Wall clock time and date at job start Tue Mar 31 2020 15:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47371 * 2 1 4 4 C 1.53004 * 109.47293 * 120.00485 * 2 1 3 5 5 C 1.53008 * 109.46647 * 304.99902 * 4 2 1 6 6 N 1.46499 * 109.46790 * 179.97438 * 5 4 2 7 7 S 1.65603 * 119.99651 * 164.99810 * 6 5 4 8 8 O 1.42097 * 104.27554 * 181.07088 * 7 6 5 9 9 O 1.42101 * 104.28023 * 308.93154 * 7 6 5 10 10 C 1.81402 * 104.44637 * 65.00289 * 7 6 5 11 11 C 1.53009 * 109.46845 * 179.97438 * 10 7 6 12 12 C 1.50704 * 109.46613 * 179.97438 * 11 10 7 13 13 H 1.07997 * 120.00452 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99507 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00012 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47117 * 60.00095 * 16 14 12 18 18 H 1.48499 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46852 * 300.00087 * 16 14 12 20 20 C 1.50706 * 109.47116 * 239.99921 * 2 1 3 21 21 C 1.38233 * 120.00109 * 269.72529 * 20 2 1 22 22 C 1.38238 * 119.99749 * 179.78525 * 21 20 2 23 23 C 1.38234 * 120.00078 * 0.44989 * 22 21 20 24 24 C 1.38238 * 120.00032 * 359.80374 * 23 22 21 25 25 C 1.38235 * 120.00123 * 359.97438 * 24 23 22 26 26 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47123 * 299.99378 * 1 2 3 28 28 H 1.09000 * 109.47214 * 60.00246 * 1 2 3 29 29 H 0.96691 * 114.00678 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47336 * 64.99698 * 4 2 1 31 31 H 1.08996 * 109.47426 * 185.00299 * 4 2 1 32 32 H 1.08999 * 109.47086 * 299.99949 * 5 4 2 33 33 H 1.08996 * 109.46883 * 60.00065 * 5 4 2 34 34 H 0.96999 * 120.00188 * 345.00440 * 6 5 4 35 35 H 1.08998 * 109.47461 * 299.99385 * 10 7 6 36 36 H 1.08996 * 109.47279 * 60.00040 * 10 7 6 37 37 H 1.08998 * 109.46848 * 300.00078 * 11 10 7 38 38 H 1.09004 * 109.46700 * 60.00395 * 11 10 7 39 39 H 0.97002 * 120.00131 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.99934 * 0.02562 * 21 20 2 41 41 H 1.07999 * 119.99925 * 180.27297 * 22 21 20 42 42 H 1.08002 * 120.00276 * 179.83134 * 23 22 21 43 43 H 1.08000 * 120.00524 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00181 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.4299 -0.0763 2.4953 6 7 1.9178 -0.7674 3.6914 7 16 1.7314 -0.0726 5.1830 8 8 2.3336 -0.9973 6.0781 9 8 2.2522 1.2402 5.0257 10 6 -0.0641 -0.0190 5.4360 11 6 -0.3687 0.6096 6.7974 12 6 -1.8604 0.6547 7.0073 13 1 -2.5247 0.2728 6.2461 14 6 -2.3770 1.1825 8.1715 15 7 -1.5681 1.6470 9.0986 16 14 -4.2260 1.2378 8.4322 17 1 -4.7733 -0.1420 8.3900 18 1 -4.5216 1.8479 9.7533 19 1 -4.8528 2.0519 7.3601 20 6 2.0323 -0.7105 -1.2305 21 6 2.2682 -2.0721 -1.1946 22 6 2.7247 -2.7244 -2.3246 23 6 2.9543 -2.0136 -3.4878 24 6 2.7235 -0.6511 -3.5221 25 6 2.2626 0.0006 -2.3935 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.9703 1.4236 -0.0004 30 1 1.7517 -1.7716 1.2055 31 1 3.1263 -0.6444 1.2952 32 1 1.7183 0.9739 2.5390 33 1 0.3437 -0.1533 2.4494 34 1 2.3501 -1.6319 3.6097 35 1 -0.5244 0.5780 4.6487 36 1 -0.4657 -1.0318 5.4059 37 1 0.0915 0.0123 7.5845 38 1 0.0329 1.6225 6.8279 39 1 -1.9315 2.0187 9.9176 40 1 2.0920 -2.6268 -0.2849 41 1 2.9048 -3.7890 -2.2979 42 1 3.3136 -2.5228 -4.3699 43 1 2.9025 -0.0957 -4.4309 44 1 2.0826 1.0651 -2.4202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188862164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:32 Heat of formation + Delta-G solvation = -113.229739 kcal Electronic energy + Delta-G solvation = -25403.596804 eV Core-core repulsion = 21640.463269 eV Total energy + Delta-G solvation = -3763.133535 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34783 -37.90001 -36.56567 -35.51261 -35.28820 -33.87806 -32.92921 -31.22755 -31.14759 -30.23194 -28.23985 -25.58734 -24.67012 -23.11097 -22.17838 -21.65369 -20.38843 -18.92177 -17.98343 -17.46877 -16.67196 -16.39514 -16.20829 -15.72175 -15.37752 -15.17431 -14.96462 -14.72252 -14.53887 -14.26564 -13.95872 -13.72250 -13.34276 -12.98838 -12.67541 -12.57397 -12.50914 -12.18053 -11.89725 -11.80063 -11.72508 -11.57151 -11.48997 -11.47763 -11.30207 -11.05967 -10.96475 -10.94220 -10.42743 -10.36302 -10.25900 -9.76863 -9.46214 -9.26714 -9.11179 -9.00098 -8.49033 -6.11294 -4.16907 0.81298 0.96324 1.05447 3.14651 3.27889 3.32689 3.34458 3.41765 3.88018 4.15854 4.27225 4.39068 4.44827 4.60189 4.65617 4.69329 4.76730 4.80209 4.92174 5.12379 5.14000 5.23727 5.25446 5.36367 5.45030 5.53679 5.60249 5.65514 5.68888 5.70374 5.73742 5.82110 6.00983 6.04968 6.12460 6.17240 6.22583 6.50158 6.63929 7.09507 7.31401 7.37026 7.37922 7.81365 8.18664 8.86197 9.47665 10.99689 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.002482 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.679000 B =11279.552340 C =11964.746657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.176 3.824 3 O -0.549 6.549 4 C -0.151 4.151 5 C 0.115 3.885 6 N -1.129 6.129 7 S 2.594 3.406 8 O -0.969 6.969 9 O -0.966 6.966 10 C -0.590 4.590 11 C 0.028 3.972 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.057 3.943 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.103 4.103 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.379 0.621 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.410 0.590 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.127 0.873 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.214 -7.580 -25.556 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.134 3.866 3 O -0.355 6.355 4 C -0.190 4.190 5 C -0.011 4.011 6 N -0.887 5.887 7 S 2.691 3.309 8 O -0.959 6.959 9 O -0.956 6.956 10 C -0.723 4.723 11 C -0.011 4.011 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.528 5.528 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.115 4.115 21 C -0.131 4.131 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.121 4.121 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.227 0.773 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.243 0.757 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.237 -6.884 -24.812 27.035 hybrid contribution -0.812 -0.734 -0.201 1.113 sum 7.425 -7.618 -25.014 27.182 Atomic orbital electron populations 1.21875 0.91428 1.02866 1.03786 1.19934 0.95151 0.81691 0.89807 1.86584 1.27037 1.25096 1.96748 1.22535 1.01772 1.00815 0.93892 1.21331 0.98467 0.97572 0.83758 1.55815 1.75916 1.33803 1.23119 1.05505 0.79175 0.73955 0.72238 1.93549 1.75751 1.63892 1.62757 1.93542 1.77752 1.39535 1.84771 1.30442 1.21206 1.10144 1.10518 1.18960 0.99473 0.96246 0.86419 1.20964 0.90544 1.41388 1.03104 0.92110 1.25072 0.98491 0.95080 0.95872 1.69947 1.34900 1.40107 1.07892 0.86525 0.84843 0.78389 0.77478 1.20108 1.21089 1.20075 1.20546 1.00285 0.94450 0.96173 1.21180 0.99147 0.94024 0.98714 1.21170 0.99707 0.99954 0.93131 1.21203 1.00069 0.94515 0.98127 1.21186 0.99709 0.94735 0.98399 1.21056 0.98370 1.00539 0.92115 0.90840 0.90489 0.91605 0.77350 0.89914 0.90460 0.89439 0.91386 0.75684 0.86319 0.86144 0.94852 0.94799 0.92479 0.85557 0.86021 0.86203 0.86061 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.34 37.16 0.31 -0.90 16 2 C 0.18 1.46 0.92 -91.77 -0.08 1.38 16 3 O -0.55 -4.99 11.50 -35.23 -0.41 -5.40 16 4 C -0.15 -1.24 4.09 -26.72 -0.11 -1.35 16 5 C 0.11 1.25 5.54 -4.04 -0.02 1.23 16 6 N -1.13 -13.96 5.89 -10.61 -0.06 -14.02 16 7 S 2.59 45.78 5.46 -107.50 -0.59 45.19 16 8 O -0.97 -19.98 18.08 -57.54 -1.04 -21.02 16 9 O -0.97 -20.07 17.50 -57.54 -1.01 -21.07 16 10 C -0.59 -11.15 6.01 37.16 0.22 -10.93 16 11 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 12 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 13 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 16 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C -0.11 -0.92 4.81 -104.62 -0.50 -1.42 16 21 C -0.11 -0.85 9.14 -39.58 -0.36 -1.21 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 23 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 25 C -0.10 -0.81 9.35 -39.58 -0.37 -1.18 16 26 H 0.07 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.08 0.69 6.34 -51.93 -0.33 0.36 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.38 2.43 9.04 45.56 0.41 2.84 16 30 H 0.08 0.56 6.21 -51.93 -0.32 0.24 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.08 7.38 -51.93 -0.38 0.70 16 33 H 0.07 0.67 6.34 -51.93 -0.33 0.34 16 34 H 0.41 4.15 8.62 -34.47 -0.30 3.86 16 35 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 36 H 0.12 2.04 8.14 -51.93 -0.42 1.62 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 40 H 0.13 0.79 6.05 -52.48 -0.32 0.47 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.97 7.48 -52.49 -0.39 0.58 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -36.18 375.13 -10.12 -46.30 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.73 Total: 4.72 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -2.66 Total: -30.75 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.67 Total: -39.84 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -2.45 Total: -47.49 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 45.78 SS G_CDS: -0.59 Total: 45.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.18 -10.12 -46.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188862164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.926 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds