Wall clock time and date at job start Tue Mar 31 2020 15:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 H 1.09007 * 109.47051 * 304.99848 * 3 2 1 5 5 C 1.50701 * 109.47185 * 185.00030 * 3 2 1 6 6 H 1.07998 * 120.00004 * 239.99912 * 5 3 2 7 7 C 1.37876 * 119.99705 * 60.00353 * 5 3 2 8 8 N 1.31513 * 120.00493 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99948 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47636 * 89.99682 * 9 7 5 11 11 H 1.48504 * 109.47037 * 209.99937 * 9 7 5 12 12 H 1.48506 * 109.46631 * 329.99247 * 9 7 5 13 13 O 1.45200 * 109.47132 * 64.99947 * 3 2 1 14 14 C 1.34749 * 116.99992 * 270.00331 * 13 3 2 15 15 O 1.21498 * 120.00244 * 359.97438 * 14 13 3 16 16 C 1.47466 * 119.99608 * 180.02562 * 14 13 3 17 17 C 1.39802 * 120.09281 * 359.71742 * 16 14 13 18 18 C 1.37675 * 119.90629 * 179.72111 * 17 16 14 19 19 C 1.39034 * 120.09070 * 0.58165 * 18 17 16 20 20 O 1.35681 * 119.90951 * 179.69514 * 19 18 17 21 21 C 1.35889 * 118.00202 * 247.47521 * 20 19 18 22 22 C 1.39171 * 120.47533 * 186.11240 * 21 20 19 23 23 C 1.38527 * 118.37026 * 179.97438 * 22 21 20 24 24 C 1.38259 * 119.22668 * 0.02562 * 23 22 21 25 25 N 1.31856 * 120.88944 * 0.02562 * 24 23 22 26 26 C 1.31838 * 121.78044 * 359.65855 * 25 24 23 27 27 C 1.39043 * 120.18199 * 359.67493 * 19 18 17 28 28 C 1.37668 * 120.09144 * 0.04551 * 27 19 18 29 29 H 1.08997 * 109.47055 * 300.00140 * 1 2 3 30 30 H 1.08998 * 109.46836 * 59.99909 * 1 2 3 31 31 H 1.08998 * 109.47434 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46757 * 240.00292 * 2 1 3 33 33 H 1.08997 * 109.47348 * 120.00659 * 2 1 3 34 34 H 0.97002 * 120.00682 * 180.02562 * 8 7 5 35 35 H 1.07994 * 120.04592 * 0.02562 * 17 16 14 36 36 H 1.08001 * 119.95045 * 180.26094 * 18 17 16 37 37 H 1.08001 * 120.81556 * 0.02562 * 22 21 20 38 38 H 1.08006 * 120.38836 * 180.02562 * 23 22 21 39 39 H 1.07999 * 119.55754 * 179.97438 * 24 23 22 40 40 H 1.08000 * 119.65518 * 180.33909 * 26 25 24 41 41 H 1.08001 * 119.95091 * 180.02562 * 27 19 18 42 42 H 1.08004 * 120.04479 * 180.02562 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4063 0.3366 -2.1730 9 14 6.0050 0.8799 -1.3813 10 1 6.5539 -0.3521 -0.7600 11 1 6.3835 0.9213 -2.8167 12 1 6.5576 2.0719 -0.6891 13 8 1.6560 2.0917 1.2407 14 6 0.4682 2.7279 1.2560 15 8 -0.2272 2.7402 0.2598 16 6 0.0131 3.4100 2.4816 17 6 0.8096 3.3929 3.6304 18 6 0.3835 4.0359 4.7708 19 6 -0.8425 4.6914 4.7846 20 8 -1.2616 5.3187 5.9124 21 6 -2.3398 4.8082 6.5632 22 6 -2.8910 5.4798 7.6504 23 6 -3.9901 4.9203 8.2813 24 6 -4.4991 3.7225 7.8147 25 7 -3.9524 3.1110 6.7823 26 6 -2.9098 3.6128 6.1503 27 6 -1.6402 4.7063 3.6458 28 6 -1.2189 4.0706 2.4997 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8293 -0.0618 -2.9496 35 1 1.7600 2.8801 3.6218 36 1 1.0002 4.0267 5.6573 37 1 -2.4728 6.4146 7.9933 38 1 -4.4440 5.4140 9.1279 39 1 -5.3555 3.2813 8.3028 40 1 -2.4927 3.0857 5.3051 41 1 -2.5917 5.2170 3.6606 42 1 -1.8389 4.0830 1.6154 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188044092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:35 Heat of formation + Delta-G solvation = -70.861746 kcal Electronic energy + Delta-G solvation = -26493.384565 eV Core-core repulsion = 22596.644292 eV Total energy + Delta-G solvation = -3896.740272 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34114 -41.45714 -40.29921 -38.74982 -37.52480 -35.52220 -33.55805 -33.35195 -32.37990 -32.00479 -31.04325 -29.29954 -26.18206 -25.14199 -24.71422 -24.02862 -23.73445 -22.41406 -21.41632 -19.97087 -19.31631 -18.60770 -18.27976 -17.73184 -17.64311 -17.24564 -16.97035 -16.52016 -16.11754 -15.57733 -15.34893 -15.17426 -14.95841 -14.79855 -14.65651 -14.25866 -14.07616 -14.02855 -13.80638 -13.41165 -13.33750 -13.30776 -13.12392 -13.08087 -12.82395 -12.55252 -12.18964 -12.13772 -11.78314 -11.52297 -11.35706 -10.84558 -10.79113 -10.61766 -10.53267 -10.27042 -10.07782 -9.51672 -8.27614 -6.44387 -0.66078 0.05774 0.13692 0.23726 1.34521 1.42119 1.43873 1.54725 1.90327 1.96482 2.40992 2.59627 2.75238 3.02175 3.46200 3.60792 3.63776 3.70871 3.81630 3.92060 3.99570 4.06929 4.20678 4.27018 4.36187 4.38321 4.51655 4.56636 4.64618 4.79687 4.82909 4.90695 4.96399 5.03768 5.07225 5.10091 5.19737 5.20627 5.35959 5.36815 5.50656 5.62894 5.65704 5.94342 6.08963 6.25222 6.59519 6.92179 6.92291 7.26532 8.79213 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.025229 B = 0.002403 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.586884 B =11649.287799 C =12122.288296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.226 3.774 4 H 0.008 0.992 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.266 1.266 13 O -0.355 6.355 14 C 0.491 3.509 15 O -0.539 6.539 16 C -0.135 4.135 17 C -0.042 4.042 18 C -0.124 4.124 19 C 0.112 3.888 20 O -0.251 6.251 21 C 0.055 3.945 22 C -0.100 4.100 23 C -0.121 4.121 24 C 0.057 3.943 25 N -0.483 5.483 26 C 0.016 3.984 27 C -0.144 4.144 28 C -0.041 4.041 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.270 0.730 35 H 0.151 0.849 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.184 0.816 39 H 0.185 0.815 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.914 10.162 22.217 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.804 3.196 10 H -0.192 1.192 11 H -0.204 1.204 12 H -0.190 1.190 13 O -0.271 6.271 14 C 0.337 3.663 15 O -0.432 6.432 16 C -0.136 4.136 17 C -0.061 4.061 18 C -0.142 4.142 19 C 0.069 3.931 20 O -0.162 6.162 21 C 0.011 3.989 22 C -0.126 4.126 23 C -0.140 4.140 24 C -0.100 4.100 25 N -0.193 5.193 26 C -0.141 4.141 27 C -0.162 4.162 28 C -0.059 4.059 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.169 0.831 36 H 0.184 0.816 37 H 0.186 0.814 38 H 0.201 0.799 39 H 0.202 0.798 40 H 0.165 0.835 41 H 0.174 0.826 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.298 9.424 21.491 26.973 hybrid contribution 1.168 0.411 -0.864 1.510 sum -12.130 9.836 20.627 25.872 Atomic orbital electron populations 1.21717 0.96394 1.00615 1.00039 1.21874 0.94364 0.98057 1.02459 1.20426 0.94657 0.89265 0.78397 0.97455 1.21313 0.90339 1.39984 1.06948 0.91424 1.25800 1.04206 0.93914 0.94365 1.70010 1.37431 1.37868 1.09894 0.85212 0.77736 0.79112 0.77537 1.19206 1.20413 1.19007 1.86508 1.35029 1.62892 1.42658 1.21601 0.79990 0.76216 0.88456 1.90765 1.55989 1.59712 1.36688 1.19421 0.97940 1.03910 0.92363 1.21507 0.99233 0.95047 0.90281 1.21292 0.96795 0.96223 0.99867 1.19051 0.94387 0.94492 0.85156 1.84292 1.44312 1.51093 1.36486 1.20379 0.88823 0.94602 0.95146 1.21383 0.96281 1.01485 0.93491 1.22475 0.94779 0.95945 1.00839 1.23355 1.00208 0.93618 0.92822 1.67585 1.09017 1.34145 1.08578 1.22979 0.95480 0.94125 1.01507 1.21450 1.01813 1.01273 0.91653 1.21172 0.93294 0.92703 0.98772 0.94634 0.94483 0.91983 0.89427 0.93447 0.92027 0.83082 0.81618 0.81437 0.79862 0.79793 0.83497 0.82602 0.83840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 8.57 71.98 0.62 -5.20 16 2 C -0.13 -6.56 5.49 30.60 0.17 -6.39 16 3 C 0.23 12.32 2.25 29.85 0.07 12.39 16 4 H 0.01 0.47 7.16 -2.38 -0.02 0.45 16 5 C -0.55 -30.96 8.90 25.60 0.23 -30.73 16 6 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.28 11.29 21.45 0.24 -52.04 16 9 Si 0.98 42.75 29.54 68.60 2.03 44.78 16 10 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 O -0.35 -17.01 9.05 -56.59 -0.51 -17.52 16 14 C 0.49 21.12 6.34 70.25 0.45 21.56 16 15 O -0.54 -25.81 13.53 19.84 0.27 -25.54 16 16 C -0.14 -4.38 5.87 -20.09 -0.12 -4.50 16 17 C -0.04 -1.14 9.61 22.52 0.22 -0.93 16 18 C -0.12 -2.64 9.97 22.33 0.22 -2.41 16 19 C 0.11 2.38 4.75 22.65 0.11 2.49 16 20 O -0.25 -4.94 10.00 -33.30 -0.33 -5.28 16 21 C 0.06 1.00 6.56 22.61 0.15 1.15 16 22 C -0.10 -1.22 10.13 22.56 0.23 -1.00 16 23 C -0.12 -1.08 10.11 22.34 0.23 -0.86 16 24 C 0.06 0.77 11.18 84.69 0.95 1.71 16 25 N -0.48 -10.17 10.36 -195.42 -2.02 -12.20 16 26 C 0.02 0.34 9.97 84.81 0.85 1.19 16 27 C -0.14 -3.12 8.34 22.33 0.19 -2.93 16 28 C -0.04 -1.12 9.58 22.51 0.22 -0.90 16 29 H 0.03 1.53 6.06 -2.39 -0.01 1.51 16 30 H 0.04 1.74 7.79 -2.39 -0.02 1.72 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.09 4.84 5.95 -2.39 -0.01 4.82 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 35 H 0.15 4.06 7.60 -2.91 -0.02 4.04 16 36 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 37 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 38 H 0.18 0.16 8.06 -2.91 -0.02 0.13 16 39 H 0.19 1.32 8.06 -2.91 -0.02 1.30 16 40 H 0.15 3.32 6.20 -2.91 -0.02 3.30 16 41 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 42 H 0.14 3.89 7.64 -2.91 -0.02 3.87 16 Total: -1.00 -70.04 359.08 5.91 -64.13 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 1.04 Total: 17.65 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 5.20 Total: -13.98 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: -1.78 Total: -64.24 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -0.58 Total: -48.34 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -70.04 5.91 -64.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188044092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.734 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds