Wall clock time and date at job start Tue Mar 31 2020 15:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46722 * 2 1 4 4 H 1.08998 * 109.47486 * 55.00082 * 3 2 1 5 5 C 1.50707 * 109.46840 * 175.00139 * 3 2 1 6 6 H 1.08002 * 120.00188 * 119.99368 * 5 3 2 7 7 C 1.37877 * 119.99892 * 300.00019 * 5 3 2 8 8 N 1.31515 * 120.00064 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00119 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46828 * 89.99870 * 9 7 5 11 11 H 1.48499 * 109.47147 * 209.99803 * 9 7 5 12 12 H 1.48495 * 109.47175 * 330.00368 * 9 7 5 13 13 O 1.45205 * 109.47030 * 294.99596 * 3 2 1 14 14 C 1.34694 * 116.99540 * 90.00613 * 13 3 2 15 15 O 1.21440 * 120.00184 * 0.02562 * 14 13 3 16 16 C 1.47900 * 119.99506 * 179.97438 * 14 13 3 17 17 C 1.39621 * 120.00641 * 359.71791 * 16 14 13 18 18 C 1.37780 * 119.99908 * 179.74280 * 17 16 14 19 19 C 1.39609 * 120.00100 * 0.55974 * 18 17 16 20 20 C 1.48025 * 119.99786 * 179.71653 * 19 18 17 21 21 O 1.21616 * 120.00096 * 336.62955 * 20 19 18 22 22 C 1.47084 * 120.00101 * 156.62133 * 20 19 18 23 23 C 1.46760 * 127.03443 * 352.35997 * 22 20 19 24 24 C 1.34406 * 106.38165 * 179.88442 * 23 22 20 25 25 N 1.36481 * 109.12511 * 0.37743 * 24 23 22 26 26 H 0.97000 * 124.80495 * 179.75361 * 25 24 23 27 27 C 1.34597 * 110.38875 * 359.74609 * 25 24 23 28 28 C 1.39606 * 120.00535 * 359.69652 * 19 18 17 29 29 C 1.37779 * 119.99897 * 0.02562 * 28 19 18 30 30 H 1.09005 * 109.46911 * 300.00165 * 1 2 3 31 31 H 1.08997 * 109.47120 * 59.99923 * 1 2 3 32 32 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.46934 * 239.99799 * 2 1 3 34 34 H 1.09001 * 109.46883 * 119.99634 * 2 1 3 35 35 H 0.97000 * 120.00694 * 180.02562 * 8 7 5 36 36 H 1.07998 * 119.99968 * 0.03235 * 17 16 14 37 37 H 1.08005 * 120.00095 * 180.27818 * 18 17 16 38 38 H 1.07997 * 126.80809 * 359.97438 * 23 22 20 39 39 H 1.08004 * 125.43956 * 180.12313 * 24 23 22 40 40 H 1.08000 * 125.91366 * 179.97438 * 27 25 24 41 41 H 1.07998 * 120.00026 * 179.97438 * 28 19 18 42 42 H 1.08001 * 119.99899 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2279 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.4428 2.1130 2.0836 11 1 6.4391 -0.3110 2.1546 12 1 6.6131 0.8396 0.0270 13 8 1.6558 2.0917 -1.2408 14 6 0.4686 2.7276 -1.2561 15 8 -0.2265 2.7400 -0.2603 16 6 0.0120 3.4117 -2.4853 17 6 0.8142 3.4034 -3.6280 18 6 0.3863 4.0363 -4.7746 19 6 -0.8441 4.6958 -4.7903 20 6 -1.3008 5.3810 -6.0204 21 8 -0.4900 5.7451 -6.8504 22 6 -2.7353 5.6214 -6.2388 23 6 -3.8496 5.1172 -5.4276 24 6 -4.9741 5.5873 -5.9943 25 7 -4.6453 6.3311 -7.0904 26 1 -5.2839 6.7743 -7.6706 27 6 -3.3094 6.3625 -7.2522 28 6 -1.6439 4.7087 -3.6462 29 6 -1.2187 4.0711 -2.5012 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0603 2.9503 36 1 1.7679 2.8970 -3.6145 37 1 1.0048 4.0260 -5.6600 38 1 -3.7799 4.4935 -4.5488 39 1 -5.9779 5.4023 -5.6412 40 1 -2.7786 6.8780 -8.0389 41 1 -2.5955 5.2193 -3.6583 42 1 -1.8377 4.0807 -1.6162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187889611.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:25 Heat of formation + Delta-G solvation = -69.629687 kcal Electronic energy + Delta-G solvation = -26341.731844 eV Core-core repulsion = 22445.044998 eV Total energy + Delta-G solvation = -3896.686846 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.03973 -41.52395 -40.37860 -38.97876 -37.55906 -35.52389 -33.57691 -33.14593 -32.18287 -31.41139 -30.03355 -29.33812 -26.84483 -25.20745 -23.96466 -23.68637 -22.27060 -21.56949 -21.34482 -20.17331 -19.33570 -19.24241 -18.51815 -17.75576 -17.09963 -17.02324 -16.60061 -16.23662 -15.83414 -15.68411 -15.21139 -14.94789 -14.87674 -14.75110 -14.60364 -14.33527 -14.21753 -13.86392 -13.66686 -13.38918 -13.34945 -13.24702 -13.10843 -12.83358 -12.79332 -12.56032 -12.14899 -12.09608 -11.76079 -11.51428 -11.35581 -10.88320 -10.82373 -10.53666 -10.17381 -10.09195 -9.76628 -9.26408 -8.27407 -6.43933 -0.78546 0.28580 0.54071 1.41760 1.43392 1.44783 1.54851 1.62338 1.94150 2.30858 2.39001 2.41291 2.81753 3.02219 3.10108 3.67822 3.87088 3.89155 4.09998 4.22038 4.25615 4.36998 4.38709 4.40169 4.45244 4.49562 4.54359 4.69364 4.82346 4.95211 5.00774 5.05732 5.08764 5.12513 5.21400 5.24702 5.33097 5.39560 5.51139 5.66608 5.68043 5.77158 5.94935 5.98269 6.09858 6.56762 6.59696 6.71601 6.93453 7.26870 8.79451 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.025389 B = 0.002398 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.577488 B =11673.514841 C =12460.501056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.065 0.935 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.264 1.264 13 O -0.356 6.356 14 C 0.489 3.511 15 O -0.534 6.534 16 C -0.110 4.110 17 C -0.076 4.076 18 C -0.082 4.082 19 C -0.127 4.127 20 C 0.468 3.532 21 O -0.500 6.500 22 C -0.295 4.295 23 C -0.185 4.185 24 C -0.007 4.007 25 N -0.533 5.533 26 H 0.437 0.563 27 C 0.085 3.915 28 C -0.077 4.077 29 C -0.070 4.070 30 H 0.037 0.963 31 H 0.035 0.965 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.088 0.912 35 H 0.271 0.729 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.159 0.841 39 H 0.204 0.796 40 H 0.192 0.808 41 H 0.178 0.822 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.890 11.149 -19.009 29.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.803 3.197 10 H -0.199 1.199 11 H -0.199 1.199 12 H -0.188 1.188 13 O -0.273 6.273 14 C 0.335 3.665 15 O -0.427 6.427 16 C -0.111 4.111 17 C -0.094 4.094 18 C -0.100 4.100 19 C -0.128 4.128 20 C 0.352 3.648 21 O -0.381 6.381 22 C -0.303 4.303 23 C -0.208 4.208 24 C -0.134 4.134 25 N -0.128 5.128 26 H 0.278 0.722 27 C -0.054 4.054 28 C -0.094 4.094 29 C -0.088 4.088 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.177 0.823 39 H 0.221 0.779 40 H 0.209 0.791 41 H 0.195 0.805 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -18.773 11.254 -19.000 28.984 hybrid contribution 0.890 -0.163 0.597 1.084 sum -17.883 11.091 -18.403 27.955 Atomic orbital electron populations 1.21716 0.96218 1.00688 1.00110 1.21870 0.94544 0.97935 1.02405 1.20439 0.94612 0.89367 0.78376 0.97316 1.21316 0.90441 1.40014 1.06959 0.91672 1.25781 1.04167 0.93867 0.94367 1.70004 1.37397 1.37884 1.09795 0.85224 0.77784 0.78016 0.78649 1.19851 1.19923 1.18846 1.86514 1.35138 1.62886 1.42734 1.21755 0.79965 0.76270 0.88490 1.90738 1.55889 1.59558 1.36466 1.19558 0.97819 1.02020 0.91708 1.21501 0.99629 0.97015 0.91270 1.21385 0.95022 0.95402 0.98230 1.20784 0.95552 1.00227 0.96248 1.19815 0.87908 0.73943 0.83115 1.90589 1.57616 1.44862 1.45004 1.21075 0.92915 1.12678 1.03641 1.22551 0.90828 1.05200 1.02196 1.22380 1.00932 0.99464 0.90661 1.41763 1.06727 1.40299 1.24004 0.72220 1.22562 0.83993 0.99694 0.99156 1.21850 1.00288 0.97206 0.90096 1.21411 0.93565 0.94165 0.99669 0.94337 0.94611 0.91884 0.93591 0.89374 0.91985 0.84107 0.83530 0.82316 0.77926 0.79115 0.80480 0.83373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.56 71.98 0.62 -5.17 16 2 C -0.13 -6.61 5.49 30.60 0.17 -6.45 16 3 C 0.23 12.47 2.25 29.85 0.07 12.54 16 4 H 0.01 0.56 7.16 -2.39 -0.02 0.54 16 5 C -0.55 -31.62 8.90 25.60 0.23 -31.39 16 6 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 7 C 0.02 1.01 5.29 84.65 0.45 1.45 16 8 N -0.91 -52.51 11.29 21.45 0.24 -52.26 16 9 Si 0.98 43.42 29.54 68.60 2.03 45.45 16 10 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 13 O -0.36 -17.62 9.05 -56.03 -0.51 -18.13 16 14 C 0.49 21.53 6.35 70.38 0.45 21.97 16 15 O -0.53 -25.59 13.52 20.03 0.27 -25.32 16 16 C -0.11 -3.75 5.88 -20.05 -0.12 -3.87 16 17 C -0.08 -2.34 9.60 22.50 0.22 -2.12 16 18 C -0.08 -2.20 9.57 22.49 0.22 -1.98 16 19 C -0.13 -3.12 5.81 -20.02 -0.12 -3.23 16 20 C 0.47 11.21 6.99 27.19 0.19 11.40 16 21 O -0.50 -14.47 17.16 -4.08 -0.07 -14.54 16 22 C -0.30 -5.25 6.14 -18.77 -0.12 -5.37 16 23 C -0.19 -2.44 9.15 23.62 0.22 -2.22 16 24 C -0.01 -0.05 11.86 83.09 0.99 0.94 16 25 N -0.53 -2.96 5.89 -193.65 -1.14 -4.10 16 26 H 0.44 -0.81 8.96 -92.71 -0.83 -1.64 16 27 C 0.09 1.01 11.78 84.22 0.99 2.00 16 28 C -0.08 -1.67 8.37 22.49 0.19 -1.48 16 29 C -0.07 -1.91 9.58 22.50 0.22 -1.69 16 30 H 0.04 1.80 7.79 -2.38 -0.02 1.78 16 31 H 0.03 1.53 6.06 -2.39 -0.01 1.52 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.09 4.89 5.95 -2.39 -0.01 4.87 16 35 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 36 H 0.14 4.42 7.60 -2.91 -0.02 4.40 16 37 H 0.15 3.58 7.82 -2.91 -0.02 3.55 16 38 H 0.16 1.88 5.88 -2.91 -0.02 1.86 16 39 H 0.20 0.06 8.06 -2.91 -0.02 0.04 16 40 H 0.19 1.64 8.06 -2.91 -0.02 1.62 16 41 H 0.18 2.72 4.98 -2.91 -0.01 2.71 16 42 H 0.15 3.83 7.64 -2.91 -0.02 3.81 16 Total: -1.00 -75.07 357.71 5.91 -69.16 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.25 Total: 14.43 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.84 Total: -14.68 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.90 Total: -56.37 kcal Atomic # 8 Polarization: -57.69 SS G_CDS: -0.31 Total: -57.99 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -75.07 5.91 -69.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187889611.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.474 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds