Wall clock time and date at job start Tue Mar 31 2020 14:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47222 * 2 1 4 4 C 1.38101 * 120.00916 * 265.18915 * 3 2 1 5 5 C 1.38711 * 120.01463 * 180.25583 * 4 3 2 6 6 O 1.35970 * 119.98163 * 179.76669 * 5 4 3 7 7 C 1.38739 * 120.03350 * 359.78688 * 5 4 3 8 8 C 1.38058 * 120.01679 * 359.97438 * 7 5 4 9 9 C 1.38843 * 120.00717 * 84.99598 * 3 2 1 10 10 N 1.40038 * 120.01438 * 0.02562 * 9 3 2 11 11 C 1.34779 * 119.99637 * 145.06766 * 10 9 3 12 12 O 1.21608 * 120.00340 * 4.40573 * 11 10 9 13 13 C 1.47508 * 119.99685 * 184.40503 * 11 10 9 14 14 C 1.39674 * 120.20028 * 0.02562 * 13 11 10 15 15 C 1.37825 * 119.91998 * 180.23275 * 14 13 11 16 16 C 1.38570 * 120.32619 * 359.48615 * 15 14 13 17 17 C 1.38033 * 120.40268 * 0.51303 * 16 15 14 18 18 C 1.38837 * 120.07204 * 359.74783 * 17 16 15 19 19 O 1.35516 * 120.16490 * 180.02562 * 18 17 16 20 20 C 1.34816 * 116.99761 * 354.56588 * 19 18 17 21 21 H 1.08006 * 120.00011 * 5.03652 * 20 19 18 22 22 C 1.38696 * 120.00078 * 185.03632 * 20 19 18 23 23 N 1.31515 * 120.00066 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99837 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47373 * 89.99898 * 24 22 20 26 26 H 1.48500 * 109.46710 * 209.99642 * 24 22 20 27 27 H 1.48502 * 109.46925 * 329.99577 * 24 22 20 28 28 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47115 * 299.99977 * 1 2 3 30 30 H 1.08997 * 109.47310 * 59.99975 * 1 2 3 31 31 H 1.09005 * 109.47608 * 240.00215 * 2 1 3 32 32 H 1.08997 * 109.47310 * 120.00024 * 2 1 3 33 33 H 1.08002 * 119.99351 * 0.02562 * 4 3 2 34 34 H 0.96709 * 114.00009 * 270.01954 * 6 5 4 35 35 H 1.08003 * 119.99269 * 179.97438 * 7 5 4 36 36 H 1.08001 * 120.00764 * 179.97438 * 8 7 5 37 37 H 0.96998 * 120.00108 * 325.06137 * 10 9 3 38 38 H 1.08009 * 120.04097 * 359.94701 * 14 13 11 39 39 H 1.08006 * 119.83846 * 179.74673 * 15 14 13 40 40 H 1.07994 * 119.80396 * 180.28517 * 16 15 14 41 41 H 1.07992 * 119.96486 * 179.77123 * 17 16 15 42 42 H 0.96999 * 120.00329 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3571 2.0386 -1.1917 5 6 2.8246 3.3446 -1.1914 6 8 3.1487 3.9505 -2.3646 7 6 2.9620 4.0326 0.0055 8 6 2.6330 3.4180 1.1972 9 6 2.1649 2.1104 1.1977 10 7 1.8324 1.4858 2.4062 11 6 2.5371 1.7591 3.5221 12 8 3.4090 2.6065 3.4986 13 6 2.2507 1.0301 4.7721 14 6 1.2506 0.0556 4.8038 15 6 0.9846 -0.6186 5.9761 16 6 1.7119 -0.3422 7.1227 17 6 2.7033 0.6181 7.1066 18 6 2.9816 1.3111 5.9361 19 8 3.9548 2.2540 5.9180 20 6 4.5399 2.5523 7.0954 21 1 4.2856 1.9909 7.9823 22 6 5.4685 3.5800 7.1676 23 7 6.0389 3.8713 8.3163 24 14 5.9077 4.5514 5.6337 25 1 4.9967 5.7173 5.5082 26 1 7.3105 5.0280 5.7345 27 1 5.7653 3.6810 4.4390 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.2507 1.5035 -2.1238 34 1 4.0711 3.8289 -2.6285 35 1 3.3264 5.0493 0.0050 36 1 2.7404 3.9537 2.1288 37 1 1.0950 0.8566 2.4401 38 1 0.6832 -0.1661 3.9119 39 1 0.2081 -1.3690 6.0002 40 1 1.4995 -0.8788 8.0355 41 1 3.2633 0.8304 8.0052 42 1 6.6880 4.5903 8.3669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191041917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:47 Heat of formation + Delta-G solvation = -51.031285 kcal Electronic energy + Delta-G solvation = -27382.776464 eV Core-core repulsion = 23486.896105 eV Total energy + Delta-G solvation = -3895.880359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65705 -39.54053 -38.43519 -36.96494 -36.61962 -34.09834 -33.78910 -32.53472 -30.94579 -29.78268 -29.30321 -28.16154 -25.41076 -24.16953 -23.79131 -22.51774 -21.46487 -20.98073 -20.16998 -18.32589 -18.02322 -17.98804 -17.08367 -16.60344 -15.75675 -15.38395 -15.02250 -14.74985 -14.45129 -14.37246 -14.28641 -14.04685 -13.83552 -13.69758 -13.59490 -13.11654 -12.99093 -12.49923 -12.45114 -12.29086 -12.24230 -11.92874 -11.53234 -11.49928 -11.35487 -11.16234 -10.93348 -10.79049 -10.52665 -10.12791 -9.98152 -9.68210 -9.18880 -8.96371 -8.77619 -8.52170 -7.86096 -7.56310 -6.54626 -4.19891 1.13915 1.36043 1.52155 2.09652 3.25054 3.28357 3.29994 3.33443 3.59849 3.71270 4.19329 4.28374 4.40896 4.62404 4.64941 4.77769 4.98793 5.01546 5.06786 5.14627 5.25874 5.27085 5.37031 5.48602 5.55130 5.63712 5.71431 5.74025 5.85430 5.93818 5.98979 6.06022 6.17080 6.26886 6.41154 6.44512 6.48744 6.58791 6.73061 6.90505 7.02123 7.05801 7.38480 7.57027 7.61824 7.71296 7.86649 8.61470 8.80167 9.41716 10.50166 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.004553 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.589885 B = 6148.655641 C = 8510.740032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.101 4.101 4 C -0.125 4.125 5 C 0.079 3.921 6 O -0.501 6.501 7 C -0.129 4.129 8 C -0.104 4.104 9 C 0.158 3.842 10 N -0.680 5.680 11 C 0.560 3.440 12 O -0.499 6.499 13 C -0.230 4.230 14 C -0.040 4.040 15 C -0.219 4.219 16 C -0.048 4.048 17 C -0.225 4.225 18 C 0.203 3.797 19 O -0.164 6.164 20 C -0.397 4.397 21 H 0.109 0.891 22 C 0.073 3.927 23 N -0.866 5.866 24 Si 0.899 3.101 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.238 1.238 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.127 0.873 34 H 0.385 0.615 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.405 0.595 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.115 0.885 41 H 0.140 0.860 42 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.761 -7.473 -15.335 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.144 4.144 5 C 0.034 3.966 6 O -0.311 6.311 7 C -0.148 4.148 8 C -0.125 4.125 9 C 0.062 3.938 10 N -0.327 5.327 11 C 0.352 3.648 12 O -0.373 6.373 13 C -0.235 4.235 14 C -0.058 4.058 15 C -0.238 4.238 16 C -0.067 4.067 17 C -0.244 4.244 18 C 0.145 3.855 19 O -0.063 6.063 20 C -0.472 4.472 21 H 0.127 0.873 22 C -0.133 4.133 23 N -0.501 5.501 24 Si 0.723 3.277 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.161 1.161 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.145 0.855 34 H 0.240 0.760 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.242 0.758 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.157 0.843 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.402 -6.403 -15.297 19.063 hybrid contribution 0.424 -0.016 -0.296 0.517 sum -8.978 -6.419 -15.592 19.103 Atomic orbital electron populations 1.21787 0.94698 1.01874 1.02294 1.20489 0.96071 0.92370 1.03311 1.19533 1.03196 0.96108 0.91562 1.20988 1.01984 0.94032 0.97428 1.18369 1.01852 0.91316 0.85023 1.84839 1.33071 1.75727 1.37420 1.21319 1.01473 1.00687 0.91284 1.21317 0.98935 0.93099 0.99113 1.17616 0.99605 0.91540 0.84996 1.43599 1.35485 1.46481 1.07155 1.18367 0.80906 0.82770 0.82780 1.90850 1.30996 1.31534 1.83919 1.18685 1.05429 1.06907 0.92504 1.20746 0.94291 0.93392 0.97419 1.20542 1.04611 1.05185 0.93494 1.20995 0.93398 0.94820 0.97449 1.21300 1.02986 1.00912 0.99186 1.18979 0.86387 0.88244 0.91926 1.83763 1.41329 1.47371 1.33856 1.20939 1.22398 1.18379 0.85474 0.87335 1.24500 0.94704 0.95897 0.98210 1.69630 1.26321 1.29617 1.24545 0.86217 0.76997 0.80721 0.83725 1.19840 1.21143 1.16070 0.92062 0.92760 0.92281 0.90661 0.90760 0.85468 0.75972 0.85349 0.83496 0.75802 0.86952 0.86833 0.86675 0.84289 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.82 37.16 0.36 -0.81 16 2 C -0.08 -0.80 5.46 -27.88 -0.15 -0.95 16 3 C -0.10 -1.25 5.15 -104.45 -0.54 -1.79 16 4 C -0.13 -1.48 9.61 -39.46 -0.38 -1.86 16 5 C 0.08 1.02 6.70 -39.22 -0.26 0.75 16 6 O -0.50 -5.56 13.50 -19.64 -0.27 -5.83 16 7 C -0.13 -1.83 9.98 -39.46 -0.39 -2.23 16 8 C -0.10 -1.71 8.69 -39.41 -0.34 -2.05 16 9 C 0.16 2.37 6.29 -83.64 -0.53 1.85 16 10 N -0.68 -10.24 4.72 -10.78 -0.05 -10.29 16 11 C 0.56 10.96 7.61 -12.48 -0.09 10.87 16 12 O -0.50 -11.80 12.58 -16.59 -0.21 -12.00 16 13 C -0.23 -4.48 5.89 -104.81 -0.62 -5.10 16 14 C -0.04 -0.60 9.53 -39.20 -0.37 -0.97 16 15 C -0.22 -3.21 10.02 -39.61 -0.40 -3.60 16 16 C -0.05 -0.78 10.03 -39.53 -0.40 -1.18 16 17 C -0.22 -4.55 9.16 -39.43 -0.36 -4.92 16 18 C 0.20 4.61 6.66 -38.59 -0.26 4.36 16 19 O -0.16 -4.35 6.67 -21.05 -0.14 -4.49 16 20 C -0.40 -11.07 9.95 30.90 0.31 -10.76 16 21 H 0.11 3.01 5.44 -52.48 -0.29 2.72 16 22 C 0.07 2.06 5.49 -17.52 -0.10 1.96 16 23 N -0.87 -24.71 13.96 55.48 0.77 -23.93 16 24 Si 0.90 22.68 28.62 -169.99 -4.86 17.81 16 25 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.24 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.44 7.28 -51.93 -0.38 0.06 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 32 H 0.07 0.73 7.43 -51.93 -0.39 0.34 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.39 2.50 9.07 45.56 0.41 2.91 16 35 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.15 2.76 6.19 -52.49 -0.32 2.43 16 37 H 0.40 4.78 5.08 -40.82 -0.21 4.57 16 38 H 0.11 1.26 6.41 -52.48 -0.34 0.92 16 39 H 0.11 1.31 8.06 -52.48 -0.42 0.88 16 40 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.14 2.93 5.64 -52.49 -0.30 2.64 16 42 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -32.89 354.83 -7.81 -40.70 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.89 Total: 9.13 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -4.52 Total: -16.45 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.72 Total: -34.22 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.61 Total: -22.32 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.86 Total: 17.81 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.89 -7.81 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191041917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.328 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds