Wall clock time and date at job start Tue Mar 31 2020 15:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47662 * 2 1 4 4 C 1.53001 * 109.46889 * 239.99723 * 2 1 3 5 5 C 1.52996 * 109.47015 * 60.00438 * 4 2 1 6 6 N 1.46502 * 109.46998 * 180.02562 * 5 4 2 7 7 S 1.65602 * 120.00111 * 164.99950 * 6 5 4 8 8 O 1.42096 * 104.27891 * 181.06420 * 7 6 5 9 9 O 1.42096 * 104.27562 * 308.92659 * 7 6 5 10 10 C 1.81399 * 104.44962 * 64.99525 * 7 6 5 11 11 C 1.53005 * 109.47039 * 180.02562 * 10 7 6 12 12 C 1.50702 * 109.46979 * 179.97438 * 11 10 7 13 13 H 1.08007 * 120.00136 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99817 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99882 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99882 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47021 * 60.00293 * 16 14 12 18 18 H 1.48499 * 109.46790 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47188 * 300.00068 * 16 14 12 20 20 C 1.50706 * 109.47383 * 120.00068 * 2 1 3 21 21 C 1.38237 * 119.99744 * 270.00236 * 20 2 1 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 2 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00223 * 90.01446 * 20 2 1 26 26 H 1.09000 * 109.47055 * 300.00084 * 1 2 3 27 27 H 1.09001 * 109.47313 * 59.99626 * 1 2 3 28 28 H 1.09000 * 109.47547 * 180.02562 * 1 2 3 29 29 H 0.96699 * 114.00452 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46958 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47399 * 300.00011 * 4 2 1 32 32 H 1.09001 * 109.47028 * 299.99676 * 5 4 2 33 33 H 1.08996 * 109.47386 * 59.99564 * 5 4 2 34 34 H 0.97004 * 119.99833 * 344.98830 * 6 5 4 35 35 H 1.08999 * 109.47027 * 300.00028 * 10 7 6 36 36 H 1.08998 * 109.47205 * 60.00079 * 10 7 6 37 37 H 1.08999 * 109.47039 * 299.99782 * 11 10 7 38 38 H 1.08998 * 109.47252 * 59.99869 * 11 10 7 39 39 H 0.97005 * 119.99783 * 179.97438 * 15 14 12 40 40 H 1.08005 * 120.00088 * 359.97438 * 21 20 2 41 41 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.07998 * 119.99975 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -0.0001 -2.4984 6 7 2.0177 -0.6911 -3.6946 7 16 1.3375 -0.3722 -5.1704 8 8 2.0323 -1.2264 -6.0685 9 8 -0.0589 -0.5192 -4.9517 10 6 1.7517 1.3639 -5.4941 11 6 1.1708 1.7833 -6.8460 12 6 1.5145 3.2259 -7.1147 13 1 2.0900 3.7873 -6.3935 14 6 1.0950 3.8286 -8.2816 15 7 0.3946 3.1449 -9.1600 16 14 1.5216 5.6165 -8.6149 17 1 2.9976 5.7771 -8.6387 18 1 0.9577 6.0235 -9.9270 19 1 0.9479 6.4703 -7.5438 20 6 2.0323 -0.7104 1.2305 21 6 2.2627 0.0005 2.3934 22 6 2.7240 -0.6510 3.5219 23 6 2.9540 -2.0137 3.4878 24 6 2.7283 -2.7238 2.3235 25 6 2.2631 -2.0730 1.1962 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 2.9704 1.4236 -0.0004 30 1 3.1299 -0.7217 -1.2490 31 1 1.6766 -1.7489 -1.2492 32 1 0.4399 0.0000 -2.4984 33 1 1.8932 1.0276 -2.4985 34 1 2.7393 -1.3354 -3.6222 35 1 1.3306 1.9906 -4.7079 36 1 2.8352 1.4818 -5.5115 37 1 1.5916 1.1567 -7.6324 38 1 0.0874 1.6655 -6.8283 39 1 0.0992 3.5691 -9.9808 40 1 2.0830 1.0652 2.4200 41 1 2.9044 -0.0955 4.4303 42 1 3.3140 -2.5227 4.3697 43 1 2.9121 -3.7877 2.2956 44 1 2.0837 -2.6283 0.2875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188862187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:35 Heat of formation + Delta-G solvation = -114.295018 kcal Electronic energy + Delta-G solvation = -25398.699791 eV Core-core repulsion = 21635.520062 eV Total energy + Delta-G solvation = -3763.179729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.34373 -37.90607 -36.57272 -35.51177 -35.27588 -33.87282 -32.93816 -31.22456 -31.14201 -30.21517 -28.26472 -25.58128 -24.62707 -23.11128 -22.17759 -21.64997 -20.39419 -18.93603 -17.99285 -17.46323 -16.68050 -16.39618 -16.11665 -15.74385 -15.40984 -15.21434 -14.94717 -14.70236 -14.54033 -14.24887 -13.89725 -13.75932 -13.34510 -13.05337 -12.65103 -12.55751 -12.50969 -12.08458 -11.91989 -11.85426 -11.71398 -11.57992 -11.50616 -11.45265 -11.33638 -11.05330 -10.96016 -10.93910 -10.42752 -10.35747 -10.25453 -9.76501 -9.46405 -9.26525 -9.11846 -8.99092 -8.48529 -6.10851 -4.16344 0.81271 0.96396 1.05597 3.14290 3.28523 3.33192 3.35125 3.41778 3.87577 4.15165 4.27791 4.39572 4.44117 4.63713 4.66362 4.69195 4.72520 4.81111 4.94399 5.12753 5.15267 5.24198 5.25406 5.37727 5.45790 5.54611 5.59871 5.68054 5.70228 5.71013 5.75293 5.81505 6.02168 6.05304 6.12612 6.17337 6.23024 6.51095 6.64076 7.09380 7.31767 7.35041 7.38162 7.81993 8.19263 8.86789 9.48214 11.00133 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002499 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.035823 B =11201.681157 C =12120.287392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.176 3.824 3 O -0.549 6.549 4 C -0.151 4.151 5 C 0.116 3.884 6 N -1.130 6.130 7 S 2.594 3.406 8 O -0.969 6.969 9 O -0.967 6.967 10 C -0.589 4.589 11 C 0.028 3.972 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.057 3.943 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.114 4.114 21 C -0.103 4.103 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.122 4.122 25 C -0.112 4.112 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.378 0.622 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.411 0.589 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.265 0.735 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.698 -9.499 25.635 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.135 3.865 3 O -0.354 6.354 4 C -0.190 4.190 5 C -0.010 4.010 6 N -0.887 5.887 7 S 2.691 3.309 8 O -0.959 6.959 9 O -0.957 6.957 10 C -0.723 4.723 11 C -0.011 4.011 12 C -0.560 4.560 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.115 4.115 21 C -0.121 4.121 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.140 4.140 25 C -0.130 4.130 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.226 0.774 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.091 0.909 34 H 0.243 0.757 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.301 -9.885 24.938 27.169 hybrid contribution 1.529 1.047 0.125 1.857 sum 5.830 -8.838 25.064 27.208 Atomic orbital electron populations 1.21867 0.91377 1.02950 1.03767 1.19938 0.95186 0.81607 0.89811 1.86592 1.26932 1.25152 1.96761 1.22517 1.01795 1.00778 0.93894 1.21291 1.00098 0.95984 0.83675 1.55813 1.52887 1.56265 1.23707 1.05496 0.74378 0.78677 0.72302 1.93549 1.74882 1.64696 1.62820 1.93535 1.31591 1.86377 1.84215 1.30437 1.10896 1.20332 1.10608 1.18959 0.96729 0.98810 0.86606 1.20969 1.35311 0.95295 1.04392 0.92096 1.25073 0.94926 0.98525 0.96001 1.69949 1.36421 1.36845 1.09663 0.86523 0.78743 0.84393 0.77567 1.20104 1.21099 1.20066 1.20541 1.00312 0.94430 0.96170 1.21053 0.98382 1.00541 0.92100 1.21184 0.99732 0.94724 0.98407 1.21201 1.00091 0.94520 0.98092 1.21169 0.99676 0.99976 0.93143 1.21172 0.99051 0.94021 0.98771 0.91610 0.90479 0.90835 0.77446 0.90609 0.89818 0.89904 0.90931 0.75670 0.86255 0.86147 0.94865 0.94810 0.92490 0.85287 0.86063 0.86206 0.86023 0.85592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.47 37.15 0.31 -0.96 16 2 C 0.18 1.46 0.92 -91.77 -0.08 1.38 16 3 O -0.55 -4.73 11.29 -35.23 -0.40 -5.12 16 4 C -0.15 -1.24 3.90 -26.73 -0.10 -1.34 16 5 C 0.12 1.26 5.63 -4.04 -0.02 1.24 16 6 N -1.13 -13.97 5.89 -10.61 -0.06 -14.03 16 7 S 2.59 45.74 5.46 -107.50 -0.59 45.15 16 8 O -0.97 -19.98 18.08 -57.54 -1.04 -21.02 16 9 O -0.97 -19.92 17.50 -57.54 -1.01 -20.92 16 10 C -0.59 -11.21 6.01 37.16 0.22 -10.99 16 11 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 12 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 13 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 16 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 C -0.11 -0.92 4.81 -104.62 -0.50 -1.42 16 21 C -0.10 -0.81 9.35 -39.58 -0.37 -1.18 16 22 C -0.12 -0.88 10.05 -39.58 -0.40 -1.27 16 23 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 25 C -0.11 -0.86 9.14 -39.58 -0.36 -1.22 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.74 6.43 -51.93 -0.33 0.41 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.38 2.17 9.04 45.56 0.41 2.58 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.64 6.51 -51.93 -0.34 0.30 16 32 H 0.08 0.98 5.98 -51.93 -0.31 0.67 16 33 H 0.07 0.75 7.68 -51.93 -0.40 0.35 16 34 H 0.41 4.17 8.62 -34.47 -0.30 3.87 16 35 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 36 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.13 0.96 7.48 -52.48 -0.39 0.57 16 41 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.13 0.83 6.17 -52.49 -0.32 0.50 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -36.02 375.40 -10.12 -46.15 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.75 Total: 4.62 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: -2.65 Total: -30.90 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.67 Total: -39.89 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -2.44 Total: -47.06 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 45.74 SS G_CDS: -0.59 Total: 45.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.02 -10.12 -46.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188862187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.146 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds