Wall clock time and date at job start Tue Mar 31 2020 15:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 H 1.09003 * 109.46836 * 304.99265 * 3 2 1 5 5 C 1.50701 * 109.47358 * 184.99998 * 3 2 1 6 6 H 1.07997 * 119.99800 * 239.99949 * 5 3 2 7 7 C 1.37877 * 119.99752 * 59.99003 * 5 3 2 8 8 N 1.31508 * 120.00374 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99627 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47061 * 90.00295 * 9 7 5 11 11 H 1.48501 * 109.47136 * 210.00329 * 9 7 5 12 12 H 1.48500 * 109.47076 * 330.00436 * 9 7 5 13 13 O 1.45198 * 109.47392 * 64.99623 * 3 2 1 14 14 C 1.34703 * 116.99727 * 270.00084 * 13 3 2 15 15 O 1.21445 * 119.99885 * 0.02562 * 14 13 3 16 16 C 1.47898 * 119.99390 * 180.02562 * 14 13 3 17 17 C 1.39624 * 120.00896 * 0.26841 * 16 14 13 18 18 C 1.37783 * 120.00060 * 180.27479 * 17 16 14 19 19 C 1.39608 * 120.00039 * 359.45676 * 18 17 16 20 20 C 1.48020 * 119.99797 * 180.25064 * 19 18 17 21 21 O 1.21606 * 120.00042 * 156.65713 * 20 19 18 22 22 C 1.47085 * 120.00028 * 336.65511 * 20 19 18 23 23 C 1.46763 * 127.03560 * 352.35922 * 22 20 19 24 24 C 1.34411 * 106.38073 * 179.82525 * 23 22 20 25 25 N 1.36485 * 109.12055 * 0.43501 * 24 23 22 26 26 H 0.97001 * 124.79591 * 179.68917 * 25 24 23 27 27 C 1.34590 * 110.39563 * 359.70752 * 25 24 23 28 28 C 1.39616 * 120.00419 * 0.27722 * 19 18 17 29 29 C 1.37784 * 120.00074 * 359.97438 * 28 19 18 30 30 H 1.09003 * 109.46779 * 60.00398 * 1 2 3 31 31 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47103 * 300.00747 * 1 2 3 33 33 H 1.08991 * 109.47411 * 239.99231 * 2 1 3 34 34 H 1.09003 * 109.46779 * 119.99602 * 2 1 3 35 35 H 0.97000 * 120.00129 * 179.97438 * 8 7 5 36 36 H 1.08004 * 119.99531 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.99550 * 179.72771 * 18 17 16 38 38 H 1.08002 * 126.80863 * 359.97329 * 23 22 20 39 39 H 1.08000 * 125.43816 * 180.14642 * 24 23 22 40 40 H 1.07994 * 125.91741 * 179.97438 * 27 25 24 41 41 H 1.07995 * 120.00006 * 180.02562 * 28 19 18 42 42 H 1.07999 * 119.99733 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8781 -1.2279 8 7 3.4063 0.3371 -2.1731 9 14 6.0051 0.8797 -1.3810 10 1 6.5539 -0.3522 -0.7595 11 1 6.3837 0.9210 -2.8164 12 1 6.5576 2.0717 -0.6889 13 8 1.6559 2.0917 1.2406 14 6 0.4686 2.7277 1.2558 15 8 -0.2268 2.7393 0.2602 16 6 0.0121 3.4120 2.4849 17 6 0.8141 3.4036 3.6278 18 6 0.3861 4.0363 4.7745 19 6 -0.8445 4.6955 4.7902 20 6 -1.3017 5.3799 6.0204 21 8 -2.1147 6.2814 5.9483 22 6 -0.7729 4.9695 7.3301 23 6 0.0844 3.8127 7.6142 24 6 0.3215 3.8324 8.9371 25 7 -0.3259 4.8984 9.4915 26 1 -0.3122 5.1249 10.4346 27 6 -0.9861 5.5905 8.5446 28 6 -1.6441 4.7087 3.6457 29 6 -1.2185 4.0717 2.5005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 3.8293 -0.0609 -2.9500 36 1 1.7682 2.8976 3.6141 37 1 1.0045 4.0259 5.6597 38 1 0.4537 3.0904 6.9013 39 1 0.9239 3.1161 9.4761 40 1 -1.5802 6.4776 8.7068 41 1 -2.5958 5.2190 3.6578 42 1 -1.8369 4.0823 1.6152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187889639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:29 Heat of formation + Delta-G solvation = -51.477556 kcal Electronic energy + Delta-G solvation = -26402.724078 eV Core-core repulsion = 22506.824367 eV Total energy + Delta-G solvation = -3895.899711 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.42384 -40.03949 -39.18979 -37.81602 -35.74243 -33.53114 -32.38390 -31.48815 -31.02720 -30.50248 -29.46579 -27.35524 -25.61579 -23.50023 -22.79211 -22.39513 -21.02231 -20.75869 -19.59373 -19.46627 -18.62869 -17.56885 -16.62912 -16.32251 -15.71098 -15.42397 -15.22086 -15.02301 -14.76135 -14.49147 -14.28993 -14.08827 -13.81090 -13.57531 -13.24340 -12.96903 -12.85679 -12.73483 -12.47982 -12.16119 -11.89481 -11.47787 -11.34177 -11.18199 -11.01521 -10.96892 -10.64392 -10.29140 -9.97339 -9.80991 -9.66566 -9.37816 -9.20470 -9.00549 -8.96970 -8.81574 -8.70156 -8.45676 -6.18854 -4.26026 0.35323 1.37516 1.42432 2.05853 2.81501 2.82598 3.24369 3.29796 3.33129 3.36327 3.58602 3.95915 4.01698 4.32771 4.60303 4.76052 4.80426 4.94816 5.05338 5.12626 5.14083 5.31449 5.37459 5.52093 5.57062 5.72891 5.81794 6.01073 6.22994 6.25367 6.29901 6.31876 6.34498 6.43328 6.49973 6.55694 6.79418 6.87423 6.96663 7.01754 7.16841 7.23097 7.51802 7.60817 7.73069 7.92466 8.14566 8.60082 8.86856 9.39093 10.87947 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002603 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.016484 B =10755.344442 C =11650.113584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.492 3.508 15 O -0.508 6.508 16 C -0.085 4.085 17 C -0.076 4.076 18 C -0.097 4.097 19 C -0.131 4.131 20 C 0.469 3.531 21 O -0.469 6.469 22 C -0.258 4.258 23 C -0.161 4.161 24 C -0.022 4.022 25 N -0.550 5.550 26 H 0.418 0.582 27 C 0.076 3.924 28 C -0.081 4.081 29 C -0.073 4.073 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.109 0.891 34 H 0.042 0.958 35 H 0.266 0.734 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.137 0.863 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 6.884 22.780 24.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.336 3.664 15 O -0.399 6.399 16 C -0.086 4.086 17 C -0.094 4.094 18 C -0.115 4.115 19 C -0.132 4.132 20 C 0.351 3.649 21 O -0.347 6.347 22 C -0.266 4.266 23 C -0.184 4.184 24 C -0.149 4.149 25 N -0.144 5.144 26 H 0.255 0.745 27 C -0.062 4.062 28 C -0.099 4.099 29 C -0.091 4.091 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.175 0.825 39 H 0.188 0.812 40 H 0.195 0.805 41 H 0.155 0.845 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.551 7.216 22.363 24.682 hybrid contribution 0.971 -0.145 0.120 0.989 sum -6.580 7.071 22.483 24.470 Atomic orbital electron populations 1.21869 0.98361 0.99066 1.00789 1.22022 0.92653 0.99268 1.03404 1.20725 0.95070 0.88780 0.78494 0.93413 1.21027 0.89570 1.39002 1.06296 0.91281 1.24882 0.99228 0.94777 0.95051 1.69887 1.35383 1.37782 1.09465 0.86284 0.83903 0.78659 0.77359 1.20365 1.20991 1.19616 1.86520 1.33443 1.62279 1.44236 1.21003 0.81186 0.77019 0.87223 1.90773 1.55520 1.58477 1.35138 1.19702 0.95765 0.99882 0.93239 1.21588 0.99816 0.96798 0.91239 1.21686 0.95599 0.95545 0.98670 1.20474 0.96658 1.00965 0.95072 1.19611 0.78201 0.80277 0.86852 1.90596 1.28370 1.26592 1.89185 1.21127 1.10049 1.01814 0.93586 1.22447 1.01502 0.99335 0.95107 1.21895 1.04162 0.94209 0.94650 1.41704 1.39496 1.22934 1.10307 0.74547 1.22329 0.98028 0.98186 0.87616 1.21198 0.99976 0.97607 0.91138 1.21268 0.94685 0.94606 0.98574 0.92783 0.94770 0.94933 0.87293 0.93919 0.92367 0.83498 0.83652 0.82508 0.81198 0.80507 0.84548 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.56 37.16 0.32 -2.83 16 2 C -0.14 -3.33 5.49 -26.73 -0.15 -3.48 16 3 C 0.22 5.82 2.25 -27.88 -0.06 5.76 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.35 8.90 -34.44 -0.31 -14.65 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.84 11.29 55.43 0.63 -24.22 16 9 Si 0.91 20.80 29.54 -169.99 -5.02 15.78 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 13 O -0.35 -8.13 9.05 -40.50 -0.37 -8.49 16 14 C 0.49 10.39 6.35 34.69 0.22 10.61 16 15 O -0.51 -11.82 13.52 -19.22 -0.26 -12.08 16 16 C -0.08 -1.42 5.88 -104.91 -0.62 -2.03 16 17 C -0.08 -1.08 9.60 -39.23 -0.38 -1.46 16 18 C -0.10 -1.15 8.37 -39.24 -0.33 -1.48 16 19 C -0.13 -1.66 5.81 -104.86 -0.61 -2.27 16 20 C 0.47 5.86 6.99 -31.99 -0.22 5.64 16 21 O -0.47 -6.84 17.16 5.27 0.09 -6.75 16 22 C -0.26 -2.60 6.14 -102.93 -0.63 -3.23 16 23 C -0.16 -1.34 9.16 -37.49 -0.34 -1.69 16 24 C -0.02 -0.13 11.87 -16.83 -0.20 -0.33 16 25 N -0.55 -2.73 5.89 -12.56 -0.07 -2.81 16 26 H 0.42 0.61 8.96 -40.82 -0.37 0.24 16 27 C 0.08 0.56 11.78 -16.41 -0.19 0.37 16 28 C -0.08 -1.07 9.57 -39.23 -0.38 -1.44 16 29 C -0.07 -1.08 9.58 -39.23 -0.38 -1.46 16 30 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 33 H 0.11 2.91 5.95 -51.93 -0.31 2.60 16 34 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.15 2.02 7.60 -52.48 -0.40 1.62 16 37 H 0.15 1.37 4.97 -52.49 -0.26 1.10 16 38 H 0.16 1.20 5.88 -52.49 -0.31 0.90 16 39 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.14 1.61 7.82 -52.49 -0.41 1.20 16 42 H 0.14 2.04 7.64 -52.49 -0.40 1.64 16 LS Contribution 357.70 15.07 5.39 5.39 Total: -1.00 -33.16 357.70 -8.74 -41.90 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.78 Total: 3.64 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -4.35 Total: -12.37 kcal Atomic # 7 Polarization: -27.57 SS G_CDS: 0.55 Total: -27.02 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.54 Total: -27.32 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.16 -8.74 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187889639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.574 kcal (2) G-P(sol) polarization free energy of solvation -33.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds