Wall clock time and date at job start Tue Mar 31 2020 15:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 C 1.53008 * 109.47164 * 119.99418 * 2 1 3 5 5 H 1.08999 * 109.46835 * 294.24485 * 4 2 1 6 6 C 1.52995 * 109.47293 * 174.24040 * 4 2 1 7 7 C 1.53001 * 109.47133 * 175.00039 * 6 4 2 8 8 O 1.42900 * 109.47113 * 179.97438 * 7 6 4 9 9 N 1.46502 * 109.46599 * 54.24362 * 4 2 1 10 10 S 1.65604 * 119.99606 * 231.99140 * 9 4 2 11 11 O 1.42101 * 106.39877 * 180.02562 * 10 9 4 12 12 O 1.42099 * 106.40049 * 312.98062 * 10 9 4 13 13 C 1.76197 * 107.22090 * 66.52028 * 10 9 4 14 14 C 1.38627 * 119.74960 * 268.72000 * 13 10 9 15 15 C 1.37620 * 120.24642 * 179.71938 * 14 13 10 16 16 C 1.40717 * 119.74654 * 0.57756 * 15 14 13 17 17 C 1.41390 * 120.24510 * 179.68097 * 16 15 14 18 18 H 1.08004 * 120.00095 * 157.50886 * 17 16 15 19 19 C 1.39946 * 120.00297 * 337.50752 * 17 16 15 20 20 N 1.30823 * 119.99836 * 332.28973 * 19 17 16 21 21 Si 1.86801 * 120.00005 * 152.28923 * 19 17 16 22 22 H 1.48498 * 109.47246 * 94.98501 * 21 19 17 23 23 H 1.48497 * 109.47055 * 214.98454 * 21 19 17 24 24 H 1.48499 * 109.47146 * 334.98099 * 21 19 17 25 25 C 1.40712 * 119.50985 * 359.69811 * 16 15 14 26 26 C 1.37628 * 119.74463 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47271 * 303.10415 * 1 2 3 28 28 H 1.08998 * 109.46633 * 63.10387 * 1 2 3 29 29 H 1.09000 * 109.47077 * 183.09641 * 1 2 3 30 30 H 1.08999 * 109.47575 * 239.99963 * 2 1 3 31 31 H 1.08995 * 109.47419 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47149 * 299.99565 * 3 2 1 33 33 H 1.09000 * 109.47613 * 59.99428 * 3 2 1 34 34 H 1.09004 * 109.47347 * 55.00065 * 6 4 2 35 35 H 1.08998 * 109.47514 * 295.00269 * 6 4 2 36 36 H 1.08998 * 109.47109 * 300.00479 * 7 6 4 37 37 H 1.08998 * 109.46609 * 60.00053 * 7 6 4 38 38 H 0.96698 * 113.99615 * 179.97438 * 8 7 6 39 39 H 0.96997 * 120.00102 * 51.98557 * 9 4 2 40 40 H 1.07998 * 119.87906 * 359.97438 * 14 13 10 41 41 H 1.08001 * 120.12758 * 180.28074 * 15 14 13 42 42 H 0.96993 * 120.00004 * 179.97438 * 20 19 17 43 43 H 1.08001 * 120.13127 * 179.97438 * 25 16 15 44 44 H 1.08003 * 119.87344 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.7633 -0.1512 2.1363 6 6 3.5631 -0.8478 1.1791 7 6 4.0850 -1.4559 2.4825 8 8 5.5075 -1.5747 2.4167 9 7 1.4418 -2.0566 1.3207 10 16 0.6788 -2.5491 2.7055 11 8 0.2143 -3.8694 2.4598 12 8 1.5461 -2.2172 3.7811 13 6 -0.7565 -1.5450 2.8957 14 6 -0.6822 -0.3706 3.6285 15 6 -1.7955 0.4243 3.7787 16 6 -3.0154 0.0349 3.1953 17 6 -4.1674 0.8402 3.3487 18 1 -4.9787 0.7628 2.6399 19 6 -4.2565 1.7376 4.4188 20 7 -3.6139 1.4939 5.5320 21 14 -5.2928 3.2834 4.2577 22 1 -6.6456 3.0329 4.8166 23 1 -4.6465 4.3926 5.0040 24 1 -5.4101 3.6536 2.8244 25 6 -3.0804 -1.1621 2.4585 26 6 -1.9529 -1.9386 2.3165 27 1 -0.3634 0.5613 0.8609 28 1 -0.3632 0.4649 -0.9165 29 1 -0.3633 -1.0262 0.0555 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 4.0036 0.1391 1.0367 35 1 3.8361 -1.4915 0.3430 36 1 3.8120 -0.8121 3.3187 37 1 3.6445 -2.4427 2.6249 38 1 5.9077 -1.9534 3.2113 39 1 1.4925 -2.6522 0.5568 40 1 0.2538 -0.0763 4.0798 41 1 -1.7344 1.3412 4.3463 42 1 -3.6754 2.1161 6.2736 43 1 -4.0116 -1.4708 2.0068 44 1 -2.0004 -2.8575 1.7510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228610987.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:58 Heat of formation + Delta-G solvation = -136.014804 kcal Electronic energy + Delta-G solvation = -27093.750431 eV Core-core repulsion = 23329.628861 eV Total energy + Delta-G solvation = -3764.121570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.40294 -37.58369 -36.46220 -36.35779 -35.14857 -34.10274 -32.78431 -30.63697 -30.29243 -29.51008 -26.77792 -25.83858 -25.10710 -21.61686 -21.48296 -21.13198 -20.21615 -18.91940 -17.65755 -17.35600 -17.02676 -16.44581 -16.22931 -15.52633 -14.95022 -14.53227 -14.47006 -14.22724 -13.93792 -13.47770 -13.36949 -13.22726 -12.75242 -12.57421 -12.50407 -12.24967 -12.04139 -11.69708 -11.54794 -11.47442 -11.43550 -11.38061 -11.30713 -11.26095 -11.16112 -10.91730 -10.79303 -10.66078 -10.53409 -10.39914 -9.80244 -9.75823 -9.68164 -9.42997 -9.04667 -8.02375 -7.72994 -7.27462 -4.80899 1.24199 2.25011 2.81963 2.86625 2.90186 2.94339 3.61736 3.70115 4.14852 4.18234 4.50157 4.89708 4.97136 5.04654 5.18658 5.22897 5.34315 5.40234 5.51412 5.58946 5.71785 5.77243 5.88321 5.92961 6.05187 6.07666 6.10820 6.12272 6.19310 6.24967 6.29525 6.54835 6.63946 6.68132 6.72980 6.84793 7.02994 7.28193 7.32741 7.41463 7.59048 7.67781 7.72703 7.93134 8.26851 8.47250 8.62379 9.66611 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.004018 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.310385 B = 6966.722536 C = 7460.771217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 C -0.150 4.150 4 C 0.166 3.834 5 H 0.092 0.908 6 C -0.130 4.130 7 C 0.074 3.926 8 O -0.582 6.582 9 N -1.121 6.121 10 S 2.688 3.312 11 O -0.988 6.988 12 O -0.984 6.984 13 C -0.788 4.788 14 C -0.011 4.011 15 C -0.190 4.190 16 C 0.142 3.858 17 C -0.438 4.438 18 H 0.089 0.911 19 C 0.080 3.920 20 N -0.750 5.750 21 Si 0.908 3.092 22 H -0.266 1.266 23 H -0.270 1.270 24 H -0.255 1.255 25 C -0.240 4.240 26 C 0.008 3.992 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.378 0.622 39 H 0.409 0.591 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.291 0.709 43 H 0.098 0.902 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 1.182 -7.059 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.208 4.208 4 C 0.058 3.942 5 H 0.110 0.890 6 C -0.169 4.169 7 C -0.004 4.004 8 O -0.388 6.388 9 N -0.875 5.875 10 S 2.787 3.213 11 O -0.979 6.979 12 O -0.974 6.974 13 C -0.885 4.885 14 C -0.031 4.031 15 C -0.210 4.210 16 C 0.139 3.861 17 C -0.464 4.464 18 H 0.107 0.893 19 C -0.145 4.145 20 N -0.371 5.371 21 Si 0.731 3.269 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.178 1.178 25 C -0.260 4.260 26 C -0.012 4.012 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.067 0.933 38 H 0.224 0.776 39 H 0.242 0.758 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.116 0.884 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.931 0.924 -6.675 11.188 hybrid contribution -0.992 0.700 0.192 1.229 sum 7.939 1.624 -6.483 10.377 Atomic orbital electron populations 1.21857 0.93636 1.02908 1.02100 1.21399 0.97160 0.95984 0.97366 1.21905 1.00799 0.95740 1.02342 1.20667 0.91088 0.82703 0.99695 0.88994 1.21967 0.95022 1.02156 0.97749 1.22277 0.79903 1.00439 0.97748 1.86381 1.21228 1.86925 1.44257 1.55873 1.73134 1.24273 1.34237 1.01351 0.74108 0.73447 0.72382 1.93492 1.82292 1.36808 1.85306 1.93481 1.66174 1.85232 1.52509 1.29002 1.15478 1.17862 1.26114 1.20161 0.97627 0.91897 0.93417 1.21124 0.92229 1.01040 1.06622 1.17756 0.92465 0.88984 0.86931 1.19918 1.02603 1.15824 1.08086 0.89303 1.26138 0.95296 0.99188 0.93895 1.69873 1.31764 1.33705 1.01779 0.86279 0.80009 0.80161 0.80460 1.19050 1.19481 1.17806 1.20950 0.97172 0.97482 1.10414 1.20098 0.91783 0.95900 0.93466 0.91434 0.93257 0.92027 0.91078 0.92500 0.92494 0.92165 0.90137 0.91019 0.92683 0.93268 0.77587 0.75778 0.88149 0.87058 0.89778 0.88389 0.88108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.86 37.16 0.33 -1.69 16 2 C -0.10 -1.14 2.67 -90.62 -0.24 -1.39 16 3 C -0.15 -1.57 8.97 37.16 0.33 -1.24 16 4 C 0.17 2.15 1.84 -67.93 -0.12 2.02 16 5 H 0.09 1.30 7.65 -51.93 -0.40 0.91 16 6 C -0.13 -1.57 5.13 -26.73 -0.14 -1.71 16 7 C 0.07 1.01 6.00 37.16 0.22 1.23 16 8 O -0.58 -7.43 13.66 -35.23 -0.48 -7.91 16 9 N -1.12 -15.60 3.77 -4.89 -0.02 -15.62 16 10 S 2.69 49.44 5.55 -107.50 -0.60 48.84 16 11 O -0.99 -20.64 17.28 -57.17 -0.99 -21.63 16 12 O -0.98 -19.59 14.86 -57.17 -0.85 -20.44 16 13 C -0.79 -16.34 5.82 -39.29 -0.23 -16.57 16 14 C -0.01 -0.23 9.38 -39.66 -0.37 -0.61 16 15 C -0.19 -4.50 8.75 -38.87 -0.34 -4.84 16 16 C 0.14 3.45 5.57 -106.83 -0.60 2.86 16 17 C -0.44 -10.41 8.99 -37.74 -0.34 -10.75 16 18 H 0.09 2.01 7.98 -52.48 -0.42 1.59 16 19 C 0.08 1.78 4.91 -17.34 -0.09 1.70 16 20 N -0.75 -17.51 11.48 55.55 0.64 -16.87 16 21 Si 0.91 16.44 29.64 -169.99 -5.04 11.41 16 22 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 23 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 24 H -0.25 -4.59 7.11 56.52 0.40 -4.19 16 25 C -0.24 -5.45 9.80 -38.87 -0.38 -5.83 16 26 C 0.01 0.16 9.49 -39.66 -0.38 -0.21 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.88 7.35 -51.93 -0.38 0.50 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.53 6.49 -51.93 -0.34 0.19 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.90 6.37 -51.93 -0.33 0.57 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 37 H 0.05 0.72 6.70 -51.93 -0.35 0.37 16 38 H 0.38 3.27 9.12 45.56 0.42 3.68 16 39 H 0.41 4.78 8.96 -34.48 -0.31 4.47 16 40 H 0.10 2.03 7.57 -52.49 -0.40 1.63 16 41 H 0.11 2.68 6.40 -52.49 -0.34 2.35 16 42 H 0.29 6.06 8.30 -40.82 -0.34 5.72 16 43 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 44 H 0.10 1.98 7.62 -52.48 -0.40 1.58 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -29.27 369.27 -9.86 -39.13 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.76 Total: 14.55 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: -2.34 Total: -37.03 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.62 Total: -32.50 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -2.32 Total: -49.97 kcal Atomic # 14 Polarization: 16.44 SS G_CDS: -5.04 Total: 11.41 kcal Atomic # 16 Polarization: 49.44 SS G_CDS: -0.60 Total: 48.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.27 -9.86 -39.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228610987.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.882 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds