Wall clock time and date at job start Tue Mar 31 2020 15:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46645 * 2 1 4 4 H 1.08994 * 109.47130 * 55.00136 * 3 2 1 5 5 C 1.50704 * 109.46908 * 174.99894 * 3 2 1 6 6 H 1.07999 * 119.99752 * 119.99767 * 5 3 2 7 7 C 1.37874 * 119.99947 * 300.00141 * 5 3 2 8 8 N 1.31512 * 119.99964 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99899 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46937 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47168 * 119.99832 * 9 7 5 12 12 H 1.48501 * 109.47014 * 239.99848 * 9 7 5 13 13 O 1.45194 * 109.47199 * 294.99899 * 3 2 1 14 14 C 1.34681 * 117.00200 * 90.00425 * 13 3 2 15 15 O 1.21430 * 119.99914 * 359.97438 * 14 13 3 16 16 C 1.48079 * 120.00246 * 180.02562 * 14 13 3 17 17 C 1.39133 * 119.70060 * 179.72242 * 16 14 13 18 18 C 1.39254 * 118.97858 * 179.76935 * 17 16 14 19 19 O 1.35739 * 120.82032 * 180.24141 * 18 17 16 20 20 C 1.35887 * 117.99558 * 0.61582 * 19 18 17 21 21 C 1.38749 * 120.05952 * 269.70086 * 20 19 18 22 22 C 1.38142 * 119.94249 * 179.77171 * 21 20 19 23 23 C 1.38270 * 120.05850 * 0.48547 * 22 21 20 24 24 C 1.38269 * 120.11287 * 359.79393 * 23 22 21 25 25 C 1.38137 * 120.06268 * 359.95190 * 24 23 22 26 26 C 1.39238 * 118.36877 * 0.49362 * 18 17 16 27 27 C 1.38329 * 119.28942 * 359.74992 * 26 18 17 28 28 N 1.31593 * 120.98011 * 359.97438 * 27 26 18 29 29 H 1.08997 * 109.47654 * 299.99642 * 1 2 3 30 30 H 1.09006 * 109.46736 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47423 * 60.00079 * 1 2 3 32 32 H 1.08991 * 109.47352 * 119.99814 * 2 1 3 33 33 H 1.08999 * 109.47147 * 240.00490 * 2 1 3 34 34 H 0.97008 * 119.99987 * 180.02562 * 8 7 5 35 35 H 1.08004 * 120.51137 * 0.02562 * 17 16 14 36 36 H 1.07999 * 120.02702 * 0.02562 * 21 20 19 37 37 H 1.08007 * 119.96888 * 180.25724 * 22 21 20 38 38 H 1.07991 * 119.94096 * 179.76709 * 23 22 21 39 39 H 1.07996 * 119.96834 * 179.97438 * 24 23 22 40 40 H 1.07993 * 120.03180 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.35633 * 179.76727 * 26 18 17 42 42 H 1.08003 * 119.51104 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4445 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1432 0.8786 1.2280 8 7 3.4061 0.3376 2.1733 9 14 6.0048 0.8815 1.3818 10 1 6.5986 1.5466 0.1942 11 1 6.3988 1.6170 2.6102 12 1 6.4970 -0.5172 1.4630 13 8 1.6557 2.0917 -1.2406 14 6 0.4686 2.7276 -1.2560 15 8 -0.2268 2.7392 -0.2606 16 6 0.0109 3.4116 -2.4870 17 6 -1.2192 4.0617 -2.4976 18 6 -1.6327 4.7042 -3.6618 19 8 -2.8234 5.3540 -3.7122 20 6 -3.5903 5.3681 -2.5905 21 6 -4.5247 4.3654 -2.3748 22 6 -5.2997 4.3796 -1.2313 23 6 -5.1520 5.3973 -0.3070 24 6 -4.2255 6.4009 -0.5224 25 6 -3.4443 6.3886 -1.6616 26 6 -0.7971 4.6594 -4.7747 27 6 0.4095 3.9883 -4.6884 28 7 0.7762 3.3949 -3.5726 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 3.8292 -0.0602 2.9503 35 1 -1.8419 4.0714 -1.6152 36 1 -4.6432 3.5723 -3.0982 37 1 -6.0244 3.5970 -1.0610 38 1 -5.7615 5.4085 0.5843 39 1 -4.1123 7.1948 0.2008 40 1 -2.7206 7.1725 -1.8291 41 1 -1.0877 5.1435 -5.6954 42 1 1.0606 3.9516 -5.5493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187978905.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:56 Heat of formation + Delta-G solvation = -68.379657 kcal Electronic energy + Delta-G solvation = -27056.281945 eV Core-core repulsion = 23159.649304 eV Total energy + Delta-G solvation = -3896.632641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.40416 -41.42345 -40.30986 -38.74629 -37.72019 -35.53599 -33.49683 -33.04614 -32.60485 -32.05908 -30.89937 -29.39261 -26.52432 -25.35236 -25.03034 -23.81034 -23.16850 -22.70471 -21.58108 -20.18600 -18.92871 -18.59272 -18.29082 -17.50086 -17.31281 -17.19043 -17.07894 -16.99351 -16.43461 -15.77342 -15.41269 -15.29286 -14.98387 -14.89187 -14.77605 -14.50035 -14.20030 -13.79146 -13.63909 -13.42297 -13.36661 -13.15557 -13.06319 -12.84001 -12.59734 -12.50377 -12.14649 -12.08142 -11.85040 -11.70375 -11.42942 -10.86201 -10.77085 -10.56972 -10.50895 -10.18594 -10.05959 -9.87608 -8.28352 -6.44834 -0.65890 -0.05837 0.05439 0.27419 1.38586 1.41277 1.42438 1.55410 1.73079 1.89365 2.38791 2.64988 2.72017 3.00937 3.16513 3.45296 3.70631 3.77122 3.84772 3.85470 4.13516 4.18252 4.28825 4.33403 4.35118 4.36784 4.44572 4.48458 4.56954 4.68841 4.75580 4.79974 4.93612 5.03640 5.17214 5.25444 5.27530 5.30121 5.35154 5.43351 5.49109 5.63124 5.70394 5.86842 6.05902 6.24968 6.52081 6.67465 6.94009 7.25697 8.78956 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.003165 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.470560 B = 8845.144452 C = 9764.061924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 C 0.221 3.779 4 H 0.010 0.990 5 C -0.550 4.550 6 H 0.062 0.938 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.982 3.018 10 H -0.266 1.266 11 H -0.274 1.274 12 H -0.269 1.269 13 O -0.340 6.340 14 C 0.502 3.498 15 O -0.527 6.527 16 C 0.113 3.887 17 C -0.185 4.185 18 C 0.151 3.849 19 O -0.246 6.246 20 C 0.044 3.956 21 C -0.133 4.133 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.112 4.112 25 C -0.135 4.135 26 C -0.151 4.151 27 C 0.133 3.867 28 N -0.484 5.484 29 H 0.039 0.961 30 H 0.064 0.936 31 H 0.029 0.971 32 H 0.091 0.909 33 H 0.044 0.956 34 H 0.271 0.729 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.136 0.864 41 H 0.194 0.806 42 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.606 10.903 -12.098 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.028 0.972 5 C -0.587 4.587 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.805 3.195 10 H -0.191 1.191 11 H -0.199 1.199 12 H -0.194 1.194 13 O -0.255 6.255 14 C 0.346 3.654 15 O -0.417 6.417 16 C -0.022 4.022 17 C -0.206 4.206 18 C 0.100 3.900 19 O -0.156 6.156 20 C 0.003 3.997 21 C -0.152 4.152 22 C -0.129 4.129 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.171 4.171 27 C -0.026 4.026 28 N -0.199 5.199 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.154 0.846 41 H 0.211 0.789 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -16.074 10.442 -11.686 22.449 hybrid contribution 0.003 0.216 0.761 0.791 sum -16.071 10.658 -10.925 22.163 Atomic orbital electron populations 1.21711 0.96313 1.00760 0.99878 1.21868 0.94449 0.97882 1.02460 1.20534 0.94876 0.89470 0.78325 0.97194 1.21319 0.90305 1.40123 1.06979 0.91946 1.25780 1.04303 0.93727 0.94198 1.70008 1.37363 1.37880 1.09812 0.85154 0.77588 0.78439 0.78342 1.19056 1.19926 1.19425 1.86643 1.34308 1.62048 1.42456 1.21310 0.80363 0.76345 0.87383 1.90753 1.55988 1.59446 1.35521 1.19788 0.92267 0.98512 0.91624 1.22061 0.97302 1.01071 1.00206 1.19516 0.85926 0.90996 0.93557 1.84405 1.27043 1.69613 1.34551 1.18900 0.94806 0.97727 0.88283 1.21610 0.96812 0.97716 0.99018 1.21457 0.99296 0.99371 0.92795 1.21726 0.97820 0.93538 1.00000 1.21448 0.95125 0.99893 0.96535 1.21614 1.00983 0.98946 0.93745 1.22232 0.93703 1.02171 0.98981 1.23556 0.94079 0.89809 0.95145 1.67728 1.33783 1.18622 0.99757 0.94143 0.91656 0.95204 0.89060 0.93726 0.91921 0.84137 0.84469 0.82772 0.82668 0.82889 0.84599 0.78873 0.76758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.56 71.98 0.62 -5.32 16 2 C -0.13 -6.77 5.49 30.60 0.17 -6.60 16 3 C 0.22 12.68 2.25 29.85 0.07 12.74 16 4 H 0.01 0.65 7.16 -2.39 -0.02 0.63 16 5 C -0.55 -32.57 8.90 25.60 0.23 -32.34 16 6 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -52.89 11.29 21.45 0.24 -52.65 16 9 Si 0.98 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 13 O -0.34 -18.10 9.62 -55.90 -0.54 -18.64 16 14 C 0.50 23.85 6.40 70.43 0.45 24.31 16 15 O -0.53 -26.42 13.50 20.06 0.27 -26.15 16 16 C 0.11 4.31 6.74 41.82 0.28 4.60 16 17 C -0.18 -5.87 8.79 22.73 0.20 -5.67 16 18 C 0.15 3.72 6.71 22.75 0.15 3.87 16 19 O -0.25 -5.64 10.00 -33.93 -0.34 -5.98 16 20 C 0.04 1.00 4.01 22.52 0.09 1.09 16 21 C -0.13 -2.70 9.93 22.37 0.22 -2.48 16 22 C -0.11 -1.88 10.04 22.25 0.22 -1.65 16 23 C -0.11 -1.78 10.04 22.28 0.22 -1.55 16 24 C -0.11 -1.92 10.04 22.25 0.22 -1.70 16 25 C -0.13 -2.77 9.96 22.37 0.22 -2.55 16 26 C -0.15 -2.79 10.08 22.53 0.23 -2.57 16 27 C 0.13 2.90 11.17 84.75 0.95 3.85 16 28 N -0.48 -16.56 10.12 -185.19 -1.87 -18.43 16 29 H 0.04 1.93 7.79 -2.39 -0.02 1.91 16 30 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.03 1.34 6.06 -2.38 -0.01 1.32 16 32 H 0.09 5.14 5.95 -2.39 -0.01 5.13 16 33 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 35 H 0.14 4.73 6.45 -2.91 -0.02 4.71 16 36 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 38 H 0.16 1.57 8.06 -2.92 -0.02 1.55 16 39 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 41 H 0.19 1.88 8.06 -2.91 -0.02 1.86 16 42 H 0.22 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -74.36 362.01 5.82 -68.54 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.04 Total: 17.77 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.99 Total: -10.41 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -1.63 Total: -71.08 kcal Atomic # 8 Polarization: -50.17 SS G_CDS: -0.61 Total: -50.77 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -74.36 5.82 -68.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187978905.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.157 kcal (2) G-P(sol) polarization free energy of solvation -74.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds