Wall clock time and date at job start Tue Mar 31 2020 15:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47371 * 2 1 4 4 C 1.53004 * 109.47293 * 120.00485 * 2 1 3 5 5 C 1.53008 * 109.46647 * 304.99902 * 4 2 1 6 6 N 1.46499 * 109.46790 * 179.97438 * 5 4 2 7 7 S 1.65603 * 119.99651 * 164.99810 * 6 5 4 8 8 O 1.42097 * 104.27554 * 181.07088 * 7 6 5 9 9 O 1.42101 * 104.28023 * 308.93154 * 7 6 5 10 10 C 1.81402 * 104.44637 * 65.00289 * 7 6 5 11 11 C 1.53009 * 109.46845 * 179.97438 * 10 7 6 12 12 C 1.50704 * 109.46613 * 179.97438 * 11 10 7 13 13 H 1.07997 * 120.00452 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99507 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00012 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00043 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47117 * 60.00095 * 16 14 12 18 18 H 1.48499 * 109.47099 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.46852 * 300.00087 * 16 14 12 20 20 C 1.50706 * 109.47116 * 239.99921 * 2 1 3 21 21 C 1.38233 * 120.00109 * 269.72529 * 20 2 1 22 22 C 1.38238 * 119.99749 * 179.78525 * 21 20 2 23 23 C 1.38234 * 120.00078 * 0.44989 * 22 21 20 24 24 C 1.38238 * 120.00032 * 359.80374 * 23 22 21 25 25 C 1.38235 * 120.00123 * 359.97438 * 24 23 22 26 26 H 1.09008 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47123 * 299.99378 * 1 2 3 28 28 H 1.09000 * 109.47214 * 60.00246 * 1 2 3 29 29 H 0.96691 * 114.00678 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.47336 * 64.99698 * 4 2 1 31 31 H 1.08996 * 109.47426 * 185.00299 * 4 2 1 32 32 H 1.08999 * 109.47086 * 299.99949 * 5 4 2 33 33 H 1.08996 * 109.46883 * 60.00065 * 5 4 2 34 34 H 0.96999 * 120.00188 * 345.00440 * 6 5 4 35 35 H 1.08998 * 109.47461 * 299.99385 * 10 7 6 36 36 H 1.08996 * 109.47279 * 60.00040 * 10 7 6 37 37 H 1.08998 * 109.46848 * 300.00078 * 11 10 7 38 38 H 1.09004 * 109.46700 * 60.00395 * 11 10 7 39 39 H 0.97002 * 120.00131 * 179.97438 * 15 14 12 40 40 H 1.08004 * 119.99934 * 0.02562 * 21 20 2 41 41 H 1.07999 * 119.99925 * 180.27297 * 22 21 20 42 42 H 1.08002 * 120.00276 * 179.83134 * 23 22 21 43 43 H 1.08000 * 120.00524 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00181 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0401 -0.7214 1.2492 5 6 1.4299 -0.0763 2.4953 6 7 1.9178 -0.7674 3.6914 7 16 1.7314 -0.0726 5.1830 8 8 2.3336 -0.9973 6.0781 9 8 2.2522 1.2402 5.0257 10 6 -0.0641 -0.0190 5.4360 11 6 -0.3687 0.6096 6.7974 12 6 -1.8604 0.6547 7.0073 13 1 -2.5247 0.2728 6.2461 14 6 -2.3770 1.1825 8.1715 15 7 -1.5681 1.6470 9.0986 16 14 -4.2260 1.2378 8.4322 17 1 -4.7733 -0.1420 8.3900 18 1 -4.5216 1.8479 9.7533 19 1 -4.8528 2.0519 7.3601 20 6 2.0323 -0.7105 -1.2305 21 6 2.2682 -2.0721 -1.1946 22 6 2.7247 -2.7244 -2.3246 23 6 2.9543 -2.0136 -3.4878 24 6 2.7235 -0.6511 -3.5221 25 6 2.2626 0.0006 -2.3935 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 2.9703 1.4236 -0.0004 30 1 1.7517 -1.7716 1.2055 31 1 3.1263 -0.6444 1.2952 32 1 1.7183 0.9739 2.5390 33 1 0.3437 -0.1533 2.4494 34 1 2.3501 -1.6319 3.6097 35 1 -0.5244 0.5780 4.6487 36 1 -0.4657 -1.0318 5.4059 37 1 0.0915 0.0123 7.5845 38 1 0.0329 1.6225 6.8279 39 1 -1.9315 2.0187 9.9176 40 1 2.0920 -2.6268 -0.2849 41 1 2.9048 -3.7890 -2.2979 42 1 3.3136 -2.5228 -4.3699 43 1 2.9025 -0.0957 -4.4309 44 1 2.0826 1.0651 -2.4202 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188862164.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:31 Heat of formation + Delta-G solvation = -140.756146 kcal Electronic energy + Delta-G solvation = -25404.790438 eV Core-core repulsion = 21640.463269 eV Total energy + Delta-G solvation = -3764.327170 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.92542 -38.53726 -38.10824 -37.00481 -36.30537 -35.87729 -33.62073 -33.10736 -31.74482 -30.87191 -28.96680 -27.57275 -25.39730 -23.67569 -23.58121 -22.78866 -21.05886 -20.26455 -19.09047 -18.62418 -18.18369 -17.35967 -17.15410 -17.03558 -16.51843 -16.42310 -16.06464 -15.73641 -15.47399 -15.12737 -15.00664 -14.61247 -14.44997 -14.24935 -13.72106 -13.65554 -13.45739 -13.22292 -13.19387 -13.09495 -12.92590 -12.89556 -12.78280 -12.65628 -12.47020 -12.31372 -12.20463 -12.14451 -11.96069 -11.71123 -11.54731 -11.15078 -10.92082 -10.62849 -10.27908 -9.79053 -9.64936 -8.24833 -6.38803 -0.64893 0.43107 0.52955 1.41396 1.44944 1.52991 1.88051 2.38903 2.83129 2.88765 3.08451 3.24741 3.34154 3.57357 3.77627 3.96997 4.04933 4.11374 4.16027 4.19350 4.23768 4.32664 4.44891 4.57265 4.61077 4.72627 4.73666 4.78893 4.92979 4.97283 5.02528 5.16704 5.17171 5.23312 5.29332 5.30352 5.35869 5.60257 5.66195 5.68665 5.69492 6.07434 6.13486 6.18023 6.74825 6.82827 7.31202 8.87195 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019431 B = 0.002482 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.679000 B =11279.552340 C =11964.746657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.179 3.821 3 O -0.565 6.565 4 C -0.144 4.144 5 C 0.105 3.895 6 N -1.106 6.106 7 S 2.622 3.378 8 O -1.000 7.000 9 O -0.999 6.999 10 C -0.589 4.589 11 C 0.019 3.981 12 C -0.539 4.539 13 H 0.077 0.923 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.263 1.263 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.129 4.129 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.116 4.116 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.388 0.612 30 H 0.104 0.896 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.425 0.575 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.006 0.994 38 H 0.006 0.994 39 H 0.267 0.733 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.278 -9.197 -27.637 30.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.137 3.863 3 O -0.373 6.373 4 C -0.183 4.183 5 C -0.020 4.020 6 N -0.869 5.869 7 S 2.718 3.282 8 O -0.990 6.990 9 O -0.989 6.989 10 C -0.721 4.721 11 C -0.019 4.019 12 C -0.578 4.578 13 H 0.095 0.905 14 C -0.204 4.204 15 N -0.574 5.574 16 Si 0.798 3.202 17 H -0.187 1.187 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.121 4.121 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.134 4.134 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.237 0.763 30 H 0.122 0.878 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.262 0.738 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.025 0.975 38 H 0.024 0.976 39 H 0.076 0.924 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.306 -8.516 -26.904 29.150 hybrid contribution -0.452 -0.241 0.340 0.615 sum 6.854 -8.757 -26.564 28.798 Atomic orbital electron populations 1.21935 0.91692 1.03594 1.03171 1.19908 0.94998 0.81367 0.90011 1.86558 1.28068 1.25865 1.96793 1.22510 1.01909 1.01691 0.92214 1.21578 0.99685 0.96900 0.83885 1.55246 1.75677 1.34388 1.21558 1.04364 0.78038 0.72948 0.72824 1.93500 1.76160 1.64492 1.64885 1.93501 1.78096 1.41692 1.85632 1.30340 1.23144 1.11339 1.07256 1.18822 0.98674 0.94877 0.89559 1.21498 0.91831 1.40905 1.03532 0.90531 1.26134 1.03961 0.94628 0.95653 1.70101 1.37370 1.41366 1.08577 0.85363 0.78326 0.79052 0.77505 1.18724 1.21073 1.18778 1.20524 1.00842 0.94815 0.95944 1.21386 0.99129 0.93847 0.99526 1.21464 0.99260 1.00969 0.93008 1.21499 0.99678 0.94511 0.98906 1.21424 0.99489 0.95230 0.98736 1.21146 0.99012 1.00602 0.92635 0.89460 0.91137 0.92196 0.76278 0.87801 0.89984 0.91047 0.89820 0.73816 0.84075 0.83724 0.97530 0.97594 0.92431 0.84242 0.84296 0.84422 0.84709 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.34 71.98 0.60 -1.65 16 2 C 0.18 2.69 0.92 -11.54 -0.01 2.68 16 3 O -0.57 -9.86 11.50 -148.98 -1.71 -11.58 16 4 C -0.14 -2.01 4.09 30.60 0.13 -1.89 16 5 C 0.11 2.07 5.54 86.38 0.48 2.55 16 6 N -1.11 -25.13 5.89 -187.48 -1.10 -26.24 16 7 S 2.62 91.50 5.46 -56.49 -0.31 91.19 16 8 O -1.00 -41.18 18.08 -127.65 -2.31 -43.49 16 9 O -1.00 -41.91 17.50 -127.65 -2.23 -44.15 16 10 C -0.59 -21.79 6.01 71.99 0.43 -21.35 16 11 C 0.02 1.02 4.98 29.85 0.15 1.17 16 12 C -0.54 -29.79 9.11 25.60 0.23 -29.56 16 13 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 14 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 15 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 16 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 20 C -0.12 -1.75 4.81 -19.86 -0.10 -1.84 16 21 C -0.12 -1.53 9.14 22.27 0.20 -1.33 16 22 C -0.13 -1.52 10.05 22.27 0.22 -1.29 16 23 C -0.13 -1.50 10.05 22.27 0.22 -1.28 16 24 C -0.13 -1.69 10.05 22.27 0.22 -1.47 16 25 C -0.12 -1.72 9.35 22.27 0.21 -1.51 16 26 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.07 1.15 6.34 -2.39 -0.02 1.14 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.39 4.76 9.04 -74.06 -0.67 4.09 16 30 H 0.10 1.03 6.21 -2.39 -0.01 1.01 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.69 7.38 -2.39 -0.02 1.67 16 33 H 0.08 1.42 6.34 -2.39 -0.02 1.41 16 34 H 0.43 7.46 8.62 -96.74 -0.83 6.63 16 35 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 36 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 37 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 40 H 0.14 1.30 6.05 -2.91 -0.02 1.28 16 41 H 0.14 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.14 1.04 8.06 -2.91 -0.02 1.01 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.13 1.86 7.48 -2.91 -0.02 1.83 16 Total: -1.00 -79.04 375.13 -2.38 -81.42 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: -0.48 Total: 21.00 kcal Atomic # 6 Polarization: -60.08 SS G_CDS: 3.46 Total: -56.63 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -0.82 Total: -83.08 kcal Atomic # 8 Polarization: -92.96 SS G_CDS: -6.25 Total: -99.21 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 91.50 SS G_CDS: -0.31 Total: 91.19 kcal Total: -79.04 -2.38 -81.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188862164.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.332 kcal (2) G-P(sol) polarization free energy of solvation -79.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds