Wall clock time and date at job start Tue Mar 31 2020 14:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47222 * 2 1 4 4 C 1.38101 * 120.00916 * 265.18915 * 3 2 1 5 5 C 1.38711 * 120.01463 * 180.25583 * 4 3 2 6 6 O 1.35970 * 119.98163 * 179.76669 * 5 4 3 7 7 C 1.38739 * 120.03350 * 359.78688 * 5 4 3 8 8 C 1.38058 * 120.01679 * 359.97438 * 7 5 4 9 9 C 1.38843 * 120.00717 * 84.99598 * 3 2 1 10 10 N 1.40038 * 120.01438 * 0.02562 * 9 3 2 11 11 C 1.34779 * 119.99637 * 145.06766 * 10 9 3 12 12 O 1.21608 * 120.00340 * 4.40573 * 11 10 9 13 13 C 1.47508 * 119.99685 * 184.40503 * 11 10 9 14 14 C 1.39674 * 120.20028 * 0.02562 * 13 11 10 15 15 C 1.37825 * 119.91998 * 180.23275 * 14 13 11 16 16 C 1.38570 * 120.32619 * 359.48615 * 15 14 13 17 17 C 1.38033 * 120.40268 * 0.51303 * 16 15 14 18 18 C 1.38837 * 120.07204 * 359.74783 * 17 16 15 19 19 O 1.35516 * 120.16490 * 180.02562 * 18 17 16 20 20 C 1.34816 * 116.99761 * 354.56588 * 19 18 17 21 21 H 1.08006 * 120.00011 * 5.03652 * 20 19 18 22 22 C 1.38696 * 120.00078 * 185.03632 * 20 19 18 23 23 N 1.31515 * 120.00066 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99837 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47373 * 89.99898 * 24 22 20 26 26 H 1.48500 * 109.46710 * 209.99642 * 24 22 20 27 27 H 1.48502 * 109.46925 * 329.99577 * 24 22 20 28 28 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47115 * 299.99977 * 1 2 3 30 30 H 1.08997 * 109.47310 * 59.99975 * 1 2 3 31 31 H 1.09005 * 109.47608 * 240.00215 * 2 1 3 32 32 H 1.08997 * 109.47310 * 120.00024 * 2 1 3 33 33 H 1.08002 * 119.99351 * 0.02562 * 4 3 2 34 34 H 0.96709 * 114.00009 * 270.01954 * 6 5 4 35 35 H 1.08003 * 119.99269 * 179.97438 * 7 5 4 36 36 H 1.08001 * 120.00764 * 179.97438 * 8 7 5 37 37 H 0.96998 * 120.00108 * 325.06137 * 10 9 3 38 38 H 1.08009 * 120.04097 * 359.94701 * 14 13 11 39 39 H 1.08006 * 119.83846 * 179.74673 * 15 14 13 40 40 H 1.07994 * 119.80396 * 180.28517 * 16 15 14 41 41 H 1.07992 * 119.96486 * 179.77123 * 17 16 15 42 42 H 0.96999 * 120.00329 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3571 2.0386 -1.1917 5 6 2.8246 3.3446 -1.1914 6 8 3.1487 3.9505 -2.3646 7 6 2.9620 4.0326 0.0055 8 6 2.6330 3.4180 1.1972 9 6 2.1649 2.1104 1.1977 10 7 1.8324 1.4858 2.4062 11 6 2.5371 1.7591 3.5221 12 8 3.4090 2.6065 3.4986 13 6 2.2507 1.0301 4.7721 14 6 1.2506 0.0556 4.8038 15 6 0.9846 -0.6186 5.9761 16 6 1.7119 -0.3422 7.1227 17 6 2.7033 0.6181 7.1066 18 6 2.9816 1.3111 5.9361 19 8 3.9548 2.2540 5.9180 20 6 4.5399 2.5523 7.0954 21 1 4.2856 1.9909 7.9823 22 6 5.4685 3.5800 7.1676 23 7 6.0389 3.8713 8.3163 24 14 5.9077 4.5514 5.6337 25 1 4.9967 5.7173 5.5082 26 1 7.3105 5.0280 5.7345 27 1 5.7653 3.6810 4.4390 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.2507 1.5035 -2.1238 34 1 4.0711 3.8289 -2.6285 35 1 3.3264 5.0493 0.0050 36 1 2.7404 3.9537 2.1288 37 1 1.0950 0.8566 2.4401 38 1 0.6832 -0.1661 3.9119 39 1 0.2081 -1.3690 6.0002 40 1 1.4995 -0.8788 8.0355 41 1 3.2633 0.8304 8.0052 42 1 6.6880 4.5903 8.3669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191041917.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:46 Heat of formation + Delta-G solvation = -72.958459 kcal Electronic energy + Delta-G solvation = -27383.727298 eV Core-core repulsion = 23486.896105 eV Total energy + Delta-G solvation = -3896.831193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.95667 -40.93525 -39.80573 -38.25487 -37.99393 -35.34145 -34.74448 -34.53874 -32.35558 -30.84602 -30.69565 -29.29588 -27.31657 -25.27473 -24.88433 -23.79295 -22.88392 -22.00724 -21.58062 -19.84786 -19.73783 -18.95969 -18.47342 -18.07650 -16.89821 -16.72986 -16.36014 -16.24323 -15.86792 -15.85979 -15.55555 -15.45712 -15.14447 -14.82253 -14.71135 -14.50786 -14.27889 -14.10171 -14.06075 -13.48786 -13.19523 -13.18109 -12.86240 -12.81635 -12.62216 -12.42928 -12.29237 -12.06249 -11.83709 -11.57799 -11.49603 -11.20357 -10.99720 -10.69498 -9.96181 -9.83571 -9.21972 -8.94876 -8.60733 -6.29404 -0.12686 0.25062 0.30952 0.62232 1.21997 1.26784 1.54733 1.88717 2.00149 2.25838 2.60690 2.73988 2.97288 3.12628 3.28135 3.70137 3.78919 3.86960 3.96733 4.18166 4.22145 4.28292 4.41047 4.45514 4.48095 4.56018 4.58377 4.74675 4.76850 4.93918 5.00804 5.07118 5.11433 5.19656 5.25545 5.35994 5.42654 5.44170 5.44457 5.49462 5.59387 5.67108 5.80752 5.89080 6.12207 6.44102 6.76089 6.84002 7.20590 7.54799 8.49608 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011163 B = 0.004553 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.589885 B = 6148.655641 C = 8510.740032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.122 4.122 5 C 0.090 3.910 6 O -0.505 6.505 7 C -0.145 4.145 8 C -0.129 4.129 9 C 0.131 3.869 10 N -0.656 5.656 11 C 0.554 3.446 12 O -0.548 6.548 13 C -0.235 4.235 14 C -0.030 4.030 15 C -0.186 4.186 16 C -0.038 4.038 17 C -0.250 4.250 18 C 0.165 3.835 19 O -0.209 6.209 20 C -0.403 4.403 21 H 0.094 0.906 22 C 0.028 3.972 23 N -0.909 5.909 24 Si 0.953 3.047 25 H -0.277 1.277 26 H -0.266 1.266 27 H -0.266 1.266 28 H 0.082 0.918 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.408 0.592 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.422 0.578 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.204 -11.134 -18.500 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.141 4.141 5 C 0.045 3.955 6 O -0.318 6.318 7 C -0.164 4.164 8 C -0.150 4.150 9 C 0.036 3.964 10 N -0.304 5.304 11 C 0.346 3.654 12 O -0.426 6.426 13 C -0.239 4.239 14 C -0.048 4.048 15 C -0.204 4.204 16 C -0.056 4.056 17 C -0.269 4.269 18 C 0.112 3.888 19 O -0.113 6.113 20 C -0.479 4.479 21 H 0.111 0.889 22 C -0.172 4.172 23 N -0.549 5.549 24 Si 0.777 3.223 25 H -0.203 1.203 26 H -0.191 1.191 27 H -0.190 1.190 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.177 0.823 34 H 0.267 0.733 35 H 0.148 0.852 36 H 0.128 0.872 37 H 0.262 0.738 38 H 0.182 0.818 39 H 0.187 0.813 40 H 0.171 0.829 41 H 0.134 0.866 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.898 -10.117 -18.508 24.724 hybrid contribution 1.105 0.800 0.431 1.431 sum -11.793 -9.317 -18.077 23.509 Atomic orbital electron populations 1.21792 0.93162 1.03276 1.02232 1.20616 0.97262 0.90031 1.04350 1.19872 1.01279 0.97460 0.90340 1.21340 1.00697 0.93579 0.98483 1.18421 1.00716 0.91540 0.84825 1.84778 1.35079 1.75702 1.36220 1.21388 1.02320 1.01189 0.91548 1.21151 1.01024 0.94331 0.98464 1.17769 1.01384 0.91430 0.85769 1.43233 1.35030 1.46058 1.06112 1.18567 0.80685 0.82217 0.83934 1.90850 1.33357 1.33613 1.84786 1.19112 1.05807 1.07623 0.91401 1.21342 0.92471 0.91041 0.99954 1.21247 1.03501 1.03947 0.91741 1.21485 0.91288 0.92897 0.99975 1.21345 1.04901 1.02826 0.97808 1.19727 0.86776 0.88120 0.94201 1.83759 1.44289 1.50483 1.32721 1.20900 1.22647 1.18298 0.86014 0.88859 1.25004 0.95353 0.96952 0.99910 1.69673 1.28426 1.31347 1.25440 0.85452 0.77488 0.78988 0.80384 1.20265 1.19108 1.19010 0.89902 0.93082 0.92215 0.88597 0.90830 0.82287 0.73326 0.85177 0.87196 0.73756 0.81824 0.81292 0.82948 0.86577 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.82 71.98 0.71 -0.90 16 2 C -0.09 -1.23 5.46 29.85 0.16 -1.06 16 3 C -0.09 -1.91 5.15 -19.75 -0.10 -2.01 16 4 C -0.12 -2.50 9.61 22.35 0.21 -2.28 16 5 C 0.09 2.15 6.70 22.50 0.15 2.30 16 6 O -0.50 -9.93 13.50 -93.21 -1.26 -11.19 16 7 C -0.15 -4.24 9.98 22.35 0.22 -4.01 16 8 C -0.13 -4.45 8.69 22.38 0.19 -4.25 16 9 C 0.13 3.86 6.29 38.13 0.24 4.10 16 10 N -0.66 -18.91 4.72 -306.26 -1.45 -20.35 16 11 C 0.55 22.08 7.61 86.69 0.66 22.74 16 12 O -0.55 -27.74 12.58 16.84 0.21 -27.53 16 13 C -0.23 -8.97 5.89 -19.99 -0.12 -9.09 16 14 C -0.03 -0.76 9.53 22.52 0.21 -0.54 16 15 C -0.19 -4.28 10.02 22.25 0.22 -4.06 16 16 C -0.04 -1.11 10.03 22.30 0.22 -0.89 16 17 C -0.25 -10.30 9.16 22.36 0.20 -10.09 16 18 C 0.17 7.81 6.66 22.91 0.15 7.96 16 19 O -0.21 -11.98 6.67 0.87 0.01 -11.97 16 20 C -0.40 -24.35 9.95 67.93 0.68 -23.67 16 21 H 0.09 5.69 5.44 -2.91 -0.02 5.67 16 22 C 0.03 1.72 5.49 84.85 0.47 2.18 16 23 N -0.91 -55.37 13.96 21.62 0.30 -55.07 16 24 Si 0.95 50.76 28.62 68.60 1.96 52.72 16 25 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 26 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 27 H -0.27 -15.20 7.11 99.48 0.71 -14.49 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.59 7.28 -2.39 -0.02 0.57 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 1.04 8.05 -2.38 -0.02 1.02 16 32 H 0.07 1.10 7.43 -2.39 -0.02 1.08 16 33 H 0.16 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.41 4.17 9.07 -74.05 -0.67 3.50 16 35 H 0.13 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.11 4.58 6.19 -2.91 -0.02 4.56 16 37 H 0.42 8.48 5.08 -92.71 -0.47 8.01 16 38 H 0.16 2.50 6.41 -2.91 -0.02 2.48 16 39 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.12 5.27 5.64 -2.91 -0.02 5.25 16 42 H 0.29 16.07 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -81.92 354.83 4.22 -77.70 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.05 Total: 19.29 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: 4.49 Total: -23.59 kcal Atomic # 7 Polarization: -74.28 SS G_CDS: -1.14 Total: -75.43 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -1.04 Total: -50.69 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 1.96 Total: 52.72 kcal Total: -81.92 4.22 -77.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191041917.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.737 kcal (2) G-P(sol) polarization free energy of solvation -81.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds