Wall clock time and date at job start Tue Mar 31 2020 15:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46994 * 2 1 4 4 C 1.52999 * 109.46713 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47010 * 179.97438 * 4 3 2 6 6 C 1.36934 * 120.00717 * 275.00639 * 5 4 3 7 7 H 1.07996 * 120.00662 * 141.29707 * 6 5 4 8 8 C 1.38814 * 119.99805 * 321.30047 * 6 5 4 9 9 N 1.31616 * 119.99939 * 338.96551 * 8 6 5 10 10 Si 1.86796 * 119.99990 * 158.95914 * 8 6 5 11 11 H 1.48506 * 109.46865 * 90.00493 * 10 8 6 12 12 H 1.48505 * 109.47177 * 209.99852 * 10 8 6 13 13 H 1.48502 * 109.47608 * 330.00395 * 10 8 6 14 14 S 1.65604 * 119.99760 * 95.00224 * 5 4 3 15 15 O 1.42098 * 104.27649 * 149.70577 * 14 5 4 16 16 O 1.42101 * 104.27775 * 21.85297 * 14 5 4 17 17 C 1.81398 * 104.45156 * 265.77832 * 14 5 4 18 18 C 1.50696 * 109.47280 * 179.97438 * 17 14 5 19 19 C 1.38291 * 119.97691 * 270.02898 * 18 17 14 20 20 C 1.38237 * 120.11452 * 180.02562 * 19 18 17 21 21 C 1.38174 * 120.05580 * 359.66920 * 20 19 18 22 22 C 1.38709 * 119.93997 * 0.57494 * 21 20 19 23 23 O 1.35902 * 120.05630 * 179.71966 * 22 21 20 24 24 C 1.42907 * 116.99748 * 359.73142 * 23 22 21 25 25 C 1.38130 * 119.97103 * 89.99997 * 18 17 14 26 26 H 1.09004 * 109.47359 * 59.99675 * 1 2 3 27 27 H 1.08997 * 109.47805 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47683 * 300.00046 * 1 2 3 29 29 H 1.09004 * 109.46980 * 240.00196 * 2 1 3 30 30 H 1.09002 * 109.46887 * 120.00130 * 2 1 3 31 31 H 1.09004 * 109.47097 * 60.00268 * 3 2 1 32 32 H 1.08996 * 109.46982 * 299.99829 * 3 2 1 33 33 H 1.09004 * 109.46732 * 60.00520 * 4 3 2 34 34 H 1.08994 * 109.47404 * 300.00636 * 4 3 2 35 35 H 0.97003 * 120.00260 * 179.97438 * 9 8 6 36 36 H 1.08994 * 109.46910 * 60.00223 * 17 14 5 37 37 H 1.08999 * 109.47316 * 299.99589 * 17 14 5 38 38 H 1.07996 * 119.94031 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.97334 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.02966 * 180.30162 * 21 20 19 41 41 H 1.08996 * 109.47067 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47047 * 299.99837 * 24 23 22 43 43 H 1.08999 * 109.46850 * 60.00083 * 24 23 22 44 44 H 1.08000 * 120.02475 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.1895 3.5031 -1.1816 7 1 3.9326 4.5507 -1.2336 8 6 4.6528 2.8451 -2.3127 9 7 5.3438 1.7318 -2.1897 10 14 4.2952 3.5399 -4.0094 11 1 5.3865 4.4661 -4.4051 12 1 4.2088 2.4289 -4.9911 13 1 3.0063 4.2769 -3.9811 14 16 4.4516 3.5634 1.4285 15 8 5.4820 4.4770 1.0779 16 8 4.6996 2.4878 2.3235 17 6 2.9458 4.4549 1.9062 18 6 3.1810 5.1767 3.2080 19 6 2.9103 4.5441 4.4076 20 6 3.1245 5.2038 5.6034 21 6 3.6163 6.4950 5.6030 22 6 3.8838 7.1336 4.4010 23 8 4.3622 8.4056 4.3977 24 6 4.5606 9.0273 5.6690 25 6 3.6674 6.4695 3.2021 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9336 0.9285 -0.8892 34 1 3.9329 0.9287 0.8907 35 1 5.6672 1.2718 -2.9802 36 1 2.1268 3.7459 2.0272 37 1 2.6897 5.1771 1.1311 38 1 2.5301 3.5333 4.4101 39 1 2.9119 4.7078 6.5388 40 1 3.7881 7.0083 6.5376 41 1 4.9448 10.0370 5.5237 42 1 3.6117 9.0727 6.2033 43 1 5.2772 8.4464 6.2497 44 1 3.8787 6.9631 2.2650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000197391834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:22 Heat of formation + Delta-G solvation = -110.401241 kcal Electronic energy + Delta-G solvation = -26434.839938 eV Core-core repulsion = 22671.829056 eV Total energy + Delta-G solvation = -3763.010882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -41.18359 -38.71233 -38.10422 -37.77822 -36.62491 -35.27348 -33.79364 -33.14493 -31.56906 -29.61277 -28.64492 -27.82147 -26.42426 -23.88501 -23.63414 -22.44161 -21.74085 -20.29571 -19.04828 -18.89588 -18.11698 -17.38270 -17.26756 -17.07161 -16.67354 -16.60870 -16.27023 -15.95957 -15.38142 -15.13609 -14.88105 -14.71468 -14.41416 -13.88901 -13.80246 -13.71329 -13.52257 -13.11511 -13.06460 -12.96970 -12.90909 -12.89255 -12.76389 -12.68186 -12.56317 -12.32205 -12.13200 -11.90015 -11.87279 -11.78649 -11.69785 -11.52877 -11.23937 -10.84616 -9.94250 -9.50188 -9.26686 -8.16213 -5.94240 -0.60315 0.28953 0.35695 1.49248 1.50234 1.61494 2.14804 2.29576 2.55450 2.65066 2.97610 3.22391 3.38498 3.49509 3.78317 3.99454 4.07508 4.18977 4.24098 4.26028 4.29812 4.39733 4.40197 4.43899 4.52066 4.59561 4.62240 4.72312 4.90301 4.95742 4.96441 5.04207 5.11650 5.18354 5.30756 5.32932 5.37781 5.43073 5.50369 5.56636 5.66560 5.70459 5.97187 6.38030 6.50964 7.11782 7.49005 8.86463 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013394 B = 0.004104 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.964193 B = 6821.651360 C = 8090.466290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.126 4.126 4 C 0.116 3.884 5 N -0.857 5.857 6 C -0.306 4.306 7 H 0.091 0.909 8 C -0.004 4.004 9 N -0.893 5.893 10 Si 0.974 3.026 11 H -0.282 1.282 12 H -0.279 1.279 13 H -0.253 1.253 14 S 2.546 3.454 15 O -1.009 7.009 16 O -1.014 7.014 17 C -0.559 4.559 18 C -0.065 4.065 19 C -0.160 4.160 20 C -0.074 4.074 21 C -0.200 4.200 22 C 0.118 3.882 23 O -0.338 6.338 24 C 0.015 3.985 25 C -0.170 4.170 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.267 0.733 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.166 0.834 41 H 0.118 0.882 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.716 6.552 13.411 18.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C -0.166 4.166 4 C -0.010 4.010 5 N -0.687 5.687 6 C -0.441 4.441 7 H 0.109 0.891 8 C -0.209 4.209 9 N -0.533 5.533 10 Si 0.797 3.203 11 H -0.208 1.208 12 H -0.204 1.204 13 H -0.176 1.176 14 S 2.652 3.348 15 O -0.999 6.999 16 O -1.004 7.004 17 C -0.688 4.688 18 C -0.067 4.067 19 C -0.179 4.179 20 C -0.091 4.091 21 C -0.219 4.219 22 C 0.072 3.928 23 O -0.252 6.252 24 C -0.079 4.079 25 C -0.190 4.190 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.181 0.819 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.186 0.814 40 H 0.184 0.816 41 H 0.137 0.863 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.704 6.505 13.684 17.993 hybrid contribution -0.057 0.330 -1.070 1.121 sum -9.762 6.834 12.615 17.353 Atomic orbital electron populations 1.21725 0.94202 1.02134 1.02055 1.21463 0.97017 0.95781 1.01766 1.21990 0.95090 0.97625 1.01878 1.21333 0.93612 0.83410 1.02693 1.52675 1.77569 1.21064 1.17381 1.19302 1.41977 0.96447 0.86363 0.89102 1.26238 0.93985 0.97154 1.03480 1.70120 1.32597 1.19572 1.31007 0.85246 0.79314 0.77971 0.77726 1.20782 1.20399 1.17623 1.07490 0.77554 0.74790 0.74971 1.93402 1.55293 1.68360 1.82877 1.93372 1.85288 1.53380 1.68316 1.29462 1.21974 1.13659 1.03700 1.18987 1.00404 0.93785 0.93475 1.21413 1.03214 1.01506 0.91798 1.21384 0.95343 0.93676 0.98747 1.21694 1.05493 0.97308 0.97401 1.19066 0.94722 0.84904 0.94094 1.86072 1.79702 1.24741 1.34698 1.23429 1.02482 0.98977 0.82999 1.20537 1.05463 0.95042 0.97959 0.92823 0.91702 0.92093 0.92805 0.91910 0.92027 0.91902 0.89896 0.93092 0.92322 0.81869 0.83046 0.83854 0.81437 0.81630 0.86336 0.90801 0.91526 0.85658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.91 71.98 0.71 -2.59 16 2 C -0.12 -3.60 5.93 30.59 0.18 -3.42 16 3 C -0.13 -4.48 5.51 30.59 0.17 -4.31 16 4 C 0.12 5.34 5.26 86.38 0.45 5.80 16 5 N -0.86 -42.61 2.74 -343.47 -0.94 -43.55 16 6 C -0.31 -16.08 8.80 84.03 0.74 -15.34 16 7 H 0.09 4.55 7.91 -2.91 -0.02 4.53 16 8 C 0.00 -0.22 5.00 84.86 0.42 0.20 16 9 N -0.89 -50.20 11.46 21.65 0.25 -49.95 16 10 Si 0.97 41.31 29.60 68.60 2.03 43.34 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 13 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 14 S 2.55 120.68 5.36 -56.49 -0.30 120.38 16 15 O -1.01 -56.42 17.30 -127.65 -2.21 -58.63 16 16 O -1.01 -51.19 16.44 -127.65 -2.10 -53.29 16 17 C -0.56 -19.17 6.30 71.23 0.45 -18.73 16 18 C -0.06 -2.15 5.14 -19.88 -0.10 -2.25 16 19 C -0.16 -4.50 9.70 22.28 0.22 -4.28 16 20 C -0.07 -1.64 10.04 22.25 0.22 -1.41 16 21 C -0.20 -4.42 9.04 22.37 0.20 -4.22 16 22 C 0.12 3.36 6.69 22.51 0.15 3.51 16 23 O -0.34 -8.84 10.50 -92.45 -0.97 -9.81 16 24 C 0.02 0.22 9.81 113.37 1.11 1.33 16 25 C -0.17 -5.75 9.64 22.37 0.22 -5.53 16 26 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.06 1.91 7.27 -2.38 -0.02 1.89 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 4.25 5.56 -2.38 -0.01 4.24 16 34 H 0.05 2.38 6.77 -2.39 -0.02 2.36 16 35 H 0.27 14.13 8.31 -92.71 -0.77 13.35 16 36 H 0.16 4.58 7.21 -2.39 -0.02 4.56 16 37 H 0.15 4.79 8.08 -2.39 -0.02 4.77 16 38 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 39 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.17 2.33 6.30 -2.91 -0.02 2.31 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 43 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 44 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -75.67 375.41 1.89 -73.78 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.98 Total: 28.96 kcal Atomic # 6 Polarization: -56.39 SS G_CDS: 5.15 Total: -51.24 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -0.69 Total: -93.50 kcal Atomic # 8 Polarization: -116.45 SS G_CDS: -5.28 Total: -121.73 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Atomic # 16 Polarization: 120.68 SS G_CDS: -0.30 Total: 120.38 kcal Total: -75.67 1.89 -73.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197391834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.617 kcal (2) G-P(sol) polarization free energy of solvation -75.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds