Wall clock time and date at job start Tue Mar 31 2020 14:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46791 * 2 1 4 4 C 1.52992 * 109.47310 * 120.00605 * 2 1 3 5 5 C 1.53005 * 109.47334 * 174.42081 * 4 2 1 6 6 H 1.08999 * 109.46729 * 57.38011 * 5 4 2 7 7 O 1.42898 * 109.46565 * 297.38509 * 5 4 2 8 8 C 1.52997 * 109.47249 * 177.38187 * 5 4 2 9 9 N 1.46503 * 109.46737 * 184.99686 * 8 5 4 10 10 S 1.65605 * 119.99540 * 164.99864 * 9 8 5 11 11 O 1.42101 * 106.39711 * 178.53729 * 10 9 8 12 12 O 1.42095 * 106.40307 * 311.46204 * 10 9 8 13 13 C 1.76206 * 107.21546 * 65.00102 * 10 9 8 14 14 C 1.38623 * 119.75070 * 269.72421 * 13 10 9 15 15 C 1.37620 * 120.24898 * 179.72415 * 14 13 10 16 16 C 1.40719 * 119.74161 * 0.56904 * 15 14 13 17 17 C 1.41398 * 120.24088 * 179.68189 * 16 15 14 18 18 H 1.07994 * 120.00146 * 208.80847 * 17 16 15 19 19 C 1.39949 * 119.99822 * 28.81152 * 17 16 15 20 20 N 1.30817 * 120.00241 * 10.22468 * 19 17 16 21 21 Si 1.86802 * 119.99466 * 190.22178 * 19 17 16 22 22 H 1.48503 * 109.47368 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46719 * 120.00205 * 21 19 17 24 24 H 1.48496 * 109.47328 * 239.99762 * 21 19 17 25 25 C 1.40710 * 119.51508 * 359.70797 * 16 15 14 26 26 C 1.37623 * 119.74215 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.47633 * 64.89000 * 1 2 3 28 28 H 1.09000 * 109.46832 * 184.88831 * 1 2 3 29 29 H 1.08998 * 109.47244 * 304.89048 * 1 2 3 30 30 H 1.09001 * 109.46808 * 240.00787 * 2 1 3 31 31 H 1.08998 * 109.46964 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47630 * 300.00353 * 3 2 1 33 33 H 1.09001 * 109.46802 * 60.00783 * 3 2 1 34 34 H 1.08993 * 109.47321 * 54.41918 * 4 2 1 35 35 H 1.09009 * 109.46866 * 294.41350 * 4 2 1 36 36 H 0.96705 * 114.00159 * 299.99297 * 7 5 4 37 37 H 1.09001 * 109.47301 * 304.99752 * 8 5 4 38 38 H 1.09004 * 109.46998 * 64.99931 * 8 5 4 39 39 H 0.96997 * 120.00004 * 345.00393 * 9 8 5 40 40 H 1.08006 * 119.87499 * 359.97438 * 14 13 10 41 41 H 1.08001 * 120.13158 * 180.27785 * 15 14 13 42 42 H 0.96996 * 119.99748 * 180.02562 * 20 19 17 43 43 H 1.07995 * 120.12982 * 179.97438 * 25 16 15 44 44 H 1.07997 * 119.87653 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5636 -0.8439 1.1809 6 1 4.0039 0.1484 1.0828 7 8 3.9272 -1.6402 0.0514 8 6 4.0797 -1.5067 2.4597 9 7 5.5446 -1.5163 2.4477 10 16 6.3820 -1.8249 3.8427 11 8 7.7602 -1.7973 3.4978 12 8 5.8145 -0.9915 4.8440 13 6 6.0197 -3.4841 4.3123 14 6 4.9448 -3.7433 5.1484 15 6 4.6491 -5.0358 5.5170 16 6 5.4500 -6.0951 5.0515 17 6 5.1598 -7.4265 5.4290 18 1 5.9543 -8.1553 5.4920 19 6 3.8431 -7.7998 5.7211 20 7 2.8571 -6.9822 5.4552 21 14 3.4935 -9.4656 6.4907 22 1 4.7707 -10.1964 6.6907 23 1 2.8227 -9.2742 7.8017 24 1 2.6092 -10.2503 5.5921 25 6 6.5420 -5.8196 4.2079 26 6 6.8150 -4.5199 3.8469 27 1 -0.3634 0.4361 -0.9305 28 1 -0.3633 -1.0239 0.0876 29 1 -0.3633 0.5878 0.8429 30 1 1.8933 -0.5137 -0.8901 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 1.5975 -1.7160 1.3004 35 1 1.7607 -0.1530 2.1364 36 1 3.5694 -2.5383 0.0718 37 1 3.7270 -0.9478 3.3265 38 1 3.7101 -2.5308 2.5128 39 1 6.0240 -1.3418 1.6227 40 1 4.3346 -2.9282 5.5086 41 1 3.8085 -5.2360 6.1649 42 1 1.9445 -7.2409 5.6580 43 1 7.1635 -6.6249 3.8452 44 1 7.6529 -4.3060 3.1999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228550107.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:08 Heat of formation + Delta-G solvation = -161.839382 kcal Electronic energy + Delta-G solvation = -25875.653164 eV Core-core repulsion = 22110.411756 eV Total energy + Delta-G solvation = -3765.241407 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.56976 -39.38422 -38.13998 -36.79670 -36.33259 -35.76714 -35.23830 -32.04932 -31.29922 -30.72416 -27.99370 -27.61062 -26.50903 -23.33543 -22.98974 -22.82256 -20.96994 -20.27649 -19.41135 -18.64628 -18.31422 -17.65469 -17.23689 -16.99572 -16.58463 -15.86746 -15.83567 -15.40854 -15.19228 -14.95164 -14.86909 -14.68269 -14.13633 -14.06320 -13.89158 -13.65512 -13.37402 -13.13824 -13.06093 -12.99863 -12.98553 -12.88925 -12.84324 -12.63335 -12.54995 -12.21613 -11.95723 -11.90231 -11.57069 -11.48751 -11.36746 -11.33717 -11.26465 -10.80774 -10.37278 -9.74409 -9.54586 -8.80667 -6.65734 -0.30715 0.46418 1.04442 1.37348 1.41863 1.52747 2.13049 2.24915 2.55308 2.93557 3.45274 3.52162 3.55809 3.77718 3.92476 4.06012 4.17751 4.25993 4.30383 4.32408 4.47033 4.56309 4.68999 4.83595 4.86598 4.88499 4.93527 4.98604 5.03557 5.05272 5.11970 5.13414 5.20295 5.23437 5.37669 5.51970 5.53659 5.57967 5.58010 5.75602 5.94387 6.15736 6.19000 6.50459 6.70149 6.80384 6.83303 8.13248 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.003540 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.978211 B = 7907.726231 C = 9641.157723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.147 4.147 5 C 0.110 3.890 6 H 0.110 0.890 7 O -0.567 6.567 8 C 0.080 3.920 9 N -1.106 6.106 10 S 2.726 3.274 11 O -1.004 7.004 12 O -1.002 7.002 13 C -0.790 4.790 14 C -0.021 4.021 15 C -0.199 4.199 16 C 0.113 3.887 17 C -0.470 4.470 18 H 0.088 0.912 19 C 0.033 3.967 20 N -0.803 5.803 21 Si 0.992 3.008 22 H -0.257 1.257 23 H -0.263 1.263 24 H -0.262 1.262 25 C -0.254 4.254 26 C -0.004 4.004 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.386 0.614 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.424 0.576 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.296 0.704 43 H 0.111 0.889 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.626 8.432 -8.817 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.208 4.208 4 C -0.185 4.185 5 C 0.050 3.950 6 H 0.128 0.872 7 O -0.374 6.374 8 C -0.046 4.046 9 N -0.867 5.867 10 S 2.821 3.179 11 O -0.994 6.994 12 O -0.992 6.992 13 C -0.883 4.883 14 C -0.041 4.041 15 C -0.219 4.219 16 C 0.109 3.891 17 C -0.497 4.497 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.427 5.427 21 Si 0.811 3.189 22 H -0.180 1.180 23 H -0.187 1.187 24 H -0.186 1.186 25 C -0.274 4.274 26 C -0.024 4.024 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.235 0.765 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.260 0.740 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.129 0.871 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.134 9.596 -8.388 14.144 hybrid contribution -0.577 -1.899 0.247 2.000 sum -6.710 7.697 -8.141 13.059 Atomic orbital electron populations 1.21842 0.94755 1.01837 1.01983 1.20999 0.95799 0.96312 0.97807 1.21910 1.01024 0.95845 1.02013 1.22332 0.94334 1.02226 0.99622 1.22124 0.94607 0.95002 0.83307 0.87226 1.86527 1.77730 1.29118 1.44038 1.22174 0.78956 1.02140 1.01350 1.55194 1.15563 1.88295 1.27620 1.00275 0.71718 0.73464 0.72403 1.93463 1.33520 1.88236 1.84215 1.93457 1.79713 1.66990 1.59051 1.29685 1.13129 1.21597 1.23869 1.20486 0.93499 0.96674 0.93486 1.21415 1.03381 0.91865 1.05242 1.18227 0.90122 0.94032 0.86701 1.20208 0.94881 0.95782 1.38838 0.89404 1.26929 0.95091 1.03640 0.92809 1.69812 1.01757 1.38012 1.33118 0.84998 0.79492 0.75862 0.78511 1.18034 1.18706 1.18628 1.21337 1.03849 0.96175 1.06037 1.20463 0.95043 0.92257 0.94642 0.92305 0.92749 0.92539 0.91097 0.92841 0.92356 0.92415 0.90795 0.90100 0.76462 0.89647 0.91422 0.73995 0.86462 0.86819 0.89245 0.87135 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.19 71.98 0.66 -1.38 16 2 C -0.09 -1.40 2.86 -10.79 -0.03 -1.43 16 3 C -0.15 -2.23 8.96 71.98 0.65 -1.58 16 4 C -0.15 -2.42 4.37 30.59 0.13 -2.29 16 5 C 0.11 2.13 2.91 30.59 0.09 2.22 16 6 H 0.11 2.07 6.47 -2.39 -0.02 2.06 16 7 O -0.57 -11.40 12.48 -148.98 -1.86 -13.26 16 8 C 0.08 1.98 5.86 86.38 0.51 2.48 16 9 N -1.11 -30.94 5.96 -187.48 -1.12 -32.06 16 10 S 2.73 100.27 5.73 -56.49 -0.32 99.95 16 11 O -1.00 -41.00 17.26 -128.00 -2.21 -43.21 16 12 O -1.00 -40.87 16.72 -128.00 -2.14 -43.01 16 13 C -0.79 -33.79 5.97 22.46 0.13 -33.66 16 14 C -0.02 -0.97 9.49 22.22 0.21 -0.76 16 15 C -0.20 -9.98 8.66 22.73 0.20 -9.78 16 16 C 0.11 5.77 5.55 -21.29 -0.12 5.65 16 17 C -0.47 -23.30 9.07 23.46 0.21 -23.09 16 18 H 0.09 4.16 7.87 -2.91 -0.02 4.14 16 19 C 0.03 1.52 5.26 85.26 0.45 1.97 16 20 N -0.80 -37.83 10.82 21.83 0.24 -37.59 16 21 Si 0.99 34.37 29.57 68.60 2.03 36.40 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 23 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 24 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 25 C -0.25 -12.03 9.80 22.73 0.22 -11.81 16 26 C 0.00 -0.19 9.49 22.22 0.21 0.02 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 1.20 7.60 -2.39 -0.02 1.18 16 31 H 0.05 0.84 6.53 -2.39 -0.02 0.82 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.39 6.15 9.05 -74.05 -0.67 5.48 16 37 H 0.09 2.10 7.75 -2.39 -0.02 2.09 16 38 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.42 10.39 8.51 -96.74 -0.82 9.57 16 40 H 0.12 4.86 7.59 -2.91 -0.02 4.83 16 41 H 0.11 5.85 6.20 -2.91 -0.02 5.83 16 42 H 0.30 12.38 8.30 -92.71 -0.77 11.61 16 43 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 44 H 0.12 4.87 7.60 -2.91 -0.02 4.85 16 Total: -1.00 -62.79 373.96 -2.34 -65.12 By element: Atomic # 1 Polarization: 41.58 SS G_CDS: -0.47 Total: 41.11 kcal Atomic # 6 Polarization: -76.97 SS G_CDS: 3.52 Total: -73.44 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -0.88 Total: -69.65 kcal Atomic # 8 Polarization: -93.27 SS G_CDS: -6.21 Total: -99.48 kcal Atomic # 14 Polarization: 34.37 SS G_CDS: 2.03 Total: 36.40 kcal Atomic # 16 Polarization: 100.27 SS G_CDS: -0.32 Total: 99.95 kcal Total: -62.79 -2.34 -65.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228550107.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.717 kcal (2) G-P(sol) polarization free energy of solvation -62.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds