Wall clock time and date at job start Tue Mar 31 2020 15:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46645 * 2 1 4 4 H 1.08994 * 109.47130 * 55.00136 * 3 2 1 5 5 C 1.50704 * 109.46908 * 174.99894 * 3 2 1 6 6 H 1.07999 * 119.99752 * 119.99767 * 5 3 2 7 7 C 1.37874 * 119.99947 * 300.00141 * 5 3 2 8 8 N 1.31512 * 119.99964 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99899 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46937 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47168 * 119.99832 * 9 7 5 12 12 H 1.48501 * 109.47014 * 239.99848 * 9 7 5 13 13 O 1.45194 * 109.47199 * 294.99899 * 3 2 1 14 14 C 1.34681 * 117.00200 * 90.00425 * 13 3 2 15 15 O 1.21430 * 119.99914 * 359.97438 * 14 13 3 16 16 C 1.48079 * 120.00246 * 180.02562 * 14 13 3 17 17 C 1.39133 * 119.70060 * 179.72242 * 16 14 13 18 18 C 1.39254 * 118.97858 * 179.76935 * 17 16 14 19 19 O 1.35739 * 120.82032 * 180.24141 * 18 17 16 20 20 C 1.35887 * 117.99558 * 0.61582 * 19 18 17 21 21 C 1.38749 * 120.05952 * 269.70086 * 20 19 18 22 22 C 1.38142 * 119.94249 * 179.77171 * 21 20 19 23 23 C 1.38270 * 120.05850 * 0.48547 * 22 21 20 24 24 C 1.38269 * 120.11287 * 359.79393 * 23 22 21 25 25 C 1.38137 * 120.06268 * 359.95190 * 24 23 22 26 26 C 1.39238 * 118.36877 * 0.49362 * 18 17 16 27 27 C 1.38329 * 119.28942 * 359.74992 * 26 18 17 28 28 N 1.31593 * 120.98011 * 359.97438 * 27 26 18 29 29 H 1.08997 * 109.47654 * 299.99642 * 1 2 3 30 30 H 1.09006 * 109.46736 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47423 * 60.00079 * 1 2 3 32 32 H 1.08991 * 109.47352 * 119.99814 * 2 1 3 33 33 H 1.08999 * 109.47147 * 240.00490 * 2 1 3 34 34 H 0.97008 * 119.99987 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.51137 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.02702 * 0.02562 * 21 20 19 37 37 H 1.08007 * 119.96888 * 180.25724 * 22 21 20 38 38 H 1.07991 * 119.94096 * 179.76709 * 23 22 21 39 39 H 1.07996 * 119.96834 * 179.97438 * 24 23 22 40 40 H 1.07993 * 120.03180 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.35633 * 179.76727 * 26 18 17 42 42 H 1.08003 * 119.51104 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4445 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3376 2.1733 9 14 6.0048 0.8815 1.3818 10 1 6.5986 1.5466 0.1942 11 1 6.3988 1.6170 2.6102 12 1 6.4970 -0.5172 1.4630 13 8 1.6557 2.0917 -1.2406 14 6 0.4686 2.7276 -1.2560 15 8 -0.2268 2.7392 -0.2606 16 6 0.0109 3.4116 -2.4870 17 6 -1.2192 4.0617 -2.4976 18 6 -1.6327 4.7042 -3.6618 19 8 -2.8234 5.3540 -3.7122 20 6 -3.5903 5.3681 -2.5905 21 6 -4.5247 4.3654 -2.3748 22 6 -5.2997 4.3796 -1.2313 23 6 -5.1520 5.3973 -0.3070 24 6 -4.2255 6.4009 -0.5224 25 6 -3.4443 6.3886 -1.6616 26 6 -0.7971 4.6594 -4.7747 27 6 0.4095 3.9883 -4.6884 28 7 0.7762 3.3949 -3.5726 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 3.8292 -0.0602 2.9503 35 1 -1.8419 4.0714 -1.6152 36 1 -4.6432 3.5723 -3.0982 37 1 -6.0244 3.5970 -1.0610 38 1 -5.7615 5.4085 0.5843 39 1 -4.1123 7.1948 0.2008 40 1 -2.7206 7.1725 -1.8291 41 1 -1.0877 5.1435 -5.6954 42 1 1.0606 3.9516 -5.5493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187978905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:57 Heat of formation + Delta-G solvation = -50.668097 kcal Electronic energy + Delta-G solvation = -27055.513914 eV Core-core repulsion = 23159.649304 eV Total energy + Delta-G solvation = -3895.864610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.37235 -39.97090 -39.02462 -37.86733 -35.82175 -33.49144 -32.11843 -31.52142 -31.33859 -31.21695 -30.07521 -27.34542 -25.02926 -24.37757 -23.08787 -23.07792 -22.20414 -21.17411 -19.77579 -18.90871 -17.57898 -17.11785 -16.67111 -16.37211 -16.31850 -15.97358 -15.53879 -15.40226 -14.84772 -14.60338 -14.31669 -14.15605 -14.06434 -13.80065 -13.15650 -12.93769 -12.83154 -12.80911 -12.27828 -12.05016 -11.72222 -11.46324 -11.32931 -11.29223 -11.15488 -10.94857 -10.62597 -10.25927 -10.06031 -9.74619 -9.52242 -9.40065 -9.36509 -9.31725 -9.15310 -9.10488 -8.77543 -8.43178 -6.15775 -4.21926 0.57319 0.72260 1.00439 1.12127 2.71234 2.90558 3.26151 3.30200 3.34895 3.44021 3.48000 3.91396 4.29304 4.37748 4.51785 4.56173 4.59767 4.77576 4.89381 4.97117 5.03512 5.10020 5.16353 5.16840 5.45697 5.49820 5.62607 5.68759 5.90268 6.00543 6.01324 6.14231 6.23457 6.27921 6.32043 6.45264 6.49269 6.87299 6.95366 7.15671 7.17452 7.21425 7.62164 7.74242 7.78414 7.95410 8.17447 8.61390 8.91182 9.42854 10.91248 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.003165 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.470560 B = 8845.144452 C = 9764.061924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.218 3.782 4 H 0.048 0.952 5 C -0.518 4.518 6 H 0.071 0.929 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.325 6.325 14 C 0.508 3.492 15 O -0.504 6.504 16 C 0.144 3.856 17 C -0.189 4.189 18 C 0.152 3.848 19 O -0.251 6.251 20 C 0.071 3.929 21 C -0.121 4.121 22 C -0.105 4.105 23 C -0.111 4.111 24 C -0.105 4.105 25 C -0.121 4.121 26 C -0.182 4.182 27 C 0.129 3.871 28 N -0.449 5.449 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.029 0.971 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.153 0.847 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.149 0.851 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.151 10.225 -10.463 21.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.165 3.835 4 H 0.066 0.934 5 C -0.556 4.556 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.738 3.262 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.240 6.240 14 C 0.350 3.650 15 O -0.393 6.393 16 C 0.007 3.993 17 C -0.210 4.210 18 C 0.102 3.898 19 O -0.161 6.161 20 C 0.029 3.971 21 C -0.139 4.139 22 C -0.123 4.123 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.139 4.139 26 C -0.202 4.202 27 C -0.030 4.030 28 N -0.163 5.163 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.128 0.872 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.171 0.829 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.150 0.850 41 H 0.166 0.834 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.588 9.757 -10.046 20.955 hybrid contribution 0.001 0.324 0.313 0.450 sum -15.587 10.081 -9.734 20.960 Atomic orbital electron populations 1.21866 0.98483 0.99074 1.00612 1.22025 0.92549 0.99269 1.03519 1.20801 0.95302 0.88867 0.78512 0.93434 1.21089 0.89540 1.38696 1.06229 0.91079 1.24878 0.99255 0.94776 0.95044 1.69902 1.35268 1.38068 1.09479 0.86225 0.83908 0.77862 0.78205 1.19406 1.20803 1.20726 1.86665 1.32431 1.61212 1.43652 1.20528 0.81625 0.77033 0.85863 1.90795 1.55774 1.58609 1.34136 1.20326 0.90633 0.95938 0.92370 1.22216 0.98542 1.00962 0.99313 1.19327 0.85172 0.91430 0.93916 1.84376 1.27572 1.70031 1.34146 1.18648 0.94095 0.96627 0.87727 1.21409 0.96618 0.97686 0.98204 1.21105 0.99225 0.98683 0.93314 1.21331 0.98081 0.94176 0.99353 1.21105 0.95444 0.99110 0.96653 1.21419 1.00371 0.98850 0.93261 1.21736 0.95409 1.04668 0.98417 1.22817 0.93086 0.91323 0.95776 1.67843 1.32905 1.16836 0.98741 0.92781 0.94709 0.95148 0.87195 0.93783 0.92487 0.82919 0.85025 0.84978 0.85219 0.84969 0.85004 0.83371 0.81011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.56 37.16 0.32 -2.89 16 2 C -0.14 -3.44 5.49 -26.73 -0.15 -3.59 16 3 C 0.22 5.93 2.25 -27.88 -0.06 5.87 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.78 8.90 -34.44 -0.31 -15.09 16 6 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.23 11.29 55.43 0.63 -24.60 16 9 Si 0.91 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 O -0.33 -8.23 9.62 -40.44 -0.39 -8.62 16 14 C 0.51 11.44 6.40 34.77 0.22 11.66 16 15 O -0.50 -11.90 13.50 -19.21 -0.26 -12.16 16 16 C 0.14 2.67 6.74 -83.06 -0.56 2.11 16 17 C -0.19 -2.97 8.79 -38.87 -0.34 -3.31 16 18 C 0.15 1.99 6.71 -38.83 -0.26 1.73 16 19 O -0.25 -3.05 10.00 -3.08 -0.03 -3.08 16 20 C 0.07 0.81 4.01 -39.20 -0.16 0.66 16 21 C -0.12 -1.26 9.93 -39.43 -0.39 -1.65 16 22 C -0.11 -0.95 10.04 -39.60 -0.40 -1.34 16 23 C -0.11 -0.96 10.04 -39.56 -0.40 -1.35 16 24 C -0.11 -0.95 10.04 -39.61 -0.40 -1.35 16 25 C -0.12 -1.26 9.96 -39.42 -0.39 -1.66 16 26 C -0.18 -2.00 10.08 -39.18 -0.39 -2.39 16 27 C 0.13 1.59 11.17 -17.62 -0.20 1.39 16 28 N -0.45 -7.76 10.12 -9.88 -0.10 -7.86 16 29 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.03 0.66 6.06 -51.93 -0.31 0.35 16 32 H 0.11 2.99 5.95 -51.93 -0.31 2.68 16 33 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.15 2.45 6.45 -52.48 -0.34 2.12 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.15 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.17 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 362.01 15.07 5.46 5.46 Total: -1.00 -32.40 362.01 -8.76 -41.17 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -5.09 Total: 2.99 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -3.96 Total: -9.57 kcal Atomic # 7 Polarization: -32.99 SS G_CDS: 0.53 Total: -32.46 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.68 Total: -23.87 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.40 -8.76 -41.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187978905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.502 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds