Wall clock time and date at job start Tue Mar 31 2020 15:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47382 * 2 1 4 4 H 1.09003 * 109.46836 * 304.99265 * 3 2 1 5 5 C 1.50701 * 109.47358 * 184.99998 * 3 2 1 6 6 H 1.07997 * 119.99800 * 239.99949 * 5 3 2 7 7 C 1.37877 * 119.99752 * 59.99003 * 5 3 2 8 8 N 1.31508 * 120.00374 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99627 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47061 * 90.00295 * 9 7 5 11 11 H 1.48501 * 109.47136 * 210.00329 * 9 7 5 12 12 H 1.48500 * 109.47076 * 330.00436 * 9 7 5 13 13 O 1.45198 * 109.47392 * 64.99623 * 3 2 1 14 14 C 1.34703 * 116.99727 * 270.00084 * 13 3 2 15 15 O 1.21445 * 119.99885 * 0.02562 * 14 13 3 16 16 C 1.47898 * 119.99390 * 180.02562 * 14 13 3 17 17 C 1.39624 * 120.00896 * 0.26841 * 16 14 13 18 18 C 1.37783 * 120.00060 * 180.27479 * 17 16 14 19 19 C 1.39608 * 120.00039 * 359.45676 * 18 17 16 20 20 C 1.48020 * 119.99797 * 180.25064 * 19 18 17 21 21 O 1.21606 * 120.00042 * 156.65713 * 20 19 18 22 22 C 1.47085 * 120.00028 * 336.65511 * 20 19 18 23 23 C 1.46763 * 127.03560 * 352.35922 * 22 20 19 24 24 C 1.34411 * 106.38073 * 179.82525 * 23 22 20 25 25 N 1.36485 * 109.12055 * 0.43501 * 24 23 22 26 26 H 0.97001 * 124.79591 * 179.68917 * 25 24 23 27 27 C 1.34590 * 110.39563 * 359.70752 * 25 24 23 28 28 C 1.39616 * 120.00419 * 0.27722 * 19 18 17 29 29 C 1.37784 * 120.00074 * 359.97438 * 28 19 18 30 30 H 1.09003 * 109.46779 * 60.00398 * 1 2 3 31 31 H 1.09000 * 109.47271 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47103 * 300.00747 * 1 2 3 33 33 H 1.08991 * 109.47411 * 239.99231 * 2 1 3 34 34 H 1.09003 * 109.46779 * 119.99602 * 2 1 3 35 35 H 0.97000 * 120.00129 * 179.97438 * 8 7 5 36 36 H 1.08004 * 119.99531 * 0.02562 * 17 16 14 37 37 H 1.07995 * 119.99550 * 179.72771 * 18 17 16 38 38 H 1.08002 * 126.80863 * 359.97329 * 23 22 20 39 39 H 1.08000 * 125.43816 * 180.14642 * 24 23 22 40 40 H 1.07994 * 125.91741 * 179.97438 * 27 25 24 41 41 H 1.07995 * 120.00006 * 180.02562 * 28 19 18 42 42 H 1.07999 * 119.99733 * 180.02562 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8781 -1.2279 8 7 3.4063 0.3371 -2.1731 9 14 6.0051 0.8797 -1.3810 10 1 6.5539 -0.3522 -0.7595 11 1 6.3837 0.9210 -2.8164 12 1 6.5576 2.0717 -0.6889 13 8 1.6559 2.0917 1.2406 14 6 0.4686 2.7277 1.2558 15 8 -0.2268 2.7393 0.2602 16 6 0.0121 3.4120 2.4849 17 6 0.8141 3.4036 3.6278 18 6 0.3861 4.0363 4.7745 19 6 -0.8445 4.6955 4.7902 20 6 -1.3017 5.3799 6.0204 21 8 -2.1147 6.2814 5.9483 22 6 -0.7729 4.9695 7.3301 23 6 0.0844 3.8127 7.6142 24 6 0.3215 3.8324 8.9371 25 7 -0.3259 4.8984 9.4915 26 1 -0.3122 5.1249 10.4346 27 6 -0.9861 5.5905 8.5446 28 6 -1.6441 4.7087 3.6457 29 6 -1.2185 4.0717 2.5005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 3.8293 -0.0609 -2.9500 36 1 1.7682 2.8976 3.6141 37 1 1.0045 4.0259 5.6597 38 1 0.4537 3.0904 6.9013 39 1 0.9239 3.1161 9.4761 40 1 -1.5802 6.4776 8.7068 41 1 -2.5958 5.2190 3.6578 42 1 -1.8369 4.0823 1.6152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187889639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:28 Heat of formation + Delta-G solvation = -69.610811 kcal Electronic energy + Delta-G solvation = -26403.510395 eV Core-core repulsion = 22506.824367 eV Total energy + Delta-G solvation = -3896.686028 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.03461 -41.52415 -40.37773 -38.97462 -37.56612 -35.51134 -33.52001 -33.17389 -32.26447 -31.34397 -30.02685 -29.33640 -26.83050 -25.23867 -24.08422 -23.46110 -22.39411 -21.52448 -21.34347 -20.16315 -19.36061 -19.19037 -18.50672 -17.79109 -17.11182 -17.01110 -16.54927 -16.25771 -15.84440 -15.67968 -15.21283 -14.92441 -14.85825 -14.75217 -14.62983 -14.33319 -14.21426 -13.83551 -13.63031 -13.42783 -13.33449 -13.26148 -13.10025 -12.83999 -12.79586 -12.53334 -12.14355 -12.08753 -11.76583 -11.51055 -11.34518 -10.87920 -10.82696 -10.52004 -10.17208 -10.09380 -9.75958 -9.25758 -8.25938 -6.42715 -0.78588 0.28454 0.54369 1.43199 1.44974 1.45714 1.56349 1.62732 1.93197 2.31215 2.39520 2.42446 2.81768 3.03913 3.09979 3.72017 3.82321 3.89819 4.10843 4.23034 4.27415 4.36543 4.38097 4.39938 4.43898 4.50108 4.54448 4.70406 4.83391 4.94537 5.01219 5.05042 5.08483 5.14981 5.21481 5.25278 5.33025 5.39096 5.52399 5.67373 5.68294 5.77804 5.95728 5.98934 6.10363 6.56764 6.61256 6.71911 6.93714 7.28187 8.80984 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002603 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.016484 B =10755.344442 C =11650.113584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.265 1.265 13 O -0.352 6.352 14 C 0.489 3.511 15 O -0.538 6.538 16 C -0.110 4.110 17 C -0.073 4.073 18 C -0.079 4.079 19 C -0.127 4.127 20 C 0.469 3.531 21 O -0.500 6.500 22 C -0.295 4.295 23 C -0.185 4.185 24 C -0.007 4.007 25 N -0.533 5.533 26 H 0.437 0.563 27 C 0.086 3.914 28 C -0.081 4.081 29 C -0.073 4.073 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.270 0.730 36 H 0.151 0.849 37 H 0.176 0.824 38 H 0.159 0.841 39 H 0.203 0.797 40 H 0.193 0.807 41 H 0.149 0.851 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 6.932 26.242 27.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.585 4.585 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.190 1.190 13 O -0.268 6.268 14 C 0.335 3.665 15 O -0.431 6.431 16 C -0.111 4.111 17 C -0.091 4.091 18 C -0.096 4.096 19 C -0.128 4.128 20 C 0.353 3.647 21 O -0.381 6.381 22 C -0.303 4.303 23 C -0.208 4.208 24 C -0.135 4.135 25 N -0.128 5.128 26 H 0.278 0.722 27 C -0.054 4.054 28 C -0.099 4.099 29 C -0.091 4.091 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.169 0.831 37 H 0.193 0.807 38 H 0.177 0.823 39 H 0.220 0.780 40 H 0.209 0.791 41 H 0.167 0.833 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.525 7.258 25.871 27.651 hybrid contribution 0.579 -0.097 -0.793 0.986 sum -5.946 7.161 25.079 26.751 Atomic orbital electron populations 1.21724 0.96463 1.00629 1.00000 1.21867 0.94300 0.97987 1.02523 1.20440 0.94712 0.89307 0.78371 0.97617 1.21314 0.90278 1.39932 1.06989 0.91337 1.25806 1.04235 0.93907 0.94343 1.70014 1.37452 1.37947 1.09873 0.85204 0.77695 0.79162 0.77491 1.19088 1.20528 1.18972 1.86500 1.34893 1.62811 1.42632 1.21773 0.80010 0.76264 0.88441 1.90748 1.56017 1.59620 1.36684 1.19532 0.97384 1.01934 0.92241 1.21660 0.99565 0.96864 0.91016 1.21908 0.95328 0.93765 0.98591 1.20785 0.96661 1.00092 0.95259 1.19796 0.77670 0.79609 0.87629 1.90582 1.29866 1.28061 1.89556 1.21075 1.12265 1.03780 0.93197 1.22565 1.02335 0.99362 0.96517 1.22377 1.02960 0.94088 0.94063 1.41763 1.37981 1.21987 1.11071 0.72234 1.22565 0.97298 0.98211 0.87298 1.21325 1.00615 0.97221 0.90702 1.21251 0.94043 0.94655 0.99186 0.94610 0.91891 0.94649 0.89443 0.93261 0.92051 0.83147 0.80683 0.82348 0.77989 0.79056 0.83292 0.84341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.86 8.56 71.98 0.62 -5.24 16 2 C -0.13 -6.52 5.49 30.59 0.17 -6.35 16 3 C 0.22 12.32 2.25 29.85 0.07 12.39 16 4 H 0.01 0.37 7.16 -2.39 -0.02 0.36 16 5 C -0.55 -30.90 8.90 25.60 0.23 -30.68 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.92 5.29 84.66 0.45 1.37 16 8 N -0.91 -52.39 11.29 21.45 0.24 -52.15 16 9 Si 0.98 42.62 29.54 68.60 2.03 44.65 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 O -0.35 -17.02 9.05 -56.12 -0.51 -17.53 16 14 C 0.49 21.55 6.35 70.38 0.45 22.00 16 15 O -0.54 -26.42 13.52 20.01 0.27 -26.15 16 16 C -0.11 -3.75 5.88 -20.05 -0.12 -3.87 16 17 C -0.07 -2.03 9.60 22.50 0.22 -1.81 16 18 C -0.08 -1.75 8.37 22.49 0.19 -1.56 16 19 C -0.13 -3.11 5.81 -20.02 -0.12 -3.22 16 20 C 0.47 11.20 6.99 27.19 0.19 11.39 16 21 O -0.50 -14.29 17.16 -4.05 -0.07 -14.36 16 22 C -0.30 -5.33 6.14 -18.77 -0.12 -5.45 16 23 C -0.19 -2.56 9.16 23.62 0.22 -2.35 16 24 C -0.01 -0.06 11.87 83.09 0.99 0.93 16 25 N -0.53 -3.21 5.89 -193.65 -1.14 -4.35 16 26 H 0.44 -0.61 8.96 -92.71 -0.83 -1.44 16 27 C 0.09 1.04 11.78 84.23 0.99 2.03 16 28 C -0.08 -2.10 9.57 22.50 0.22 -1.89 16 29 C -0.07 -2.21 9.58 22.50 0.22 -1.99 16 30 H 0.03 1.70 7.79 -2.39 -0.02 1.68 16 31 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.03 1.53 6.06 -2.38 -0.01 1.51 16 33 H 0.09 4.82 5.95 -2.39 -0.01 4.81 16 34 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 36 H 0.15 4.06 7.60 -2.91 -0.02 4.04 16 37 H 0.18 2.85 4.97 -2.91 -0.01 2.84 16 38 H 0.16 2.02 5.88 -2.91 -0.02 2.00 16 39 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 40 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 41 H 0.15 3.48 7.82 -2.91 -0.02 3.46 16 42 H 0.14 4.19 7.64 -2.91 -0.02 4.17 16 Total: -1.00 -74.60 357.70 5.91 -68.68 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.25 Total: 15.51 kcal Atomic # 6 Polarization: -19.15 SS G_CDS: 4.84 Total: -14.30 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.90 Total: -56.49 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -0.31 Total: -58.04 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -74.60 5.91 -68.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187889639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.926 kcal (2) G-P(sol) polarization free energy of solvation -74.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds