Wall clock time and date at job start Tue Mar 31 2020 15:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 H 1.09007 * 109.47051 * 304.99848 * 3 2 1 5 5 C 1.50701 * 109.47185 * 185.00030 * 3 2 1 6 6 H 1.07998 * 120.00004 * 239.99912 * 5 3 2 7 7 C 1.37876 * 119.99705 * 60.00353 * 5 3 2 8 8 N 1.31513 * 120.00493 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99948 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47636 * 89.99682 * 9 7 5 11 11 H 1.48504 * 109.47037 * 209.99937 * 9 7 5 12 12 H 1.48506 * 109.46631 * 329.99247 * 9 7 5 13 13 O 1.45200 * 109.47132 * 64.99947 * 3 2 1 14 14 C 1.34749 * 116.99992 * 270.00331 * 13 3 2 15 15 O 1.21498 * 120.00244 * 359.97438 * 14 13 3 16 16 C 1.47466 * 119.99608 * 180.02562 * 14 13 3 17 17 C 1.39802 * 120.09281 * 359.71742 * 16 14 13 18 18 C 1.37675 * 119.90629 * 179.72111 * 17 16 14 19 19 C 1.39034 * 120.09070 * 0.58165 * 18 17 16 20 20 O 1.35681 * 119.90951 * 179.69514 * 19 18 17 21 21 C 1.35889 * 118.00202 * 247.47521 * 20 19 18 22 22 C 1.39171 * 120.47533 * 186.11240 * 21 20 19 23 23 C 1.38527 * 118.37026 * 179.97438 * 22 21 20 24 24 C 1.38259 * 119.22668 * 0.02562 * 23 22 21 25 25 N 1.31856 * 120.88944 * 0.02562 * 24 23 22 26 26 C 1.31838 * 121.78044 * 359.65855 * 25 24 23 27 27 C 1.39043 * 120.18199 * 359.67493 * 19 18 17 28 28 C 1.37668 * 120.09144 * 0.04551 * 27 19 18 29 29 H 1.08997 * 109.47055 * 300.00140 * 1 2 3 30 30 H 1.08998 * 109.46836 * 59.99909 * 1 2 3 31 31 H 1.08998 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46757 * 240.00292 * 2 1 3 33 33 H 1.08997 * 109.47348 * 120.00659 * 2 1 3 34 34 H 0.97002 * 120.00682 * 180.02562 * 8 7 5 35 35 H 1.07994 * 120.04592 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.95045 * 180.26094 * 18 17 16 37 37 H 1.08001 * 120.81556 * 0.02562 * 22 21 20 38 38 H 1.08006 * 120.38836 * 180.02562 * 23 22 21 39 39 H 1.07999 * 119.55754 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.65518 * 180.33909 * 26 25 24 41 41 H 1.08001 * 119.95091 * 180.02562 * 27 19 18 42 42 H 1.08004 * 120.04479 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1730 9 14 6.0050 0.8799 -1.3813 10 1 6.5539 -0.3521 -0.7600 11 1 6.3835 0.9213 -2.8167 12 1 6.5576 2.0719 -0.6891 13 8 1.6560 2.0917 1.2407 14 6 0.4682 2.7279 1.2560 15 8 -0.2272 2.7402 0.2598 16 6 0.0131 3.4100 2.4816 17 6 0.8096 3.3929 3.6304 18 6 0.3835 4.0359 4.7708 19 6 -0.8425 4.6914 4.7846 20 8 -1.2616 5.3187 5.9124 21 6 -2.3398 4.8082 6.5632 22 6 -2.8910 5.4798 7.6504 23 6 -3.9901 4.9203 8.2813 24 6 -4.4991 3.7225 7.8147 25 7 -3.9524 3.1110 6.7823 26 6 -2.9098 3.6128 6.1503 27 6 -1.6402 4.7063 3.6458 28 6 -1.2189 4.0706 2.4997 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0618 -2.9496 35 1 1.7600 2.8801 3.6218 36 1 1.0002 4.0267 5.6573 37 1 -2.4728 6.4146 7.9933 38 1 -4.4440 5.4140 9.1279 39 1 -5.3555 3.2813 8.3028 40 1 -2.4927 3.0857 5.3051 41 1 -2.5917 5.2170 3.6606 42 1 -1.8389 4.0830 1.6154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188044092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:36 Heat of formation + Delta-G solvation = -54.731517 kcal Electronic energy + Delta-G solvation = -26492.685106 eV Core-core repulsion = 22596.644292 eV Total energy + Delta-G solvation = -3896.040813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51482 -40.02209 -39.30741 -37.67512 -35.76538 -33.56205 -32.83214 -31.49795 -31.41090 -31.03527 -30.11444 -27.32761 -25.01351 -24.02233 -23.50798 -22.83462 -22.74556 -20.92431 -19.65413 -19.11932 -17.82463 -17.46201 -17.04251 -16.80169 -16.16579 -15.86700 -15.33117 -15.24790 -14.80547 -14.64750 -14.40708 -14.31670 -13.71098 -13.53945 -13.40783 -13.02523 -12.89837 -12.80946 -12.61513 -12.46197 -11.93895 -11.52352 -11.39151 -11.21190 -11.16935 -10.99841 -10.67263 -10.31701 -10.17431 -9.91227 -9.87137 -9.73261 -9.41495 -9.28883 -9.16701 -8.85267 -8.68103 -8.48155 -6.21385 -4.28760 0.42297 0.71900 0.87489 1.13015 2.50268 3.01946 3.22758 3.28080 3.31216 3.40038 3.53309 3.78939 4.15618 4.27381 4.30268 4.46803 4.60060 4.62246 4.64600 4.88942 5.08964 5.10817 5.14206 5.15492 5.39406 5.44664 5.58043 5.65828 5.78236 6.02215 6.02914 6.15173 6.21101 6.25788 6.30924 6.43899 6.46509 6.83738 6.93193 7.09397 7.13593 7.19284 7.57512 7.57832 7.69960 7.88759 8.11446 8.55020 8.83080 9.36464 10.85344 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.025229 B = 0.002403 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.586884 B =11649.287799 C =12122.288296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.349 6.349 14 C 0.494 3.506 15 O -0.509 6.509 16 C -0.108 4.108 17 C -0.045 4.045 18 C -0.131 4.131 19 C 0.097 3.903 20 O -0.249 6.249 21 C 0.072 3.928 22 C -0.103 4.103 23 C -0.136 4.136 24 C 0.063 3.937 25 N -0.449 5.449 26 C 0.035 3.965 27 C -0.153 4.153 28 C -0.043 4.043 29 H 0.031 0.969 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.109 0.891 33 H 0.042 0.958 34 H 0.267 0.733 35 H 0.153 0.847 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.136 0.864 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.420 8.956 19.027 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.338 3.662 15 O -0.400 6.400 16 C -0.109 4.109 17 C -0.063 4.063 18 C -0.149 4.149 19 C 0.055 3.945 20 O -0.160 6.160 21 C 0.027 3.973 22 C -0.129 4.129 23 C -0.156 4.156 24 C -0.094 4.094 25 N -0.158 5.158 26 C -0.123 4.123 27 C -0.171 4.171 28 C -0.062 4.062 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.161 0.839 39 H 0.177 0.823 40 H 0.179 0.821 41 H 0.154 0.846 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.791 8.213 18.285 23.779 hybrid contribution 1.202 0.691 -0.058 1.388 sum -11.589 8.904 18.227 23.362 Atomic orbital electron populations 1.21865 0.98348 0.99114 1.00741 1.22029 0.92661 0.99250 1.03452 1.20737 0.95090 0.88781 0.78401 0.93380 1.21021 0.89542 1.39114 1.06308 0.91284 1.24883 0.99260 0.94746 0.95040 1.69884 1.35414 1.37683 1.09494 0.86280 0.83848 0.78680 0.77376 1.20339 1.20967 1.19627 1.86529 1.33368 1.62281 1.44341 1.20792 0.81262 0.77006 0.87114 1.90793 1.55525 1.58528 1.35111 1.19631 0.96091 1.01622 0.93565 1.21525 0.99586 0.94808 0.90376 1.21120 0.96549 0.97302 0.99975 1.18958 0.94691 0.95993 0.84828 1.84318 1.43653 1.51177 1.36823 1.20236 0.88706 0.94271 0.94111 1.20965 0.96359 1.00943 0.94638 1.22042 0.95943 0.96940 1.00652 1.22778 0.99852 0.93059 0.93755 1.67618 1.08374 1.32806 1.07032 1.23137 0.94667 0.93410 1.01114 1.21330 1.01188 1.02059 0.92573 1.21181 0.94214 0.92783 0.97979 0.94969 0.92786 0.94730 0.87254 0.93903 0.92337 0.82915 0.84194 0.83746 0.83857 0.82342 0.82138 0.84622 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.57 37.16 0.32 -2.79 16 2 C -0.14 -3.32 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.77 2.25 -27.88 -0.06 5.71 16 4 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 5 C -0.52 -14.27 8.90 -34.44 -0.31 -14.57 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.68 11.29 55.43 0.63 -24.06 16 9 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 13 O -0.35 -7.98 9.05 -40.62 -0.37 -8.35 16 14 C 0.49 10.10 6.34 34.49 0.22 10.32 16 15 O -0.51 -11.48 13.53 -19.26 -0.26 -11.74 16 16 C -0.11 -1.70 5.87 -104.97 -0.62 -2.32 16 17 C -0.04 -0.60 9.61 -39.20 -0.38 -0.98 16 18 C -0.13 -1.49 9.97 -39.49 -0.39 -1.88 16 19 C 0.10 1.11 4.75 -38.99 -0.19 0.93 16 20 O -0.25 -2.74 10.00 -2.90 -0.03 -2.77 16 21 C 0.07 0.73 6.56 -39.06 -0.26 0.47 16 22 C -0.10 -0.81 10.13 -39.13 -0.40 -1.20 16 23 C -0.14 -0.89 10.11 -39.47 -0.40 -1.28 16 24 C 0.06 0.51 11.18 -17.53 -0.20 0.31 16 25 N -0.45 -5.02 10.36 -13.12 -0.14 -5.15 16 26 C 0.03 0.39 9.97 -17.37 -0.17 0.21 16 27 C -0.15 -1.73 8.34 -39.49 -0.33 -2.06 16 28 C -0.04 -0.58 9.58 -39.21 -0.38 -0.96 16 29 H 0.03 0.67 6.06 -51.93 -0.31 0.36 16 30 H 0.05 1.22 7.79 -51.93 -0.40 0.82 16 31 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.11 2.90 5.95 -51.93 -0.31 2.59 16 33 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.15 2.02 7.60 -52.49 -0.40 1.62 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.47 8.06 -52.48 -0.42 0.04 16 39 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.16 1.81 6.20 -52.49 -0.33 1.48 16 41 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.15 1.90 7.64 -52.48 -0.40 1.50 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -30.88 359.08 -8.58 -39.45 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.03 Total: 3.45 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -3.77 Total: -11.95 kcal Atomic # 7 Polarization: -29.70 SS G_CDS: 0.49 Total: -29.21 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.66 Total: -22.86 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.88 -8.58 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188044092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.278 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds