Wall clock time and date at job start Tue Mar 31 2020 15:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 C 1.52999 * 109.46713 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47010 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00717 * 275.00639 * 5 4 3 7 7 H 1.07996 * 120.00662 * 141.29707 * 6 5 4 8 8 C 1.38814 * 119.99805 * 321.30047 * 6 5 4 9 9 N 1.31616 * 119.99939 * 338.96551 * 8 6 5 10 10 Si 1.86796 * 119.99990 * 158.95914 * 8 6 5 11 11 H 1.48506 * 109.46865 * 90.00493 * 10 8 6 12 12 H 1.48505 * 109.47177 * 209.99852 * 10 8 6 13 13 H 1.48502 * 109.47608 * 330.00395 * 10 8 6 14 14 S 1.65604 * 119.99760 * 95.00224 * 5 4 3 15 15 O 1.42098 * 104.27649 * 149.70577 * 14 5 4 16 16 O 1.42101 * 104.27775 * 21.85297 * 14 5 4 17 17 C 1.81398 * 104.45156 * 265.77832 * 14 5 4 18 18 C 1.50696 * 109.47280 * 179.97438 * 17 14 5 19 19 C 1.38291 * 119.97691 * 270.02898 * 18 17 14 20 20 C 1.38237 * 120.11452 * 180.02562 * 19 18 17 21 21 C 1.38174 * 120.05580 * 359.66920 * 20 19 18 22 22 C 1.38709 * 119.93997 * 0.57494 * 21 20 19 23 23 O 1.35902 * 120.05630 * 179.71966 * 22 21 20 24 24 C 1.42907 * 116.99748 * 359.73142 * 23 22 21 25 25 C 1.38130 * 119.97103 * 89.99997 * 18 17 14 26 26 H 1.09004 * 109.47359 * 59.99675 * 1 2 3 27 27 H 1.08997 * 109.47805 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47683 * 300.00046 * 1 2 3 29 29 H 1.09004 * 109.46980 * 240.00196 * 2 1 3 30 30 H 1.09002 * 109.46887 * 120.00130 * 2 1 3 31 31 H 1.09004 * 109.47097 * 60.00268 * 3 2 1 32 32 H 1.08996 * 109.46982 * 299.99829 * 3 2 1 33 33 H 1.09004 * 109.46732 * 60.00520 * 4 3 2 34 34 H 1.08994 * 109.47404 * 300.00636 * 4 3 2 35 35 H 0.97003 * 120.00260 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.46910 * 60.00223 * 17 14 5 37 37 H 1.08999 * 109.47316 * 299.99589 * 17 14 5 38 38 H 1.07996 * 119.94031 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.97334 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.02966 * 180.30162 * 21 20 19 41 41 H 1.08996 * 109.47067 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47047 * 299.99837 * 24 23 22 43 43 H 1.08999 * 109.46850 * 60.00083 * 24 23 22 44 44 H 1.08000 * 120.02475 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.1895 3.5031 -1.1816 7 1 3.9326 4.5507 -1.2336 8 6 4.6528 2.8451 -2.3127 9 7 5.3438 1.7318 -2.1897 10 14 4.2952 3.5399 -4.0094 11 1 5.3865 4.4661 -4.4051 12 1 4.2088 2.4289 -4.9911 13 1 3.0063 4.2769 -3.9811 14 16 4.4516 3.5634 1.4285 15 8 5.4820 4.4770 1.0779 16 8 4.6996 2.4878 2.3235 17 6 2.9458 4.4549 1.9062 18 6 3.1810 5.1767 3.2080 19 6 2.9103 4.5441 4.4076 20 6 3.1245 5.2038 5.6034 21 6 3.6163 6.4950 5.6030 22 6 3.8838 7.1336 4.4010 23 8 4.3622 8.4056 4.3977 24 6 4.5606 9.0273 5.6690 25 6 3.6674 6.4695 3.2021 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9285 -0.8892 34 1 3.9329 0.9287 0.8907 35 1 5.6672 1.2718 -2.9802 36 1 2.1268 3.7459 2.0272 37 1 2.6897 5.1771 1.1311 38 1 2.5301 3.5333 4.4101 39 1 2.9119 4.7078 6.5388 40 1 3.7881 7.0083 6.5376 41 1 4.9448 10.0370 5.5237 42 1 3.6117 9.0727 6.2033 43 1 5.2772 8.4464 6.2497 44 1 3.8787 6.9631 2.2650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000197391834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:24 Heat of formation + Delta-G solvation = -89.071158 kcal Electronic energy + Delta-G solvation = -26433.914997 eV Core-core repulsion = 22671.829056 eV Total energy + Delta-G solvation = -3762.085941 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.14409 -37.66167 -36.37872 -35.87511 -34.69553 -33.80247 -32.58817 -31.29024 -30.51170 -28.12013 -27.61588 -26.78592 -24.61372 -22.58479 -22.32157 -21.30811 -20.36734 -18.48971 -17.79496 -17.17862 -16.37068 -16.22446 -15.97776 -15.83156 -15.49889 -14.90459 -14.66131 -14.43277 -14.19217 -13.82851 -13.48222 -13.31941 -13.26835 -12.73578 -12.37705 -12.31005 -12.16039 -12.02779 -11.63847 -11.54022 -11.35503 -11.27395 -11.24279 -10.97814 -10.90771 -10.85902 -10.81359 -10.58536 -10.40556 -10.30555 -10.27925 -9.98447 -9.64661 -9.02464 -8.65867 -8.19778 -7.62941 -6.23665 -3.95348 0.99068 1.44623 1.60114 3.17775 3.22160 3.29321 3.31509 3.75831 3.95042 4.35704 4.65078 4.72376 4.84897 4.90637 4.98488 5.00419 5.04672 5.16486 5.29548 5.36202 5.43062 5.44130 5.47764 5.58757 5.61805 5.77211 5.92024 5.98603 6.08061 6.21301 6.25384 6.25828 6.34750 6.40986 6.46186 6.58815 6.64555 6.71699 6.74872 6.92589 7.33398 7.35444 7.43231 7.80355 8.43227 9.04262 9.42455 10.78949 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.004104 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.964193 B = 6821.651360 C = 8090.466290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.135 4.135 4 C 0.119 3.881 5 N -0.843 5.843 6 C -0.286 4.286 7 H 0.087 0.913 8 C 0.043 3.957 9 N -0.853 5.853 10 Si 0.912 3.088 11 H -0.276 1.276 12 H -0.283 1.283 13 H -0.269 1.269 14 S 2.553 3.447 15 O -0.959 6.959 16 O -0.988 6.988 17 C -0.595 4.595 18 C -0.036 4.036 19 C -0.147 4.147 20 C -0.079 4.079 21 C -0.211 4.211 22 C 0.127 3.873 23 O -0.315 6.315 24 C 0.028 3.972 25 C -0.141 4.141 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.267 0.733 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.295 5.539 11.263 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.175 4.175 4 C -0.008 4.008 5 N -0.674 5.674 6 C -0.422 4.422 7 H 0.105 0.895 8 C -0.165 4.165 9 N -0.492 5.492 10 Si 0.738 3.262 11 H -0.202 1.202 12 H -0.208 1.208 13 H -0.194 1.194 14 S 2.652 3.348 15 O -0.948 6.948 16 O -0.978 6.978 17 C -0.718 4.718 18 C -0.038 4.038 19 C -0.166 4.166 20 C -0.097 4.097 21 C -0.230 4.230 22 C 0.082 3.918 23 O -0.229 6.229 24 C -0.068 4.068 25 C -0.160 4.160 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.326 5.531 11.578 14.775 hybrid contribution -0.827 0.513 -0.653 1.172 sum -8.153 6.044 10.924 14.911 Atomic orbital electron populations 1.21772 0.96712 1.00737 1.01445 1.21465 0.94883 0.97837 1.01917 1.22093 0.98559 0.95498 1.01322 1.21323 0.90610 0.84330 1.04523 1.52584 1.77032 1.20423 1.17324 1.18996 1.41723 0.96059 0.85444 0.89541 1.25398 0.94307 0.96840 1.00005 1.70000 1.31089 1.17990 1.30146 0.86187 0.79142 0.78665 0.82167 1.20235 1.20808 1.19394 1.07881 0.76176 0.75217 0.75562 1.93465 1.51456 1.67715 1.82203 1.93415 1.83865 1.52165 1.68346 1.29915 1.25912 1.13564 1.02390 1.18950 0.98109 0.93356 0.93354 1.21095 1.03139 1.00763 0.91606 1.20894 0.97055 0.93736 0.98036 1.21236 1.07608 0.97363 0.96817 1.18913 0.94756 0.84173 0.93928 1.86095 1.79934 1.25223 1.31636 1.23047 1.00972 0.98209 0.84540 1.20435 1.03992 0.94380 0.97237 0.92942 0.93436 0.93196 0.91916 0.92328 0.93909 0.91282 0.87362 0.92006 0.92284 0.84780 0.84378 0.85086 0.85368 0.85376 0.88282 0.92767 0.92624 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.03 16 3 C -0.14 -2.42 5.51 -26.73 -0.15 -2.57 16 4 C 0.12 2.65 5.26 -4.04 -0.02 2.63 16 5 N -0.84 -20.34 2.74 -59.91 -0.16 -20.50 16 6 C -0.29 -7.30 8.80 -15.06 -0.13 -7.44 16 7 H 0.09 2.11 7.91 -52.49 -0.42 1.69 16 8 C 0.04 1.10 5.00 -17.43 -0.09 1.01 16 9 N -0.85 -22.99 11.46 55.49 0.64 -22.36 16 10 Si 0.91 19.79 29.60 -169.99 -5.03 14.75 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 13 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 14 S 2.55 58.85 5.36 -107.50 -0.58 58.28 16 15 O -0.96 -25.57 17.30 -57.54 -1.00 -26.57 16 16 O -0.99 -24.31 16.44 -57.54 -0.95 -25.25 16 17 C -0.60 -10.41 6.30 36.00 0.23 -10.18 16 18 C -0.04 -0.62 5.14 -104.64 -0.54 -1.15 16 19 C -0.15 -2.24 9.70 -39.56 -0.38 -2.62 16 20 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 21 C -0.21 -2.70 9.04 -39.43 -0.36 -3.06 16 22 C 0.13 1.92 6.69 -39.22 -0.26 1.66 16 23 O -0.32 -4.34 10.50 -19.43 -0.20 -4.55 16 24 C 0.03 0.24 9.81 101.05 0.99 1.23 16 25 C -0.14 -2.39 9.64 -39.43 -0.38 -2.77 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.70 7.27 -51.93 -0.38 0.32 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.11 2.63 5.56 -51.93 -0.29 2.35 16 34 H 0.06 1.38 6.77 -51.93 -0.35 1.03 16 35 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 36 H 0.13 2.02 7.21 -51.93 -0.37 1.65 16 37 H 0.14 2.22 8.08 -51.92 -0.42 1.80 16 38 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.23 6.30 -52.49 -0.33 0.89 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 43 H 0.06 0.43 7.65 -51.93 -0.40 0.04 16 44 H 0.14 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -32.90 375.41 -9.62 -42.52 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.72 Total: 6.26 kcal Atomic # 6 Polarization: -26.96 SS G_CDS: -1.28 Total: -28.24 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.47 Total: -42.86 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -2.15 Total: -56.37 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.75 kcal Atomic # 16 Polarization: 58.85 SS G_CDS: -0.58 Total: 58.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.90 -9.62 -42.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197391834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.553 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds