * 179.74280 * 17 16 14 19 19 C 1.39609 * 120.00100 * 0.55974 * 18 17 16 20 20 C 1.48025 * 119.99786 * 179.71653 * 19 18 17 21 21 O 1.21616 * 120.00096 * 336.62955 * 20 19 18 22 22 C 1.47084 * 120.00101 * 156.62133 * 20 19 18 23 23 C 1.46760 * 127.03443 * 352.35997 * 22 20 19 24 24 C 1.34406 * 106.38165 * 179.88442 * 23 22 20 25 25 N 1.36481 * 109.12511 * 0.37743 * 24 23 22 26 26 H 0.97000 * 124.80495 * 179.75361 * 25 24 23 27 27 C 1.34597 * 110.38875 * 359.74609 * 25 24 23 28 28 C 1.39606 * 120.00535 * 359.69652 * 19 18 17 29 29 C 1.37779 * 119.99897 * 0.02562 * 28 19 18 30 30 H 1.09005 * 109.46911 * 300.00165 * 1 2 3 31 31 H 1.08997 * 109.47120 * 59.99923 * 1 2 3 32 32 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46934 * 239.99799 * 2 1 3 34 34 H 1.09001 * 109.46883 * 119.99634 * 2 1 3 35 35 H 0.97000 * 120.00694 * 180.02562 * 8 7 5 36 36 H 1.07998 * 119.99968 * 0.03235 * 17 16 14 37 37 H 1.08005 * 120.00095 * 180.27818 * 18 17 16 38 38 H 1.07997 * 126.80809 * 359.97438 * 23 22 20 39 39 H 1.08004 * 125.43956 * 180.12313 * 24 23 22 40 40 H 1.08000 * 125.91366 * 179.97438 * 27 25 24 41 41 H 1.07998 * 120.00026 * 179.97438 * 28 19 18 42 42 H 1.08001 * 119.99899 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.4428 2.1130 2.0836 11 1 6.4391 -0.3110 2.1546 12 1 6.6131 0.8396 0.0270 13 8 1.6558 2.0917 -1.2408 14 6 0.4686 2.7276 -1.2561 15 8 -0.2265 2.7400 -0.2603 16 6 0.0120 3.4117 -2.4853 17 6 0.8142 3.4034 -3.6280 18 6 0.3863 4.0363 -4.7746 19 6 -0.8441 4.6958 -4.7903 20 6 -1.3008 5.3810 -6.0204 21 8 -0.4900 5.7451 -6.8504 22 6 -2.7353 5.6214 -6.2388 23 6 -3.8496 5.1172 -5.4276 24 6 -4.9741 5.5873 -5.9943 25 7 -4.6453 6.3311 -7.0904 26 1 -5.2839 6.7743 -7.6706 27 6 -3.3094 6.3625 -7.2522 28 6 -1.6439 4.7087 -3.6462 29 6 -1.2187 4.0711 -2.5012 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0603 2.9503 36 1 1.7679 2.8970 -3.6145 37 1 1.0048 4.0260 -5.6600 38 1 -3.7799 4.4935 -4.5488 39 1 -5.9779 5.4023 -5.6412 40 1 -2.7786 6.8780 -8.0389 41 1 -2.5955 5.2193 -3.6583 42 1 -1.8377 4.0807 -1.6162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187889611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:25 Heat of formation + Delta-G solvation = -51.312993 kcal Electronic energy + Delta-G solvation = -26340.937572 eV Core-core repulsion = 22445.044998 eV Total energy + Delta-G solvation = -3895.892575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44416 -40.04072 -39.19097 -37.81751 -35.73409 -33.53636 -32.42877 -31.38907 -31.03382 -30.55868 -29.48862 -27.35253 -25.62773 -23.36741 -22.91395 -22.43979 -20.97800 -20.76132 -19.61840 -19.47378 -18.64075 -17.59229 -16.61761 -16.28118 -15.74602 -15.40184 -15.26755 -14.99464 -14.75863 -14.49247 -14.29253 -14.10695 -13.82840 -13.60685 -13.21562 -12.97781 -12.85857 -12.74113 -12.49396 -12.17580 -11.87840 -11.47749 -11.33066 -11.18154 -11.01678 -10.93388 -10.66097 -10.27779 -9.97317 -9.80192 -9.66334 -9.38115 -9.22769 -9.00621 -8.97144 -8.80297 -8.72255 -8.44974 -6.18025 -4.25028 0.35237 1.37612 1.41339 2.03266 2.79791 2.81507 3.25659 3.31032 3.34380 3.35966 3.59110 3.95641 4.01571 4.33938 4.58000 4.74215 4.77875 4.94140 5.03198 5.13975 5.18044 5.30167 5.36665 5.47862 5.53430 5.72008 5.84828 6.01325 6.20907 6.24353 6.30534 6.32108 6.33252 6.43564 6.49622 6.54029 6.79561 6.87807 6.96610 6.99624 7.17079 7.23432 7.51594 7.61672 7.73650 7.92921 8.15326 8.60561 8.87770 9.40077 10.88769 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.002398 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.577488 B =11673.514841 C =12460.501056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.348 6.348 14 C 0.492 3.508 15 O -0.509 6.509 16 C -0.085 4.085 17 C -0.074 4.074 18 C -0.081 4.081 19 C -0.131 4.131 20 C 0.469 3.531 21 O -0.468 6.468 22 C -0.257 4.257 23 C -0.161 4.161 24 C -0.022 4.022 25 N -0.550 5.550 26 H 0.418 0.582 27 C 0.076 3.924 28 C -0.097 4.097 29 C -0.075 4.075 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.033 0.967 33 H 0.042 0.958 34 H 0.109 0.891 35 H 0.266 0.734 36 H 0.147 0.853 37 H 0.137 0.863 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.178 0.822 41 H 0.146 0.854 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.038 10.217 -17.219 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.336 3.664 15 O -0.400 6.400 16 C -0.086 4.086 17 C -0.092 4.092 18 C -0.099 4.099 19 C -0.132 4.132 20 C 0.350 3.650 21 O -0.346 6.346 22 C -0.265 4.265 23 C -0.184 4.184 24 C -0.150 4.150 25 N -0.144 5.144 26 H 0.255 0.745 27 C -0.061 4.061 28 C -0.115 4.115 29 C -0.093 4.093 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.155 0.845 38 H 0.174 0.826 39 H 0.188 0.812 40 H 0.195 0.805 41 H 0.163 0.837 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -16.871 10.311 -17.195 26.203 hybrid contribution 0.493 0.027 0.149 0.515 sum -16.379 10.338 -17.046 25.801 Atomic orbital electron populations 1.21865 0.98369 0.99059 1.00759 1.22024 0.92655 0.99269 1.03426 1.20729 0.95083 0.88787 0.78459 0.93403 1.21037 0.89589 1.38970 1.06296 0.91270 1.24882 0.99245 0.94742 0.95072 1.69888 1.35390 1.37844 1.09433 0.86281 0.83875 0.77680 0.78365 1.20410 1.20963 1.19577 1.86529 1.33431 1.62248 1.44244 1.20997 0.81184 0.76994 0.87211 1.90766 1.55549 1.58558 1.35120 1.19708 0.95926 0.99849 0.93131 1.21570 0.99905 0.96605 0.91136 1.21288 0.94398 0.95620 0.98603 1.20471 0.96006 1.01281 0.95412 1.19615 0.86672 0.74755 0.83978 1.90605 1.56578 1.43143 1.44245 1.21135 0.94036 1.10048 1.01303 1.22427 0.90592 1.03981 1.01446 1.21881 1.00147 1.01357 0.91574 1.41701 1.07209 1.41319 1.24215 0.74536 1.22339 0.82972 1.00943 0.99883 1.21597 0.99628 0.98586 0.91702 1.21284 0.94710 0.94741 0.98603 0.92794 0.94933 0.94772 0.93906 0.87276 0.92380 0.83485 0.84527 0.82589 0.81243 0.80473 0.83663 0.84035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.16 0.32 -2.82 16 2 C -0.14 -3.36 5.49 -26.73 -0.15 -3.51 16 3 C 0.22 5.86 2.25 -27.88 -0.06 5.80 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.49 8.90 -34.44 -0.31 -14.80 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.95 11.29 55.43 0.63 -24.33 16 9 Si 0.91 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 O -0.35 -8.23 9.05 -40.48 -0.37 -8.59 16 14 C 0.49 10.40 6.35 34.69 0.22 10.62 16 15 O -0.51 -11.69 13.52 -19.22 -0.26 -11.95 16 16 C -0.08 -1.42 5.88 -104.91 -0.62 -2.04 16 17 C -0.07 -1.11 9.60 -39.23 -0.38 -1.49 16 18 C -0.08 -1.08 9.57 -39.24 -0.38 -1.46 16 19 C -0.13 -1.66 5.81 -104.86 -0.61 -2.27 16 20 C 0.47 5.84 6.99 -31.98 -0.22 5.62 16 21 O -0.47 -6.86 17.16 5.26 0.09 -6.77 16 22 C -0.26 -2.56 6.14 -102.94 -0.63 -3.19 16 23 C -0.16 -1.30 9.15 -37.49 -0.34 -1.64 16 24 C -0.02 -0.13 11.86 -16.84 -0.20 -0.33 16 25 N -0.55 -2.61 5.89 -12.56 -0.07 -2.68 16 26 H 0.42 0.51 8.96 -40.82 -0.37 0.15 16 27 C 0.08 0.56 11.78 -16.41 -0.19 0.36 16 28 C -0.10 -1.13 8.37 -39.24 -0.33 -1.46 16 29 C -0.08 -1.05 9.58 -39.23 -0.38 -1.42 16 30 H 0.05 1.23 7.79 -51.93 -0.40 0.83 16 31 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.11 2.92 5.95 -51.93 -0.31 2.61 16 35 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.15 2.20 7.60 -52.49 -0.40 1.80 16 37 H 0.14 1.67 7.82 -52.48 -0.41 1.26 16 38 H 0.16 1.14 5.88 -52.49 -0.31 0.83 16 39 H 0.17 0.47 8.06 -52.48 -0.42 0.04 16 40 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.15 1.31 4.98 -52.49 -0.26 1.05 16 42 H 0.14 1.87 7.64 -52.49 -0.40 1.47 16 LS Contribution 357.71 15.07 5.39 5.39 Total: -1.00 -33.32 357.71 -8.74 -42.06 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -4.78 Total: 3.27 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -4.35 Total: -12.40 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.55 Total: -27.01 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.54 Total: -27.32 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.32 -8.74 -42.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187889611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.257 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds