Wall clock time and date at job start Tue Mar 31 2020 15:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42900 * 109.47662 * 2 1 4 4 C 1.53001 * 109.46889 * 239.99723 * 2 1 3 5 5 C 1.52996 * 109.47015 * 60.00438 * 4 2 1 6 6 N 1.46502 * 109.46998 * 180.02562 * 5 4 2 7 7 S 1.65602 * 120.00111 * 164.99950 * 6 5 4 8 8 O 1.42096 * 104.27891 * 181.06420 * 7 6 5 9 9 O 1.42096 * 104.27562 * 308.92659 * 7 6 5 10 10 C 1.81399 * 104.44962 * 64.99525 * 7 6 5 11 11 C 1.53005 * 109.47039 * 180.02562 * 10 7 6 12 12 C 1.50702 * 109.46979 * 179.97438 * 11 10 7 13 13 H 1.08007 * 120.00136 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99817 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99882 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99882 * 180.02562 * 14 12 11 17 17 H 1.48495 * 109.47021 * 60.00293 * 16 14 12 18 18 H 1.48499 * 109.46790 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47188 * 300.00068 * 16 14 12 20 20 C 1.50706 * 109.47383 * 120.00068 * 2 1 3 21 21 C 1.38237 * 119.99744 * 270.00236 * 20 2 1 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 2 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00223 * 90.01446 * 20 2 1 26 26 H 1.09000 * 109.47055 * 300.00084 * 1 2 3 27 27 H 1.09001 * 109.47313 * 59.99626 * 1 2 3 28 28 H 1.09000 * 109.47547 * 180.02562 * 1 2 3 29 29 H 0.96699 * 114.00452 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46958 * 180.02562 * 4 2 1 31 31 H 1.08996 * 109.47399 * 300.00011 * 4 2 1 32 32 H 1.09001 * 109.47028 * 299.99676 * 5 4 2 33 33 H 1.08996 * 109.47386 * 59.99564 * 5 4 2 34 34 H 0.97004 * 119.99833 * 344.98830 * 6 5 4 35 35 H 1.08999 * 109.47027 * 300.00028 * 10 7 6 36 36 H 1.08998 * 109.47205 * 60.00079 * 10 7 6 37 37 H 1.08999 * 109.47039 * 299.99782 * 11 10 7 38 38 H 1.08998 * 109.47252 * 59.99869 * 11 10 7 39 39 H 0.97005 * 119.99783 * 179.97438 * 15 14 12 40 40 H 1.08005 * 120.00088 * 359.97438 * 21 20 2 41 41 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 43 43 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 44 44 H 1.07998 * 119.99975 * 0.02562 * 25 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -0.0001 -2.4984 6 7 2.0177 -0.6911 -3.6946 7 16 1.3375 -0.3722 -5.1704 8 8 2.0323 -1.2264 -6.0685 9 8 -0.0589 -0.5192 -4.9517 10 6 1.7517 1.3639 -5.4941 11 6 1.1708 1.7833 -6.8460 12 6 1.5145 3.2259 -7.1147 13 1 2.0900 3.7873 -6.3935 14 6 1.0950 3.8286 -8.2816 15 7 0.3946 3.1449 -9.1600 16 14 1.5216 5.6165 -8.6149 17 1 2.9976 5.7771 -8.6387 18 1 0.9577 6.0235 -9.9270 19 1 0.9479 6.4703 -7.5438 20 6 2.0323 -0.7104 1.2305 21 6 2.2627 0.0005 2.3934 22 6 2.7240 -0.6510 3.5219 23 6 2.9540 -2.0137 3.4878 24 6 2.7283 -2.7238 2.3235 25 6 2.2631 -2.0730 1.1962 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 2.9704 1.4236 -0.0004 30 1 3.1299 -0.7217 -1.2490 31 1 1.6766 -1.7489 -1.2492 32 1 0.4399 0.0000 -2.4984 33 1 1.8932 1.0276 -2.4985 34 1 2.7393 -1.3354 -3.6222 35 1 1.3306 1.9906 -4.7079 36 1 2.8352 1.4818 -5.5115 37 1 1.5916 1.1567 -7.6324 38 1 0.0874 1.6655 -6.8283 39 1 0.0992 3.5691 -9.9808 40 1 2.0830 1.0652 2.4200 41 1 2.9044 -0.0955 4.4303 42 1 3.3140 -2.5227 4.3697 43 1 2.9121 -3.7877 2.2956 44 1 2.0837 -2.6283 0.2875 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188862187.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:35 Heat of formation + Delta-G solvation = -141.569683 kcal Electronic energy + Delta-G solvation = -25399.882509 eV Core-core repulsion = 21635.520062 eV Total energy + Delta-G solvation = -3764.362447 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.92257 -38.54047 -38.11307 -37.01014 -36.28212 -35.87999 -33.61708 -33.10933 -31.74497 -30.86117 -29.01854 -27.57578 -25.36101 -23.68579 -23.58006 -22.78960 -21.05756 -20.28203 -19.10027 -18.63040 -18.17800 -17.32654 -17.17160 -17.01871 -16.52181 -16.31926 -16.20163 -15.70550 -15.49746 -15.16519 -14.92549 -14.60503 -14.44552 -14.27412 -13.75311 -13.70104 -13.41732 -13.25353 -13.19621 -13.10224 -12.95794 -12.89819 -12.79359 -12.56395 -12.43500 -12.42315 -12.20925 -12.15021 -11.95063 -11.72248 -11.55423 -11.16603 -10.89395 -10.63082 -10.29566 -9.79215 -9.65092 -8.25122 -6.39032 -0.65163 0.42845 0.52813 1.41188 1.44757 1.52827 1.87475 2.38743 2.82370 2.88449 3.08094 3.24426 3.34191 3.56079 3.76847 3.99312 4.03442 4.11881 4.15370 4.19082 4.24244 4.33562 4.42136 4.57969 4.61390 4.71542 4.73821 4.78479 4.91543 4.95121 5.03502 5.15557 5.17754 5.22648 5.29079 5.30091 5.33096 5.60376 5.66080 5.68859 5.69231 6.07345 6.13306 6.17367 6.74428 6.86108 7.30915 8.86872 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019769 B = 0.002499 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.035823 B =11201.681157 C =12120.287392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.182 3.818 3 O -0.561 6.561 4 C -0.144 4.144 5 C 0.106 3.894 6 N -1.107 6.107 7 S 2.623 3.377 8 O -1.000 7.000 9 O -0.998 6.998 10 C -0.589 4.589 11 C 0.020 3.980 12 C -0.539 4.539 13 H 0.075 0.925 14 C -0.005 4.005 15 N -0.934 5.934 16 Si 0.974 3.026 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.263 1.263 20 C -0.120 4.120 21 C -0.114 4.114 22 C -0.130 4.130 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.122 4.122 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.390 0.610 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.425 0.575 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.007 0.993 38 H 0.007 0.993 39 H 0.267 0.733 40 H 0.128 0.872 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.286 -9.120 27.711 30.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.140 3.860 3 O -0.369 6.369 4 C -0.183 4.183 5 C -0.020 4.020 6 N -0.869 5.869 7 S 2.719 3.281 8 O -0.990 6.990 9 O -0.988 6.988 10 C -0.721 4.721 11 C -0.019 4.019 12 C -0.578 4.578 13 H 0.094 0.906 14 C -0.203 4.203 15 N -0.574 5.574 16 Si 0.798 3.202 17 H -0.188 1.188 18 H -0.210 1.210 19 H -0.188 1.188 20 C -0.121 4.121 21 C -0.132 4.132 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.140 4.140 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.240 0.760 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.262 0.738 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.146 0.854 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.915 -9.504 27.022 29.249 hybrid contribution 1.037 0.871 -0.412 1.416 sum 6.952 -8.633 26.610 28.826 Atomic orbital electron populations 1.21914 0.92285 1.03213 1.03055 1.19826 0.94553 0.81577 0.90023 1.86565 1.28211 1.25365 1.96781 1.22489 1.02846 1.00773 0.92197 1.21536 0.99756 0.96840 0.83837 1.55250 1.53065 1.56404 1.22159 1.04332 0.73478 0.77424 0.72833 1.93501 1.75311 1.65270 1.64925 1.93496 1.33832 1.86455 1.85008 1.30342 1.12084 1.22266 1.07426 1.18821 0.95327 0.98129 0.89648 1.21495 1.35087 0.96435 1.04788 0.90643 1.26130 0.94718 1.03643 0.95857 1.70100 1.37874 1.39086 1.10312 0.85363 0.79040 0.78314 0.77532 1.18759 1.21005 1.18802 1.20507 1.00853 0.94692 0.96017 1.21151 0.98868 1.00681 0.92489 1.21432 0.99432 0.95163 0.98789 1.21496 0.99676 0.94568 0.98791 1.21447 0.99301 1.00939 0.93053 1.21352 0.99195 0.93957 0.99479 0.91920 0.91567 0.90169 0.76049 0.88822 0.88988 0.90969 0.89931 0.73828 0.84173 0.83894 0.97516 0.97511 0.92415 0.85375 0.84603 0.84405 0.84434 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.47 71.98 0.61 -1.91 16 2 C 0.18 2.73 0.92 -11.54 -0.01 2.71 16 3 O -0.56 -8.76 11.29 -148.98 -1.68 -10.44 16 4 C -0.14 -2.01 3.90 30.59 0.12 -1.89 16 5 C 0.11 2.10 5.63 86.38 0.49 2.58 16 6 N -1.11 -25.22 5.89 -187.50 -1.10 -26.33 16 7 S 2.62 91.50 5.46 -56.49 -0.31 91.19 16 8 O -1.00 -41.16 18.08 -127.65 -2.31 -43.47 16 9 O -1.00 -41.39 17.50 -127.65 -2.23 -43.62 16 10 C -0.59 -22.05 6.01 71.98 0.43 -21.61 16 11 C 0.02 1.03 4.98 29.85 0.15 1.18 16 12 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 13 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 14 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 15 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 16 Si 0.97 43.47 29.54 68.60 2.03 45.50 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 C -0.12 -1.74 4.81 -19.86 -0.10 -1.83 16 21 C -0.11 -1.64 9.35 22.27 0.21 -1.43 16 22 C -0.13 -1.64 10.05 22.27 0.22 -1.42 16 23 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 24 C -0.13 -1.57 10.05 22.27 0.22 -1.34 16 25 C -0.12 -1.62 9.14 22.27 0.20 -1.42 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.26 6.43 -2.39 -0.02 1.24 16 28 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 29 H 0.39 3.71 9.04 -74.06 -0.67 3.04 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.16 6.51 -2.39 -0.02 1.14 16 32 H 0.07 1.63 5.98 -2.39 -0.01 1.62 16 33 H 0.08 1.50 7.68 -2.39 -0.02 1.49 16 34 H 0.43 7.54 8.62 -96.74 -0.83 6.70 16 35 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 36 H 0.14 4.65 8.14 -2.39 -0.02 4.63 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 40 H 0.13 1.79 7.48 -2.91 -0.02 1.76 16 41 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 42 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 43 H 0.14 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.14 1.46 6.17 -2.91 -0.02 1.44 16 Total: -1.00 -78.39 375.40 -2.34 -80.73 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.48 Total: 20.58 kcal Atomic # 6 Polarization: -60.71 SS G_CDS: 3.47 Total: -57.24 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -0.82 Total: -83.21 kcal Atomic # 8 Polarization: -91.31 SS G_CDS: -6.22 Total: -97.54 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 91.50 SS G_CDS: -0.31 Total: 91.19 kcal Total: -78.39 -2.34 -80.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188862187.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.843 kcal (2) G-P(sol) polarization free energy of solvation -78.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds